ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4i12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TPP1_SCHPO (P78875) Trehalose-phosphatase (EC 3.1.3.12) (Trehalo... 53 5e-07
2TPS2_YEAST (P31688) Trehalose-phosphatase (EC 3.1.3.12) (Trehalo... 41 0.003
3NPD_VIBPA (Q87PH8) NAD-dependent deacetylase (EC 3.5.1.-) (Regul... 32 0.97
4YCF68_SACOF (Q6ENQ5) Hypothetical 14 kDa protein ycf68 (ORF 134) 32 1.3
5YCF68_SACHY (Q6L3C9) Hypothetical 14 kDa protein ycf68 (ORF 134) 32 1.3
6TPP_ENCCU (Q8SSL0) Probable trehalose-phosphatase (EC 3.1.3.12) ... 31 2.2
7YCF68_MAIZE (P03938) Hypothetical 14 kDa protein ycf68 (ORF 134) 31 2.2
8GLNE_STRAW (Q81ZW1) Glutamate-ammonia-ligase adenylyltransferase... 30 4.8
9PCCB_BACSU (P54541) Putative propionyl-CoA carboxylase beta chai... 30 6.3
10GLNE_STRCO (Q8CK02) Glutamate-ammonia-ligase adenylyltransferase... 30 6.3
11COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemph... 29 8.2
12PURL_CORGL (Q8NMI5) Phosphoribosylformylglycinamidine synthase I... 29 8.2

>TPP1_SCHPO (P78875) Trehalose-phosphatase (EC 3.1.3.12) (Trehalose 6-phosphate|
           phosphatase) (TPP)
          Length = 817

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
 Frame = -3

Query: 557 ILLDYDGTVMPDFVLCIGDDRSDEDMFESIVCPANGRVKLPATSEVFACTVG--KKPSMA 384
           IL  Y    +P F+ C GDDR+DEDMF S+    N R+    +   FA T+G  KK S+A
Sbjct: 741 ILSSYPEDSLPSFIFCAGDDRTDEDMFRSL--HKNTRINKETS---FAVTIGSDKKLSIA 795

Query: 383 KYYLDDTVDVIKMLQGLAN 327
            + + D  +VI +L  LAN
Sbjct: 796 DWCIADPANVIDILADLAN 814



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>TPS2_YEAST (P31688) Trehalose-phosphatase (EC 3.1.3.12) (Trehalose 6-phosphate|
           phosphatase) (TPP) (Trehalose synthase complex catalytic
           subunit TPS2)
          Length = 896

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
 Frame = -3

Query: 530 MPDFVLCIGDDRSDEDMFESI-VCPANGRVKLPATSE------VFACTVG--KKPSMAKY 378
           MPDFVLC+GDD +DEDMF  +       + K P           +  TVG   K ++AK 
Sbjct: 772 MPDFVLCLGDDFTDEDMFRQLNTIETCWKEKYPDQKNQWGNYGFYPVTVGSASKKTVAKA 831

Query: 377 YLDDTVDVIKML 342
           +L D   V++ L
Sbjct: 832 HLTDPQQVLETL 843



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>NPD_VIBPA (Q87PH8) NAD-dependent deacetylase (EC 3.5.1.-) (Regulatory protein|
           SIR2 homolog)
          Length = 241

 Score = 32.3 bits (72), Expect = 0.97
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
 Frame = +3

Query: 216 IDIISSVLFMLHFLPSSERALEGDPELHGPRPLLRRRVGEALQHLDHVHRVVQVVLGHAR 395
           + +I+  +  LH    S+  +     +HG   LL+ R  E+ Q ++H   +    L H  
Sbjct: 89  VTVITQNIDNLHERGGSQNVIH----MHGE--LLKARCSESNQVIEHTEDIKTGELCHCC 142

Query: 396 LLPHGAREHLARRRELHPAVGRAHDALEHV-------LVGPVVPDA--EHEVRHHGPVVV 548
            +P   R H+    E+   +G  + ALE           G V P A   H+ + HG   +
Sbjct: 143 QIPSQMRPHIVWFGEMRLRMGEIYAALEEADLFVSIGTSGVVYPAAGFVHDAKMHGAHTI 202

Query: 549 QEN 557
           + N
Sbjct: 203 EIN 205



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>YCF68_SACOF (Q6ENQ5) Hypothetical 14 kDa protein ycf68 (ORF 134)|
          Length = 134

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 303 PRPLLRRRVGEALQHLDHVHRVVQVVLGHARLLPHGAREHLARRRELHPAVGRAHDALEH 482
           P  LL RR+  A+Q   HV R    ++G  R    G    L+ R  +HP       +LEH
Sbjct: 13  PNKLLLRRIDGAIQVRSHVDRTFYSLVGSGR-SGGGPPRLLSSRESIHPLSVYGELSLEH 71

Query: 483 VLVGPVVPDAEHEVRH-HGP 539
            L   +    EH   H H P
Sbjct: 72  RLRFVLNGKMEHLTTHLHRP 91



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>YCF68_SACHY (Q6L3C9) Hypothetical 14 kDa protein ycf68 (ORF 134)|
          Length = 134

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 303 PRPLLRRRVGEALQHLDHVHRVVQVVLGHARLLPHGAREHLARRRELHPAVGRAHDALEH 482
           P  LL RR+  A+Q   HV R    ++G  R    G    L+ R  +HP       +LEH
Sbjct: 13  PNKLLLRRIDGAIQVRSHVDRTFYSLVGSGR-SGGGPPRLLSSRESIHPLSVYGELSLEH 71

Query: 483 VLVGPVVPDAEHEVRH-HGP 539
            L   +    EH   H H P
Sbjct: 72  RLRFVLNGKMEHLTTHLHRP 91



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>TPP_ENCCU (Q8SSL0) Probable trehalose-phosphatase (EC 3.1.3.12) (Trehalose|
           6-phosphate phosphatase) (TPP)
          Length = 718

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 22/62 (35%), Positives = 30/62 (48%)
 Frame = -3

Query: 521 FVLCIGDDRSDEDMFESIVCPANGRVKLPATSEVFACTVGKKPSMAKYYLDDTVDVIKML 342
           FVLC GDD +DEDMF+  VC              +   VG + + A Y + D  +  +ML
Sbjct: 668 FVLCAGDDVADEDMFD--VCKG------------YTIKVGDQSTSAAYRVKDP-ENFRML 712

Query: 341 QG 336
            G
Sbjct: 713 LG 714



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>YCF68_MAIZE (P03938) Hypothetical 14 kDa protein ycf68 (ORF 134)|
          Length = 134

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 303 PRPLLRRRVGEALQHLDHVHRVVQVVLGHARLLPHGAREHLARRRELHPAVGRAHDALEH 482
           P  LL RR+  A+Q   HV R    ++G  R    G    L+ R  +HP       +LEH
Sbjct: 13  PNKLLLRRIDGAIQVRSHVDRTFYSLVGSGR-SGGGPPGLLSSRESIHPLSVYGELSLEH 71

Query: 483 VLVGPVVPDAEHEVRH-HGP 539
            L   +    EH   H H P
Sbjct: 72  RLRFVLNGKMEHLTTHLHRP 91



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>GLNE_STRAW (Q81ZW1) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
           ([Glutamate--ammonia-ligase] adenylyltransferase)
           (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 1000

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 321 RRVGEALQHLDHVHRVVQVVLGHARLLPHGAREHLARRRELHPAVGRAH 467
           RR+ E L +   +  V Q+  G ARL P+ ARE L       PA    H
Sbjct: 470 RRLHEKLFYRPLLDAVAQLAPGEARLSPNAARERLVALGYADPAAALRH 518



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>PCCB_BACSU (P54541) Putative propionyl-CoA carboxylase beta chain (EC 6.4.1.3)|
           (PCCase) (Propanoyl-CoA:carbon dioxide ligase)
          Length = 506

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 219 DIISSVLFMLHFLPSSERALEGDPELHGPRPLLRRRV 329
           ++++ V  +L +LP + R  E  PE    RPLL R V
Sbjct: 229 EVLTGVRKLLSYLPLNGRTTEPKPEKEASRPLLNRLV 265



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>GLNE_STRCO (Q8CK02) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
           ([Glutamate--ammonia-ligase] adenylyltransferase)
           (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 999

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +3

Query: 321 RRVGEALQHLDHVHRVVQVVLGHARLLPHGAREHLARRRELHPAVGRAH 467
           RR+ E L +   +  V Q+  G ARL P  ARE L       PA    H
Sbjct: 472 RRLHEKLFYRPLLDAVAQLAPGEARLSPEAARERLVALGYADPAAALRH 520



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>COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2)|
            (180 kDa bullous pemphigoid antigen 2) (Fragment)
          Length = 1146

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 438  PGDERGVRVHRGEEAEHGQVLPGRHGGRDQ 349
            P  E+G R + G + + G + PGRHG  DQ
Sbjct: 1059 PPGEKGERGYPGPKGDPGPMGPGRHGRGDQ 1088



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>PURL_CORGL (Q8NMI5) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 762

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 10  YNVTGSNLFSHSMVMGRAYVYACVRDEVGNVNPKEERNLFIL 135
           YN TG      + V+G   V   V   +GNV P E+ +L++L
Sbjct: 555 YNQTGDEPILPTPVVGVLGVLDNVEQSIGNVLPSEDNDLYLL 596


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,867,629
Number of Sequences: 219361
Number of extensions: 1232771
Number of successful extensions: 4093
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4091
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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