>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)|
           (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA
           protein kinase)
          Length = 1007

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -3

Query: 665 RSPIKSPVRSPTQRGSSITLSPNKASSSSPALTQQEQEMLRDVKYRKFVPG-ISKSQEFD 489
           RSP + P RSP +R  S  L      S SP L  +  +  +    R   PG  +KS+  +
Sbjct: 340 RSPSRRPGRSPKRRSLSPKLRDKSRRSRSPLLNDRRSKQSKSPS-RTLSPGRRAKSRSLE 398

Query: 488 TKARHMKQSRL 456
            K R  ++ RL
Sbjct: 399 RKRREPERRRL 409

>H1_PARAN (P02256) Histone H1, gonadal|
          Length = 248

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -3

Query: 689 QSRAANGERSPIKSPVRSPTQRGSSITLSPNKA-SSSSPALTQQEQEMLRDVKYRK 525
           Q RAA+  +SP KSP +SP +  +S      +A +S+ P + +  Q  +  +K RK
Sbjct: 5   QKRAASPRKSPRKSPKKSPRKASASPRRKAKRARASTHPPVLEMVQAAITAMKERK 60

>SEUSS_ARATH (Q8W234) Transcriptional corepressor SEUSS|
          Length = 877

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 25/104 (24%), Positives = 45/104 (43%)
 Frame = -3

Query: 728 ILELVVSLQHLISQSRAANGERSPIKSPVRSPTQRGSSITLSPNKASSSSPALTQQEQEM 549
           I E+V S++ LI  SR       PI+S  + P + G S  L       +S  L QQ+Q+ 
Sbjct: 538 ISEVVNSMKDLIDYSRETR--TGPIESLAKFPRRTGPSSALPGPSPQQASDQLRQQQQQQ 595

Query: 548 LRDVKYRKFVPGISKSQEFDTKARHMKQSRLIKSNSHSPSSGNR 417
            +            + Q+   + +  +Q + +  N++S  S  +
Sbjct: 596 QQ------------QQQQQQQQQQQQQQQQTVSQNTNSDQSSRQ 627

>COTB_BACSU (P07789) Spore coat protein B|
          Length = 380

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 26/109 (23%), Positives = 47/109 (43%)
 Frame = -3

Query: 686 SRAANGERSPIKSPVRSPTQRGSSITLSPNKASSSSPALTQQEQEMLRDVKYRKFVPGIS 507
           S++    RS   S     + + S    S +  SS S + ++  +  L+   Y+      S
Sbjct: 275 SKSGRSSRSKSSSKSSKRSLKSSDYQSSKSGRSSRSKSSSKSSKRSLKSSDYQS-----S 329

Query: 506 KSQEFDTKARHMKQSRLIKSNSHSPSSGNRKEFLSIRSLLPVIDFEIDR 360
           KS +   ++   + SR    +S   SSG +KE  S  +++  ID+   R
Sbjct: 330 KSSKRSPRSSDYQSSRSPGYSSSIKSSGKQKEDYSYETIVRTIDYHWKR 378

>CYAA_SACKL (P23466) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
           (Adenylyl cyclase)
          Length = 1839

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -3

Query: 692 SQSRAANGERSPIKSPVRSPTQRGSSITLSPNKASSS----SPALTQQEQEMLRD 540
           SQS  + G RS I  P  S ++RGS+ +   + + SS    +P +T Q+QE   D
Sbjct: 165 SQSNESRGTRSSIFFPSTSNSRRGSATSTMTSGSRSSHPPDTPPITSQQQEQQYD 219

>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)|
           (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4
           kinase)
          Length = 1007

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = -3

Query: 665 RSPIKSPVRSPTQRGSSITLSPNKASSSSPALTQQEQEMLRDVKYRKFVPG-ISKSQEFD 489
           RSP + P RSP +R  S         S SP L  +  +  +    R   PG  +KS+  +
Sbjct: 340 RSPSRRPGRSPKRRSLSPKPRDKSRRSRSPLLNDRRSKQSKSPS-RTLSPGRRAKSRSLE 398

Query: 488 TKARHMKQSRLIKSNSHSPSSGNRKEFLSIR 396
            K R  ++ RL      SP +  R + LS R
Sbjct: 399 RKRREPERRRL-----SSPRTRPRDDILSRR 424

>APC_HUMAN (P25054) Adenomatous polyposis coli protein (Protein APC)|
          Length = 2843

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 27/99 (27%), Positives = 44/99 (44%)
 Frame = -3

Query: 725  LELVVSLQHLISQSRAANGERSPIKSPVRSPTQRGSSITLSPNKASSSSPALTQQEQEML 546
            LE   S + L   SR A+  RS  ++PV SP                S P ++      +
Sbjct: 2456 LEESASFESLSPSSRPASPTRSQAQTPVLSP----------------SLPDMSLSTHSSV 2499

Query: 545  RDVKYRKFVPGISKSQEFDTKARHMKQSRLIKSNSHSPS 429
            +   +RK  P +S + E++   R  K+  + +S+S SPS
Sbjct: 2500 QAGGWRKLPPNLSPTIEYN-DGRPAKRHDIARSHSESPS 2537

>ACINU_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in the nucleus|
           (Acinus)
          Length = 1341

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 23/80 (28%), Positives = 34/80 (42%)
 Frame = -3

Query: 668 ERSPIKSPVRSPTQRGSSITLSPNKASSSSPALTQQEQEMLRDVKYRKFVPGISKSQEFD 489
           ER   +S  +   +RG   T S  +A  S  A  QQE+EM               +   +
Sbjct: 322 ERPKTRSQEQEVLERGGRFTRSQEEARKSHLARQQQEKEM-------------KTTSPLE 368

Query: 488 TKARHMKQSRLIKSNSHSPS 429
            + R +K S+ +K  S SPS
Sbjct: 369 EEEREIKSSQGLKEKSKSPS 388

>APC_MOUSE (Q61315) Adenomatous polyposis coli protein (Protein APC) (mAPC)|
          Length = 2845

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 26/99 (26%), Positives = 44/99 (44%)
 Frame = -3

Query: 725  LELVVSLQHLISQSRAANGERSPIKSPVRSPTQRGSSITLSPNKASSSSPALTQQEQEML 546
            LE   S + L   SR  +  RS  ++PV SP+    S++  P+  +              
Sbjct: 2456 LEESASFESLSPSSRPDSPTRSQAQTPVLSPSLPDMSLSTHPSVQAGG------------ 2503

Query: 545  RDVKYRKFVPGISKSQEFDTKARHMKQSRLIKSNSHSPS 429
                +RK  P +S + E++   R  K+  + +S+S SPS
Sbjct: 2504 ----WRKLPPNLSPTIEYN-DGRPTKRHDIARSHSESPS 2537

>APC_RAT (P70478) Adenomatous polyposis coli protein (Protein APC)|
          Length = 2842

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 26/99 (26%), Positives = 44/99 (44%)
 Frame = -3

Query: 725  LELVVSLQHLISQSRAANGERSPIKSPVRSPTQRGSSITLSPNKASSSSPALTQQEQEML 546
            LE   S + L   SR  +  RS  ++PV SP+    S++  P+  +              
Sbjct: 2456 LEESASFESLSPSSRPDSPTRSQAQTPVLSPSLPDMSLSTHPSVQAGG------------ 2503

Query: 545  RDVKYRKFVPGISKSQEFDTKARHMKQSRLIKSNSHSPS 429
                +RK  P +S + E+ +  R  K+  + +S+S SPS
Sbjct: 2504 ----WRKLPPNLSPTIEY-SDGRPSKRHDIARSHSESPS 2537

>YAT3_SCHPO (Q10150) Hypothetical protein C1D4.03c in chromosome I|
          Length = 513

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
 Frame = -3

Query: 668 ERSPIKSPV------RSPTQRGSSITLSPNKASSSSPALTQQEQEMLRDV-KYRKFVPGI 510
           E S IK  V      RS      S+ L+P     ++P++++ +QE+ R   + R  V  +
Sbjct: 6   EHSSIKEEVENDNVHRSHESECGSLLLNPGNVLMAAPSVSEDDQEVSRSTPELRSHVENV 65

Query: 509 SKSQEFDTKARHMKQSRLIKSNSHSPSSGNRKEFLSIRSLLPVIDFEIDRTKALDMI 339
              ++  +   H   S L  S S S SS N      I  LL +I F++ + K   +I
Sbjct: 66  ---EQLLSDILHDNSSPLNVSTSVS-SSSNNTAVDEIIKLLSLISFDLAKQKRTYLI 118

>GPNMB_RAT (Q6P7C7) Transmembrane glycoprotein NMB precursor|
          Length = 572

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
 Frame = -3

Query: 719 LVVSLQHLISQSRAANGE-------RSPIKSPVRSPTQRGSSITLSPNKASSSSPALTQQ 561
           L VS  H ++ +   NG        ++ +  P  SPT   SS T SP+ ASS SP L+  
Sbjct: 291 LFVSNNHTLNHTYVLNGTFNFNLTVQTAVPGPCPSPTPSPSSST-SPSPASSPSPTLSTP 349

Query: 560 EQEML 546
              ++
Sbjct: 350 SPSLM 354


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,821,473
Number of Sequences: 219361
Number of extensions: 2192768
Number of successful extensions: 6659
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6644
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7649585595
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)