ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4j09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 648 0.0
2gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 509 e-141
3gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 509 e-141
4gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 460 e-126
5gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 438 e-120
6gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 375 e-101
7emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat... 222 7e-55
8gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 176 3e-41
9dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
10dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
11dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
12dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
13dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 135 1e-28
14gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
15gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
16gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 133 5e-28
17dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 133 5e-28
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
20dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 133 5e-28
21gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 121 2e-24
22dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
23gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 101 2e-18
24dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
25dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
26gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 68 2e-08
27gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 68 2e-08
28gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 68 2e-08
29gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 68 2e-08
30gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca... 62 1e-06
31gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox... 58 2e-05
32gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox... 58 2e-05
33gb|AY110044.1| Zea mays CL1146_1 mRNA sequence 58 2e-05
34gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl... 44 0.33
35emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c... 44 0.33
36gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp... 42 1.3
37gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp... 42 1.3
38dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
39gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet... 42 1.3
40gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
41emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.3
42gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp... 42 1.3
43gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten... 40 5.2
44gb|U60105.1| Bos taurus large conductance calcium-activated pota... 40 5.2
45gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx... 40 5.2
46gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec... 40 5.2
47gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ... 40 5.2
48ref|XM_765396.1| Giardia lamblia ATCC 50803 heat shock protein (... 40 5.2
49ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001... 40 5.2
50gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 5.2
51gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 5.2
52gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 5.2
53gb|AF026000.2| Sus scrofa calcium-activated potassium channel al... 40 5.2
54gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc... 40 5.2
55ref|NM_174680.2| Bos taurus potassium large conductance calcium-... 40 5.2
56gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.2
57dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 5.2
58gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten... 40 5.2
59gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN... 40 5.2
60gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN... 40 5.2
61gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN... 40 5.2
62emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 5.2
63ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ... 40 5.2
64ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot... 40 5.2
65gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ... 40 5.2
66gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23... 40 5.2
67gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 5.2 
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  648 bits (327), Expect = 0.0
 Identities = 369/377 (97%), Gaps = 5/377 (1%)
 Strand = Plus / Minus

                                                                        
Query: 17   aatgggtatactnaatat-atttagagatatattaacaaaacatgcccagcaatcgcttg 75
            |||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 aatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaatcgcttg 1643

                                                                        
Query: 76   gatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgcttaaaag 134
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 gatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1583

                                                                        
Query: 135  gtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttggcattttg 193
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 gtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttggcattttg 1523

                                                                        
Query: 194  gtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacctcctccta 252
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1522 gtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacctcctccta 1463

                                                                        
Query: 253  tgcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaaggaaccagtct 311
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1462 tgcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaaggaaccagtct 1403

                                                                        
Query: 312  tcatcgcatcctggttagcatcacccagagctgcctggctcatgnaggtgtcagcaagct 371
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1402 tcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagct 1343

                             
Query: 372  gcacacgcttgacattg 388
            |||||||||||||||||
Sbjct: 1342 gcacacgcttgacattg 1326
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  509 bits (257), Expect = e-141
 Identities = 330/352 (93%), Gaps = 7/352 (1%)
 Strand = Plus / Minus

                                                                       
Query: 43  atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 96
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 687

                                                                       
Query: 97  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 156
           | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 686 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 628

                                                                       
Query: 157 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 216
           | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 627 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 568

                                                                       
Query: 217 gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 276
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 508

                                                                       
Query: 277 atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 336
           ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 507 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 448

                                                               
Query: 337 cagagctgcctggctcatgnaggtgtcagcaagctgcacacgcttgacattg 388
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 447 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattg 396
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  509 bits (257), Expect = e-141
 Identities = 330/352 (93%), Gaps = 7/352 (1%)
 Strand = Plus / Minus

                                                                        
Query: 43   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 96
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 97   ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 156
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 157  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 216
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                                                        
Query: 217  gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 276
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358

                                                                        
Query: 277  atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 336
            ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298

                                                                
Query: 337  cagagctgcctggctcatgnaggtgtcagcaagctgcacacgcttgacattg 388
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattg 1246
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>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  460 bits (232), Expect = e-126
 Identities = 244/247 (98%), Gaps = 1/247 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    tgtattggtctttgccaa-tgggtatactnaatatatttagagatatattaacaaaacat 59
            |||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||
Sbjct: 7769 tgtattggtctttgccaaatgggtatacacaatatatttagagatatattaacaaaacat 7710

                                                                        
Query: 60   gcccagcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaag 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7709 gcccagcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaag 7650

                                                                        
Query: 120  tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtag 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7649 tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtag 7590

                                                                        
Query: 180  ttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcct 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7589 ttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcct 7530

                   
Query: 240  ttacctc 246
            |||||||
Sbjct: 7529 ttacctc 7523



 Score =  285 bits (144), Expect = 5e-74
 Identities = 146/147 (99%)
 Strand = Plus / Minus

                                                                        
Query: 242  acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296

                                                                        
Query: 302  gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgnaggtg 361
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236

                                       
Query: 362  tcagcaagctgcacacgcttgacattg 388
            |||||||||||||||||||||||||||
Sbjct: 7235 tcagcaagctgcacacgcttgacattg 7209
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  438 bits (221), Expect = e-120
 Identities = 226/228 (99%)
 Strand = Plus / Minus

                                                                        
Query: 17   aatgggtatactnaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 76
            |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 1333

                                                                        
Query: 77   atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 1273

                                                                        
Query: 137  gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 1213

                                                            
Query: 197  ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 244
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165



 Score =  186 bits (94), Expect = 4e-44
 Identities = 96/97 (98%)
 Strand = Plus / Minus

                                                                        
Query: 292  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108

                                                 
Query: 352  catgnaggtgtcagcaagctgcacacgcttgacattg 388
            |||| ||||||||||||||||||||||||||||||||
Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattg 1071
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  375 bits (189), Expect = e-101
 Identities = 304/339 (89%), Gaps = 9/339 (2%)
 Strand = Plus / Minus

                                                                        
Query: 57   catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 110
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 111  -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 169
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 170  tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 229
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                                                                        
Query: 230  ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 289
             ||||||||||||||||||||||||||||||||||||||||  ||||||| ||| | |||
Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgg--gtgtatgaagagtgttc 1356

                                                                        
Query: 290  taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctgg 349
            |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296

                                                   
Query: 350  ctcatgnaggtgtcagcaagctgcacacgcttgacattg 388
            |||||| | ||||| ||||||||||||||||||||||||
Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattg 1257
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>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  222 bits (112), Expect = 7e-55
 Identities = 117/119 (98%)
 Strand = Plus / Minus

                                                                       
Query: 270 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 329
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249

                                                                      
Query: 330 catcacccagagctgcctggctcatgnaggtgtcagcaagctgcacacgcttgacattg 388
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattg 190
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  176 bits (89), Expect = 3e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 116  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 175
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 176  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 235
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 236  tcctttacc 244
            |||||||||
Sbjct: 1369 tcctttacc 1361



 Score =  147 bits (74), Expect = 3e-32
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                        
Query: 292  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 351
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304

                                                 
Query: 352  catgnaggtgtcagcaagctgcacacgcttgacattg 388
            |||| | ||||| ||||||||||||||||||||||||
Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattg 1267
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 125  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 185  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 241
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 242  acctcctcct 251
             |||||||||
Sbjct: 1394 ccctcctcct 1385



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 78/94 (82%)
 Strand = Plus / Minus

                                                                        
Query: 291  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 350
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251

                                              
Query: 351  tcatgnaggtgtcagcaagctgcacacgcttgac 384
            ||| | |    ||||| |||||||||||||||||
Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgac 1217
to top
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 125  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 185  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 241
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 242  acctcctcct 251
             |||||||||
Sbjct: 1432 ccctcctcct 1423



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 78/94 (82%)
 Strand = Plus / Minus

                                                                        
Query: 291  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 350
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289

                                              
Query: 351  tcatgnaggtgtcagcaagctgcacacgcttgac 384
            ||| | |    ||||| |||||||||||||||||
Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgac 1255
to top
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 125  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 185  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 241
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 242  acctcctcct 251
             |||||||||
Sbjct: 1431 ccctcctcct 1422



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 78/94 (82%)
 Strand = Plus / Minus

                                                                        
Query: 291  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 350
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288

                                              
Query: 351  tcatgnaggtgtcagcaagctgcacacgcttgac 384
            ||| | |    ||||| |||||||||||||||||
Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgac 1254
to top
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 125  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 185  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 241
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 242  acctcctcct 251
             |||||||||
Sbjct: 1215 ccctcctcct 1206



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 78/94 (82%)
 Strand = Plus / Minus

                                                                        
Query: 291  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 350
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072

                                              
Query: 351  tcatgnaggtgtcagcaagctgcacacgcttgac 384
            ||| | |    ||||| |||||||||||||||||
Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgac 1038
to top
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 125  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 185  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 241
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 242  acctcctcct 251
             |||||||||
Sbjct: 1436 ccctcctcct 1427



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 78/94 (82%)
 Strand = Plus / Minus

                                                                        
Query: 291  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 350
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293

                                              
Query: 351  tcatgnaggtgtcagcaagctgcacacgcttgac 384
            ||| | |    ||||| |||||||||||||||||
Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgac 1259
to top
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 125    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 185    ggcattttggtcggtgcaaccttccggcacgggca 219
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 81/97 (83%)
 Strand = Plus / Plus

                                                                          
Query: 288    tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 347
              |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365

                                                   
Query: 348    ggctcatgnaggtgtcagcaagctgcacacgcttgac 384
               ||||| | |    ||||| |||||||||||||||||
Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgac 108402



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 143    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 202
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 203    accttccggcacggg 217
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127
to top
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 125   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 185   ggcattttggtcggtgcaaccttccggcacgggca 219
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 81/97 (83%)
 Strand = Plus / Plus

                                                                         
Query: 288   tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 347
             |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242

                                                  
Query: 348   ggctcatgnaggtgtcagcaagctgcacacgcttgac 384
              ||||| | |    ||||| |||||||||||||||||
Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgac 30279



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 143   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 202
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 203   accttccggcacggg 217
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004
to top
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 125  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 185  ggcattttggtcggtgcaaccttccggcacgggca 219
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 78/94 (82%)
 Strand = Plus / Minus

                                                                        
Query: 291  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 350
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257

                                              
Query: 351  tcatgnaggtgtcagcaagctgcacacgcttgac 384
            ||| | |    ||||| |||||||||||||||||
Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgac 1223
to top
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 125  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 185  ggcattttggtcggtgcaaccttccggcacgggca 219
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                        
Query: 293  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 352
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250

                                            
Query: 353  atgnaggtgtcagcaagctgcacacgcttgac 384
            | | |    ||||| |||||||||||||||||
Sbjct: 1249 aagtactgctcagccagctgcacacgcttgac 1218
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 125      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 185      ggcattttggtcggtgcaaccttccggcacgggca 219
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 81/97 (83%)
 Strand = Plus / Plus

                                                                            
Query: 288      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 347
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504

                                                     
Query: 348      ggctcatgnaggtgtcagcaagctgcacacgcttgac 384
                 ||||| | |    ||||| |||||||||||||||||
Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgac 28303541



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 143      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 202
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 203      accttccggcacggg 217
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 125      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 185      ggcattttggtcggtgcaaccttccggcacgggca 219
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 81/97 (83%)
 Strand = Plus / Plus

                                                                            
Query: 288      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 347
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953

                                                     
Query: 348      ggctcatgnaggtgtcagcaagctgcacacgcttgac 384
                 ||||| | |    ||||| |||||||||||||||||
Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgac 28285990



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 143      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 202
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 203      accttccggcacggg 217
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715
to top
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 125  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 185  ggcattttggtcggtgcaaccttccggcacgggca 219
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                        
Query: 293  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 352
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285

                                            
Query: 353  atgnaggtgtcagcaagctgcacacgcttgac 384
            | | |    ||||| |||||||||||||||||
Sbjct: 1284 aagtactgctcagccagctgcacacgcttgac 1253
to top
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 131 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 190
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 191 ttggtcggtgcaaccttccggcacgggca 219
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5
to top
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  119 bits (60), Expect = 7e-24
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 125  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 185  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 241
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 242  acctcctcct 251
             |||||||||
Sbjct: 1443 ccctcctcct 1434



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 78/94 (82%)
 Strand = Plus / Minus

                                                                        
Query: 291  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 350
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300

                                              
Query: 351  tcatgnaggtgtcagcaagctgcacacgcttgac 384
            ||| | |    ||||| |||||||||||||||||
Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgac 1266
to top
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 125 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 185 ggcattttggtcggtgcaaccttccggcacgggca 219
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 125     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 185     ggcattttggtcggtgcaaccttccggcacgggca 219
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
to top
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 125   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 185   ggcattttggtcggtgcaaccttccggcacgggca 219
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
to top
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 135  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 194
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 195  tcggtgcaaccttc 208
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377
to top
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 135  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 194
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 195  tcggtgcaaccttc 208
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202
to top
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 135  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 194
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 195  tcggtgcaaccttc 208
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076
to top
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 135  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 194
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 195  tcggtgcaaccttc 208
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232
to top
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 78/94 (82%)
 Strand = Plus / Minus

                                                                       
Query: 291 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 350
           ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506

                                             
Query: 351 tcatgnaggtgtcagcaagctgcacacgcttgac 384
           ||| | |    ||||| |||||||||||||||||
Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgac 472
to top
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                       
Query: 297 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgn 356
           ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | | 
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                       
Query: 357 aggtgtcagcaagctgcacacgcttgac 384
           |  |||||||||||||||||||||||||
Sbjct: 859 acttgtcagcaagctgcacacgcttgac 832
to top
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                        
Query: 297  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgn 356
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | | 
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                        
Query: 357  aggtgtcagcaagctgcacacgcttgac 384
            |  |||||||||||||||||||||||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgac 1227
to top
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                        
Query: 297  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgn 356
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | | 
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                        
Query: 357  aggtgtcagcaagctgcacacgcttgac 384
            |  |||||||||||||||||||||||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgac 1227
to top
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 330   catcacccagagctgcctggct 351
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254
to top
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 30    aatatatttagagatatattaa 51
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963
to top
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 32    tatatttagagatatattaac 52
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335
to top
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 32    tatatttagagatatattaac 52
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 101     aaacatcagatattaaaagtg 121
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
to top
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 252   atgcagcaagagatggtgggt 272
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 101     aaacatcagatattaaaagtg 121
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
to top
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 101    aaacatcagatattaaaagtg 121
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423
to top
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 32   tatatttagagatatattaac 52
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197
to top
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   cctttacctcctcctatgca 256
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378
to top
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 330  catcacccagagctgcctggctca 353
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565
to top
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  cctttacctcctcctatgca 256
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656
to top
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 317  gcatcctggttagcatcacc 336
            ||||||||||||||||||||
Sbjct: 1355 gcatcctggttagcatcacc 1336
to top
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   cctttacctcctcctatgca 256
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964
to top
>ref|XM_765396.1| Giardia lamblia ATCC 50803 heat shock protein (hsp70) partial mRNA
          Length = 3732

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 7    ggtctttgccaatgggtata 26
            ||||||||||||||||||||
Sbjct: 2247 ggtctttgccaatgggtata 2266
to top
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 361 gtcagcaagctgcacacgct 380
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223
to top
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    tcagatattaaaagtggcat 125
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077
to top
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    tcagatattaaaagtggcat 125
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583
to top
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   tcagatattaaaagtggcat 125
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911
to top
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 330  catcacccagagctgcctggctca 353
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619
to top
>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    aatatatttagagatatatt 49
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473
to top
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 330  catcacccagagctgcctggctca 353
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935
to top
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 134  ggtgtaaaggcagctgccgtcgtcgctc 161
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
to top
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 54    aaacatgcccagcaatcgcttgga 77
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
to top
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   cctttacctcctcctatgca 256
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681
to top
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 330  catcacccagagctgcctggctca 353
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659
to top
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 330  catcacccagagctgcctggctca 353
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026
to top
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 330  catcacccagagctgcctggctca 353
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935
to top
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   tggcatgcttaaaaggtgta 139
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254
to top
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 330  catcacccagagctgcctggctca 353
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619
to top
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 226 cttgctgtgctcctttacctcctc 249
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625
to top
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   cctttacctcctcctatgca 256
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736
to top
>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    aatatatttagagatatatt 49
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485
to top
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 105    atcagatattaaaagtggcatgct 128
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,020,064
Number of Sequences: 3902068
Number of extensions: 3020064
Number of successful extensions: 60502
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60254
Number of HSP's gapped (non-prelim): 200
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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