ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal4j15 |
|---|---|
| Clone Library Name | barley_pub |
>UAP2_SCHPO (O43120) Splicing factor U2AF-associated protein 2| Length = 367 Score = 48.9 bits (115), Expect = 6e-06 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Frame = -1 Query: 442 PQXVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDGSI------KHALIRDYDAEVS 281 P VV V+F + ++ CV M GR+F GR + AS DG + KH L D + E Sbjct: 296 PDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRFQKSGKHTL-DDEEDEEK 354 Query: 280 RLERFGEELEES 245 RLE+F + LE S Sbjct: 355 RLEKFADWLENS 366
>U2AF1_MOUSE (Q9D883) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor| 35 kDa subunit) (U2 snRNP auxiliary factor small subunit) Length = 238 Score = 35.0 bits (79), Expect = 0.095 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -1 Query: 430 VLVKFKDRKDGLKCVEKMNGRWFGGRQIHA 341 V VKF+ +D K V +N RWF G+ IHA Sbjct: 112 VYVKFRREEDAEKAVIDLNNRWFNGQPIHA 141
>U2AF1_HUMAN (Q01081) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor| 35 kDa subunit) (U2 snRNP auxiliary factor small subunit) Length = 239 Score = 35.0 bits (79), Expect = 0.095 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -1 Query: 430 VLVKFKDRKDGLKCVEKMNGRWFGGRQIHA 341 V VKF+ +D K V +N RWF G+ IHA Sbjct: 112 VYVKFRREEDAEKAVIDLNNRWFNGQPIHA 141
>U2AF1_DROME (Q94535) Splicing factor U2af 38 kDa subunit (U2 auxiliary factor| 38 kDa subunit) (U2 snRNP auxiliary factor small subunit) Length = 264 Score = 34.7 bits (78), Expect = 0.12 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -1 Query: 430 VLVKFKDRKDGLKCVEKMNGRWFGGRQIHA 341 V +KF++ D K +N RWFGGR +++ Sbjct: 115 VYIKFRNEADAEKAANDLNNRWFGGRPVYS 144
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 30.4 bits (67), Expect = 2.3 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = -1 Query: 430 VLVKFKDRKDGLKCVEKMNGRWFGGRQIHAS 338 + VKF++ K + ++ RWFGGR I AS Sbjct: 557 IFVKFENADFAEKAITGLHQRWFGGRTIKAS 587
>TEGU_HCMV (P07387) Tegument protein (67 kDa phosphorylated protein)| Length = 549 Score = 30.4 bits (67), Expect = 2.3 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 258 SSPKRSSLDTSAS*SRMRACLIEPSSSLACICLPPNHLP 374 SSP R S++ + CL+ S++CI PPN P Sbjct: 400 SSPLREGTSGSSAHRPKQQCLLHCHQSISCILFPPNSSP 438
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 30.0 bits (66), Expect = 3.1 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = -1 Query: 424 VKFKDRKDGLKCVEKMNGRWFGGRQIHAS 338 V F ++ D +++M G+W GGRQI + Sbjct: 152 VSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 30.0 bits (66), Expect = 3.1 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = -1 Query: 424 VKFKDRKDGLKCVEKMNGRWFGGRQIHAS 338 V F ++ D +++M G+W GGRQI + Sbjct: 152 VSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
>SPF45_HUMAN (Q96I25) Splicing factor 45 (45 kDa splicing factor) (RNA-binding| motif protein 17) Length = 401 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -1 Query: 430 VLVKFKDRKDGLKCVEKMNGRWFGGRQIHA 341 + ++F+ + +K V +NGR+FGGR + A Sbjct: 355 IFLEFERVESAIKAVVDLNGRYFGGRVVKA 384
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = -1 Query: 457 FVKNHPQXVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDGSIK 317 F P+ V+F+D +D + +N +W GRQI G K Sbjct: 45 FYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRK 91
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/57 (26%), Positives = 28/57 (49%) Frame = -1 Query: 439 QXVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDGSIKHALIRDYDAEVSRLER 269 Q +K++D++ + V+ +NG GGR + K +L + Y+A L+R Sbjct: 72 QGFAYLKYEDQRSTILAVDNLNGFKIGGRALKIDHTFYRPKRSLQKYYEAVKEELDR 128
>SPF45_MOUSE (Q8JZX4) Splicing factor 45 (45 kDa splicing factor) (RNA-binding| motif protein 17) Length = 405 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -1 Query: 430 VLVKFKDRKDGLKCVEKMNGRWFGGRQIHA 341 + ++F+ + +K V +NGR+FGGR + A Sbjct: 359 IFLEFERVESAIKAVVDLNGRYFGGRVVKA 388
>ERCC6_HUMAN (Q03468) DNA excision repair protein ERCC-6 (EC 3.6.1.-)| (ATP-dependent helicase ERCC6) (Cockayne syndrome protein CSB) Length = 1493 Score = 28.9 bits (63), Expect = 6.8 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -3 Query: 416 QRPQRWSQMRREDERKMVWWEADTRERG*RFDQ 318 QR +RW+++R +D+ K + E D+ E FD+ Sbjct: 463 QRLRRWNKLRLQDKEKRLKLEDDSEESDAEFDE 495
>NISP_LACLA (Q07596) Nisin leader peptide-processing serine protease nisP| precursor (EC 3.4.21.-) Length = 682 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +3 Query: 189 RYQLQNSPKLPGDRKTCYVDSSNSSPKRSSLDT 287 R+ L NSP++ G+R VD N K SLDT Sbjct: 539 RFLLMNSPEVNGNRVLNIVDLLNGKNKAFSLDT 571
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -1 Query: 451 KNHPQXVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHAS 338 KN Q V VK + V ++GRWF G+ I A+ Sbjct: 467 KNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAA 504
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -1 Query: 451 KNHPQXVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHAS 338 KN Q V VK + V ++GRWF G+ I A+ Sbjct: 467 KNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAA 504
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -1 Query: 424 VKFKDRKDGLKCVEKMNGRWFGGRQIHAS 338 V F ++ D + M G+W GGRQI + Sbjct: 160 VSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
>JMT_BRARP (Q9SBK6) Jasmonate O-methyltransferase (EC 2.1.1.141)| (S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase) (Floral nectary-specific protein 1) Length = 392 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%) Frame = +2 Query: 341 RVYLPPTKPSSVHLLYA--FETIFAVF 415 ++YL T P S H +YA F+T F+VF Sbjct: 193 KIYLSKTSPKSAHKVYALQFQTDFSVF 219
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/47 (27%), Positives = 21/47 (44%) Frame = -1 Query: 457 FVKNHPQXVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDGSIK 317 F P+ V+F+D +D + ++ +W GRQI G K Sbjct: 45 FYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRK 91
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/47 (27%), Positives = 21/47 (44%) Frame = -1 Query: 457 FVKNHPQXVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDGSIK 317 F P+ V+F+D +D + ++ +W GRQI G K Sbjct: 45 FYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRK 91
>VGLB_HSVA1 (Q04463) Glycoprotein B precursor| Length = 933 Score = 28.5 bits (62), Expect = 8.9 Identities = 10/15 (66%), Positives = 13/15 (86%) Frame = +3 Query: 198 LQNSPKLPGDRKTCY 242 +QNS ++PGD KTCY Sbjct: 606 MQNSMRIPGDPKTCY 620
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -1 Query: 424 VKFKDRKDGLKCVEKMNGRWFGGRQIHAS 338 V F ++ D + M G+W GGRQI + Sbjct: 143 VSFYNKLDAENAIVHMGGQWLGGRQIRTN 171 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,964,329 Number of Sequences: 219361 Number of extensions: 1155436 Number of successful extensions: 3212 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3097 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3211 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
