| Clone Name | rbaal4j16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190821.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1854 Score = 347 bits (175), Expect = 3e-92 Identities = 336/389 (86%), Gaps = 3/389 (0%) Strand = Plus / Minus Query: 346 tccagagctttggtcctatcgatttcaaagtcgatgacaggaagcagactcctgatcgaa 405 |||| |||||| ||||||||||| |||||||||||||||||||||| |||||||| || Sbjct: 1808 tccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcatcctcctgattgat 1749 Query: 406 agaaattctttcctgttaccactgcttggtgaatggctgttacttttgatcaacctgctt 465 || || |||||| |||| |||||||||||||| || || ||||||||| ||||||||||| Sbjct: 1748 agcaactctttcatgttgccactgcttggtgagtgactattacttttgctcaacctgctt 1689 Query: 466 tgcttcatatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaat 525 ||||| ||||||| | ||| || || |||||||||||||||||||||||||| | |||| Sbjct: 1688 tgcttgctatgtctggacttagtctcgaactcttggcttttgcttataccagggatgaat 1629 Query: 526 ttcctgtacttgacatcccttagcatctcttgttcttgttgtgtcagagcaggtgatgaa 585 |||||||||||||||||||||||||| ||||| |||| ||| || ||| |||||||||| Sbjct: 1628 ttcctgtacttgacatcccttagcatatcttgatcttcttgggtaagaagaggtgatgaa 1569 Query: 586 ---ctgctggctttgtttggagacaatgtgattgaagagcccctttgtgtaggagatcga 642 |||||||||||||||||||| |||||||||| | ||||||||||||||| |||||| Sbjct: 1568 ttgctgctggctttgtttggagataatgtgattgtatggcccctttgtgtaggcgatcga 1509 Query: 643 acaggagacttgatgggagatcgctcgccgttagcggctctggattgactgatgagatgc 702 |||||||| ||||||||||| |||||||| ||||||| | | ||| |||| || ||||| Sbjct: 1508 acaggagatttgatgggagaccgctcgccattagcggatttagatcgactaataagatga 1449 Query: 703 tgaagcgatacgacaagctcaaggatatg 731 |||||| || | |||||||| |||||||| Sbjct: 1448 tgaagccatgcaacaagctcgaggatatg 1420
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 347 bits (175), Expect = 3e-92 Identities = 336/389 (86%), Gaps = 3/389 (0%) Strand = Plus / Plus Query: 346 tccagagctttggtcctatcgatttcaaagtcgatgacaggaagcagactcctgatcgaa 405 |||| |||||| ||||||||||| |||||||||||||||||||||| |||||||| || Sbjct: 37892598 tccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcatcctcctgattgat 37892657 Query: 406 agaaattctttcctgttaccactgcttggtgaatggctgttacttttgatcaacctgctt 465 || || |||||| |||| |||||||||||||| || || ||||||||| ||||||||||| Sbjct: 37892658 agcaactctttcatgttgccactgcttggtgagtgactattacttttgctcaacctgctt 37892717 Query: 466 tgcttcatatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaat 525 ||||| ||||||| | ||| || || |||||||||||||||||||||||||| | |||| Sbjct: 37892718 tgcttgctatgtctggacttagtctcgaactcttggcttttgcttataccagggatgaat 37892777 Query: 526 ttcctgtacttgacatcccttagcatctcttgttcttgttgtgtcagagcaggtgatgaa 585 |||||||||||||||||||||||||| ||||| |||| ||| || ||| |||||||||| Sbjct: 37892778 ttcctgtacttgacatcccttagcatatcttgatcttcttgggtaagaagaggtgatgaa 37892837 Query: 586 ---ctgctggctttgtttggagacaatgtgattgaagagcccctttgtgtaggagatcga 642 |||||||||||||||||||| |||||||||| | ||||||||||||||| |||||| Sbjct: 37892838 ttgctgctggctttgtttggagataatgtgattgtatggcccctttgtgtaggcgatcga 37892897 Query: 643 acaggagacttgatgggagatcgctcgccgttagcggctctggattgactgatgagatgc 702 |||||||| ||||||||||| |||||||| ||||||| | | ||| |||| || ||||| Sbjct: 37892898 acaggagatttgatgggagaccgctcgccattagcggatttagatcgactaataagatga 37892957 Query: 703 tgaagcgatacgacaagctcaaggatatg 731 |||||| || | |||||||| |||||||| Sbjct: 37892958 tgaagccatgcaacaagctcgaggatatg 37892986 Score = 77.8 bits (39), Expect = 5e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 44 tcaaaacttgcattccttgtacaagagctcacaaacacaacaaattgctttttacaata 102 |||||||||||||| |||||||||||||| |||||||||| |||| |||||||||||| Sbjct: 37892243 tcaaaacttgcatttcttgtacaagagctaacaaacacaaagaatttctttttacaata 37892301
>dbj|AP004669.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0491F11 Length = 152274 Score = 347 bits (175), Expect = 3e-92 Identities = 336/389 (86%), Gaps = 3/389 (0%) Strand = Plus / Plus Query: 346 tccagagctttggtcctatcgatttcaaagtcgatgacaggaagcagactcctgatcgaa 405 |||| |||||| ||||||||||| |||||||||||||||||||||| |||||||| || Sbjct: 113954 tccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcatcctcctgattgat 114013 Query: 406 agaaattctttcctgttaccactgcttggtgaatggctgttacttttgatcaacctgctt 465 || || |||||| |||| |||||||||||||| || || ||||||||| ||||||||||| Sbjct: 114014 agcaactctttcatgttgccactgcttggtgagtgactattacttttgctcaacctgctt 114073 Query: 466 tgcttcatatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaat 525 ||||| ||||||| | ||| || || |||||||||||||||||||||||||| | |||| Sbjct: 114074 tgcttgctatgtctggacttagtctcgaactcttggcttttgcttataccagggatgaat 114133 Query: 526 ttcctgtacttgacatcccttagcatctcttgttcttgttgtgtcagagcaggtgatgaa 585 |||||||||||||||||||||||||| ||||| |||| ||| || ||| |||||||||| Sbjct: 114134 ttcctgtacttgacatcccttagcatatcttgatcttcttgggtaagaagaggtgatgaa 114193 Query: 586 ---ctgctggctttgtttggagacaatgtgattgaagagcccctttgtgtaggagatcga 642 |||||||||||||||||||| |||||||||| | ||||||||||||||| |||||| Sbjct: 114194 ttgctgctggctttgtttggagataatgtgattgtatggcccctttgtgtaggcgatcga 114253 Query: 643 acaggagacttgatgggagatcgctcgccgttagcggctctggattgactgatgagatgc 702 |||||||| ||||||||||| |||||||| ||||||| | | ||| |||| || ||||| Sbjct: 114254 acaggagatttgatgggagaccgctcgccattagcggatttagatcgactaataagatga 114313 Query: 703 tgaagcgatacgacaagctcaaggatatg 731 |||||| || | |||||||| |||||||| Sbjct: 114314 tgaagccatgcaacaagctcgaggatatg 114342 Score = 77.8 bits (39), Expect = 5e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 44 tcaaaacttgcattccttgtacaagagctcacaaacacaacaaattgctttttacaata 102 |||||||||||||| |||||||||||||| |||||||||| |||| |||||||||||| Sbjct: 113599 tcaaaacttgcatttcttgtacaagagctaacaaacacaaagaatttctttttacaata 113657
>dbj|AP003566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0008G24 Length = 152736 Score = 347 bits (175), Expect = 3e-92 Identities = 336/389 (86%), Gaps = 3/389 (0%) Strand = Plus / Plus Query: 346 tccagagctttggtcctatcgatttcaaagtcgatgacaggaagcagactcctgatcgaa 405 |||| |||||| ||||||||||| |||||||||||||||||||||| |||||||| || Sbjct: 151846 tccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcatcctcctgattgat 151905 Query: 406 agaaattctttcctgttaccactgcttggtgaatggctgttacttttgatcaacctgctt 465 || || |||||| |||| |||||||||||||| || || ||||||||| ||||||||||| Sbjct: 151906 agcaactctttcatgttgccactgcttggtgagtgactattacttttgctcaacctgctt 151965 Query: 466 tgcttcatatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaat 525 ||||| ||||||| | ||| || || |||||||||||||||||||||||||| | |||| Sbjct: 151966 tgcttgctatgtctggacttagtctcgaactcttggcttttgcttataccagggatgaat 152025 Query: 526 ttcctgtacttgacatcccttagcatctcttgttcttgttgtgtcagagcaggtgatgaa 585 |||||||||||||||||||||||||| ||||| |||| ||| || ||| |||||||||| Sbjct: 152026 ttcctgtacttgacatcccttagcatatcttgatcttcttgggtaagaagaggtgatgaa 152085 Query: 586 ---ctgctggctttgtttggagacaatgtgattgaagagcccctttgtgtaggagatcga 642 |||||||||||||||||||| |||||||||| | ||||||||||||||| |||||| Sbjct: 152086 ttgctgctggctttgtttggagataatgtgattgtatggcccctttgtgtaggcgatcga 152145 Query: 643 acaggagacttgatgggagatcgctcgccgttagcggctctggattgactgatgagatgc 702 |||||||| ||||||||||| |||||||| ||||||| | | ||| |||| || ||||| Sbjct: 152146 acaggagatttgatgggagaccgctcgccattagcggatttagatcgactaataagatga 152205 Query: 703 tgaagcgatacgacaagctcaaggatatg 731 |||||| || | |||||||| |||||||| Sbjct: 152206 tgaagccatgcaacaagctcgaggatatg 152234 Score = 77.8 bits (39), Expect = 5e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 44 tcaaaacttgcattccttgtacaagagctcacaaacacaacaaattgctttttacaata 102 |||||||||||||| |||||||||||||| |||||||||| |||| |||||||||||| Sbjct: 151491 tcaaaacttgcatttcttgtacaagagctaacaaacacaaagaatttctttttacaata 151549
>gb|AY108000.1| Zea mays PCO112270 mRNA sequence Length = 823 Score = 299 bits (151), Expect = 7e-78 Identities = 285/329 (86%), Gaps = 3/329 (0%) Strand = Plus / Minus Query: 337 tcgatcatatccagagctttggtcctatcgatttcaaagtcgatgacaggaagcagactc 396 ||||||||||| || ||||| |||| ||||| ||||||||||| ||||||||||| ||| Sbjct: 423 tcgatcatatcaagggcttttatcctgtcgatctcaaagtcgatcacaggaagcagcctc 364 Query: 397 ctgatcgaaagaaattctttcctgttaccactgcttggtgaatggctgttacttttgatc 456 ||||| || || ||||||| ||| |||||||||||||||||||| ||||||||| | Sbjct: 363 ctgattgatagcgtctctttccggttgccactgcttggtgaatggctattacttttgctt 304 Query: 457 aacctgctttgcttcatatgtcttgcctttgtgtcaaactcttggcttttgcttatacca 516 |||||||||||||| |||| ||| |||| ||||||||||| |||||||||||||||||| Sbjct: 303 aacctgctttgcttattatgcctttccttagtgtcaaactcctggcttttgcttatacca 244 Query: 517 ggaacgaatttcctgtacttgacatcccttagcatctcttgttcttgttgtgtcagagca 576 || | |||||||||||||||||||||||||||||| ||||| |||| ||| |||||| | Sbjct: 243 gggatgaatttcctgtacttgacatcccttagcatatcttgatcttcttgcgtcagaaga 184 Query: 577 ggtgatgaa---ctgctggctttgtttggagacaatgtgattgaagagcccctttgtgta 633 ||||||||| |||||| |||||||||||||||||||||||| | || ||||||||| Sbjct: 183 ggtgatgaattgctgctgtttttgtttggagacaatgtgattgaggcccctctttgtgta 124 Query: 634 ggagatcgaacaggagacttgatgggaga 662 ||||| ||||||||||||||||| ||||| Sbjct: 123 ggagaccgaacaggagacttgattggaga 95 Score = 85.7 bits (43), Expect = 2e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 43 ctcaaaacttgcattccttgtacaagagctcacaaacacaacaaattgctttttacaata 102 ||||||||||| |||||||||||| ||||| | |||||||||||| |||||||||||| Sbjct: 771 ctcaaaacttgtattccttgtacatgagctaagtaacacaacaaatccctttttacaata 712 Query: 103 aaatttccctttcct 117 ||||||| ||||||| Sbjct: 711 aaatttcactttcct 697
>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048I21, complete sequence Length = 137650 Score = 73.8 bits (37), Expect = 7e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 473 tatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaatttcc 529 ||||||||| |||||||||||||||||| || |||||||| ||||| |||||||||| Sbjct: 108837 tatgtcttgactttgtgtcaaactcttgactcttgcttattccagggacgaatttcc 108781 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 683 tggattgactgatgagatgctgaagcgatacgacaagctcaaggatatg 731 |||||| |||||||||||| || ||| | |||||||||||||||||||| Sbjct: 108630 tggatttactgatgagatgatggagccacacgacaagctcaaggatatg 108582 Score = 52.0 bits (26), Expect = 0.003 Identities = 41/46 (89%) Strand = Plus / Minus Query: 346 tccagagctttggtcctatcgatttcaaagtcgatgacaggaagca 391 |||| ||||||||||||||| || | ||||||||||||||||||| Sbjct: 108970 tccaaagctttggtcctatccatctggaagtcgatgacaggaagca 108925
>ref|XM_475271.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1923 Score = 73.8 bits (37), Expect = 7e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 473 tatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaatttcc 529 ||||||||| |||||||||||||||||| || |||||||| ||||| |||||||||| Sbjct: 1753 tatgtcttgactttgtgtcaaactcttgactcttgcttattccagggacgaatttcc 1697 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 683 tggattgactgatgagatgctgaagcgatacgacaagctcaaggatatg 731 |||||| |||||||||||| || ||| | |||||||||||||||||||| Sbjct: 1546 tggatttactgatgagatgatggagccacacgacaagctcaaggatatg 1498 Score = 52.0 bits (26), Expect = 0.003 Identities = 41/46 (89%) Strand = Plus / Minus Query: 346 tccagagctttggtcctatcgatttcaaagtcgatgacaggaagca 391 |||| ||||||||||||||| || | ||||||||||||||||||| Sbjct: 1886 tccaaagctttggtcctatccatctggaagtcgatgacaggaagca 1841
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 73.8 bits (37), Expect = 7e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 473 tatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaatttcc 529 ||||||||| |||||||||||||||||| || |||||||| ||||| |||||||||| Sbjct: 20982059 tatgtcttgactttgtgtcaaactcttgactcttgcttattccagggacgaatttcc 20982003 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 683 tggattgactgatgagatgctgaagcgatacgacaagctcaaggatatg 731 |||||| |||||||||||| || ||| | |||||||||||||||||||| Sbjct: 20981852 tggatttactgatgagatgatggagccacacgacaagctcaaggatatg 20981804 Score = 52.0 bits (26), Expect = 0.003 Identities = 41/46 (89%) Strand = Plus / Minus Query: 346 tccagagctttggtcctatcgatttcaaagtcgatgacaggaagca 391 |||| ||||||||||||||| || | ||||||||||||||||||| Sbjct: 20982192 tccaaagctttggtcctatccatctggaagtcgatgacaggaagca 20982147
>dbj|AK121670.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067N19, full insert sequence Length = 2746 Score = 73.8 bits (37), Expect = 7e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 473 tatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaatttcc 529 ||||||||| |||||||||||||||||| || |||||||| ||||| |||||||||| Sbjct: 2266 tatgtcttgactttgtgtcaaactcttgactcttgcttattccagggacgaatttcc 2210 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 683 tggattgactgatgagatgctgaagcgatacgacaagctcaaggatatg 731 |||||| |||||||||||| || ||| | |||||||||||||||||||| Sbjct: 2059 tggatttactgatgagatgatggagccacacgacaagctcaaggatatg 2011 Score = 52.0 bits (26), Expect = 0.003 Identities = 41/46 (89%) Strand = Plus / Minus Query: 346 tccagagctttggtcctatcgatttcaaagtcgatgacaggaagca 391 |||| ||||||||||||||| || | ||||||||||||||||||| Sbjct: 2399 tccaaagctttggtcctatccatctggaagtcgatgacaggaagca 2354
>dbj|AK064776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B01, full insert sequence Length = 2805 Score = 73.8 bits (37), Expect = 7e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 473 tatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaatttcc 529 ||||||||| |||||||||||||||||| || |||||||| ||||| |||||||||| Sbjct: 2322 tatgtcttgactttgtgtcaaactcttgactcttgcttattccagggacgaatttcc 2266 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 683 tggattgactgatgagatgctgaagcgatacgacaagctcaaggatatg 731 |||||| |||||||||||| || ||| | |||||||||||||||||||| Sbjct: 2115 tggatttactgatgagatgatggagccacacgacaagctcaaggatatg 2067 Score = 52.0 bits (26), Expect = 0.003 Identities = 41/46 (89%) Strand = Plus / Minus Query: 346 tccagagctttggtcctatcgatttcaaagtcgatgacaggaagca 391 |||| ||||||||||||||| || | ||||||||||||||||||| Sbjct: 2455 tccaaagctttggtcctatccatctggaagtcgatgacaggaagca 2410
>ref|NM_121085.1| Arabidopsis thaliana ATP binding / microtubule motor AT5G10470 mRNA, complete cds Length = 3822 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 548 gcatctcttgttcttgttgtgtcaga 573 ||||||| |||||||||||||||||| Sbjct: 1808 gcatctcctgttcttgttgtgtcaga 1783
>gb|AC134046.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0040G18, complete sequence Length = 172281 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 457 aacctgctttgcttcatatgtc 478 |||||||||||||||||||||| Sbjct: 70563 aacctgctttgcttcatatgtc 70542
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 457 aacctgctttgcttcatatgtc 478 |||||||||||||||||||||| Sbjct: 20741746 aacctgctttgcttcatatgtc 20741767
>emb|AL353995.1|ATF12B17 Arabidopsis thaliana DNA chromosome 5, BAC clone F12B17 (ESSA project) Length = 113053 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 548 gcatctcttgttcttgttgtgtcaga 573 ||||||| |||||||||||||||||| Sbjct: 71377 gcatctcctgttcttgttgtgtcaga 71352
>gb|AY100691.1| Arabidopsis thaliana geminivirus replication protein-interacting protein (GRIMP) mRNA, complete cds Length = 3822 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 548 gcatctcttgttcttgttgtgtcaga 573 ||||||| |||||||||||||||||| Sbjct: 1808 gcatctcctgttcttgttgtgtcaga 1783
>gb|AC134887.4| Oryza sativa chromosome 3 BAC OSJNBa0029P07 genomic sequence, complete sequence Length = 142047 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 457 aacctgctttgcttcatatgtc 478 |||||||||||||||||||||| Sbjct: 31856 aacctgctttgcttcatatgtc 31877
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 457 aacctgctttgcttcatatgtc 478 |||||||||||||||||||||| Sbjct: 4579979 aacctgctttgcttcatatgtc 4580000
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 457 aacctgctttgcttcatatgtc 478 |||||||||||||||||||||| Sbjct: 18328489 aacctgctttgcttcatatgtc 18328510
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 457 aacctgctttgcttcatatgtc 478 |||||||||||||||||||||| Sbjct: 13215021 aacctgctttgcttcatatgtc 13215042 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 457 aacctgctttgcttcatatgtc 478 |||||||||||||||||||||| Sbjct: 12145784 aacctgctttgcttcatatgtc 12145763 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 457 aacctgctttgcttcatatgt 477 ||||||||||||||||||||| Sbjct: 11675524 aacctgctttgcttcatatgt 11675544 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 457 aacctgctttgcttcatatgt 477 ||||||||||||||||||||| Sbjct: 11586845 aacctgctttgcttcatatgt 11586865
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 457 aacctgctttgcttcatatgtc 478 |||||||||||||||||||||| Sbjct: 20734775 aacctgctttgcttcatatgtc 20734796
>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0012F14 Length = 168629 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 457 aacctgctttgcttcatatgtc 478 |||||||||||||||||||||| Sbjct: 132209 aacctgctttgcttcatatgtc 132230
>dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0468A12 Length = 143018 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 457 aacctgctttgcttcatatgtc 478 |||||||||||||||||||||| Sbjct: 88573 aacctgctttgcttcatatgtc 88552
>dbj|AP005502.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0473F05 Length = 140575 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 457 aacctgctttgcttcatatgtc 478 |||||||||||||||||||||| Sbjct: 14658 aacctgctttgcttcatatgtc 14679
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 457 aacctgctttgcttcatatgtc 478 |||||||||||||||||||||| Sbjct: 4601230 aacctgctttgcttcatatgtc 4601251
>emb|AJ001729.1|ATTH65 Arabidopsis thaliana mRNA for Cdc2a associating protein Length = 1182 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 548 gcatctcttgttcttgttgtgtcaga 573 ||||||| |||||||||||||||||| Sbjct: 392 gcatctcctgttcttgttgtgtcaga 367
>ref|NM_195789.1| Oryza sativa (japonica cultivar-group) putative transposable element (OJ1325D05.26), mRNA Length = 2109 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 457 aacctgctttgcttcatatgt 477 ||||||||||||||||||||| Sbjct: 312 aacctgctttgcttcatatgt 292
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 555 ttgttcttgttgtgtcagagc 575 ||||||||||||||||||||| Sbjct: 4476170 ttgttcttgttgtgtcagagc 4476150
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 555 ttgttcttgttgtgtcagagc 575 ||||||||||||||||||||| Sbjct: 3034316 ttgttcttgttgtgtcagagc 3034336
>gb|AC115686.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1325D05, complete sequence Length = 169500 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 457 aacctgctttgcttcatatgt 477 ||||||||||||||||||||| Sbjct: 132779 aacctgctttgcttcatatgt 132759
>emb|BX640473.9| Zebrafish DNA sequence from clone CH211-201F12 in linkage group 5, complete sequence Length = 193735 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 aaattgctttttacaataaaa 105 ||||||||||||||||||||| Sbjct: 175104 aaattgctttttacaataaaa 175124
>gb|AC020632.16| Homo sapiens 3 BAC RP11-333H9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162029 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 ttttacaataaaatttccctt 113 ||||||||||||||||||||| Sbjct: 86480 ttttacaataaaatttccctt 86460
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 457 aacctgctttgcttcatatgt 477 ||||||||||||||||||||| Sbjct: 9055945 aacctgctttgcttcatatgt 9055965
>gb|AC119147.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0027A14, from chromosome 10, complete sequence Length = 175667 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 457 aacctgctttgcttcatatgt 477 ||||||||||||||||||||| Sbjct: 144168 aacctgctttgcttcatatgt 144188
>gb|AC096555.1| Homo sapiens BAC clone RP11-78N15 from 2, complete sequence Length = 155942 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 85 aaattgctttttacaataaaatttc 109 ||||||||||||| ||||||||||| Sbjct: 139177 aaattgctttttataataaaatttc 139201
>dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0005N06 Length = 140639 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 457 aacctgctttgcttcatatgt 477 ||||||||||||||||||||| Sbjct: 24066 aacctgctttgcttcatatgt 24086
>dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0414E10 Length = 141760 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 457 aacctgctttgcttcatatgt 477 ||||||||||||||||||||| Sbjct: 64731 aacctgctttgcttcatatgt 64751
>emb|AL807388.8| Mouse DNA sequence from clone RP23-255K14 on chromosome X, complete sequence Length = 157955 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 412 tctttcctgttaccactgctt 432 ||||||||||||||||||||| Sbjct: 19383 tctttcctgttaccactgctt 19403
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 457 aacctgctttgcttcatatgt 477 ||||||||||||||||||||| Sbjct: 9061084 aacctgctttgcttcatatgt 9061104 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,762,328 Number of Sequences: 3902068 Number of extensions: 6762328 Number of successful extensions: 141883 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 141309 Number of HSP's gapped (non-prelim): 568 length of query: 736 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 713 effective length of database: 17,143,297,704 effective search space: 12223171262952 effective search space used: 12223171262952 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)