ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal4i02 |
|---|---|
| Clone Library Name | barley_pub |
>YIGL_ECOLI (P27848) Hypothetical protein yigL| Length = 266 Score = 37.7 bits (86), Expect = 0.033 Identities = 24/67 (35%), Positives = 36/67 (53%) Frame = -3 Query: 523 LDILAQRAGKGQALAYLLKKLGSCGKTPNNTLVCGDSGNDAELFSIPGVHGVMVSNAQEE 344 L+++A KG AL + KKLG K + + GD NDAE+ S+ G G ++ +A + Sbjct: 182 LEVMAGGVSKGHALEAVAKKLGYSLK---DCIAFGDGMNDAEMLSMAG-KGCIMGSAHQR 237 Query: 343 LLQWHAE 323 L H E Sbjct: 238 LKDLHPE 244
>YIGL_ECO57 (Q8X8L6) Hypothetical protein yigL| Length = 266 Score = 37.7 bits (86), Expect = 0.033 Identities = 24/67 (35%), Positives = 36/67 (53%) Frame = -3 Query: 523 LDILAQRAGKGQALAYLLKKLGSCGKTPNNTLVCGDSGNDAELFSIPGVHGVMVSNAQEE 344 L+++A KG AL + KKLG K + + GD NDAE+ S+ G G ++ +A + Sbjct: 182 LEVMAGGVSKGHALEAVAKKLGYSLK---DCIAFGDGMNDAEMLSMAG-KGCIMGSAHQR 237 Query: 343 LLQWHAE 323 L H E Sbjct: 238 LKDLHPE 244
>Y381_MYCPN (P75401) Hypothetical protein MG263 homolog (A19_orf292)| Length = 292 Score = 35.8 bits (81), Expect = 0.12 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Frame = -3 Query: 652 NSVHIRSAFWSTRRTLKGVIKSLSDKFEKRGVDAKIIYSGGQDLDILAQRAGKGQALAYL 473 N++ + ++ T + +I+ L + EK V AK S L I+ + K AL L Sbjct: 168 NNMKVNQVYFDTFTCPEPMIQELDNLVEKSDVTAK---SYRHSLYIIKKGVSKASALQNL 224 Query: 472 LKKLGSCGKTPNNTLVCGDSGNDAELFSIPGVHGVMVSNAQEE---LLQWHAENAKDN 308 + P NT+V GD ND E+ H V ++ + E L ++H ++ D+ Sbjct: 225 QRDF-LVEMKPANTIVFGDGDNDIEMMQWAD-HSVSLTGSDPECYKLAKYHTDSVDDD 280
>SUPH_ECOLI (P75792) Sugar phosphatase supH (EC 3.1.3.23)| Length = 271 Score = 35.4 bits (80), Expect = 0.16 Identities = 28/99 (28%), Positives = 44/99 (44%) Frame = -3 Query: 550 KIIYSGGQDLDILAQRAGKGQALAYLLKKLGSCGKTPNNTLVCGDSGNDAELFSIPGVHG 371 K + SG +D++ K ++ LLK+ +P N + GDSGNDAE+ + + Sbjct: 174 KPVTSGFGFIDLIIPGLHKANGISRLLKRWDL---SPQNVVAIGDSGNDAEMLKM-ARYS 229 Query: 370 VMVSNAQEELLQWHAENAKDNPKIIHATERCAAGIIQAI 254 + NA E + Q DN A +IQA+ Sbjct: 230 FAMGNAAENIKQIARYATDDN------NHEGALNVIQAV 262
>NTDB_BACSU (O07565) NTD biosynthesis operon putative hydrolase ntdB (EC| 3.-.-.-) Length = 286 Score = 33.1 bits (74), Expect = 0.80 Identities = 18/66 (27%), Positives = 31/66 (46%) Frame = -3 Query: 526 DLDILAQRAGKGQALAYLLKKLGSCGKTPNNTLVCGDSGNDAELFSIPGVHGVMVSNAQE 347 D+D + GK + + ++L+K + GDSGND + G +G ++ NA + Sbjct: 199 DVDFIPIGTGKNEIVTFMLEKYNL---NTERAIAFGDSGNDVRMLQTVG-NGYLLKNATQ 254 Query: 346 ELLQWH 329 E H Sbjct: 255 EAKNLH 260
>PGP_METKA (Q8TYT9) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)| Length = 232 Score = 32.7 bits (73), Expect = 1.0 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 7/99 (7%) Frame = -3 Query: 616 RRTLKGVIKSLSDKFEKRGVDAKIIYSG-------GQDLDILAQRAGKGQALAYLLKKLG 458 RRT + + + + +R +D + YSG G + ++R KG+ L + ++LG Sbjct: 110 RRTEVAIYRDVPIEEVERVLDG-LGYSGRIEVVDTGFAYHLKSKRVDKGKGLLVICERLG 168 Query: 457 SCGKTPNNTLVCGDSGNDAELFSIPGVHGVMVSNAQEEL 341 P++ + GD NDA L G+ GV +NA E + Sbjct: 169 I---DPDDVVAIGDGDNDAPLLKAAGL-GVAPANATENV 203
>PGP_SULTO (Q96YM5) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)| Length = 226 Score = 32.3 bits (72), Expect = 1.4 Identities = 28/80 (35%), Positives = 41/80 (51%) Frame = -3 Query: 580 DKFEKRGVDAKIIYSGGQDLDILAQRAGKGQALAYLLKKLGSCGKTPNNTLVCGDSGNDA 401 DK +K +AKI ++ D I+ + KG+A+ L L G T + GDS ND Sbjct: 116 DKLDKIN-EAKIEWNRS-DAMIMPKNVSKGEAVKILKSILNFEGVT----IAIGDSQNDI 169 Query: 400 ELFSIPGVHGVMVSNAQEEL 341 LFS+ + V V+NA E+ Sbjct: 170 SLFSVADIK-VAVANALPEI 188
>PGP_PICTO (Q6KZ42) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)| Length = 236 Score = 31.6 bits (70), Expect = 2.3 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Frame = -3 Query: 544 IYSGGQDLDILAQRAGKGQALAYLLKKLGSCGKTP-NNTLVCGDSGNDAELFSIPGVHGV 368 I G L IL KGQ + +KK+ NN LV GDS ND +FS+ G Sbjct: 146 IVDSGFTLHIL----NKGQDKGFAVKKMIDIMNIDYNNVLVIGDSQNDESMFSL-GTLSA 200 Query: 367 MVSNAQEEL 341 NA E++ Sbjct: 201 CPGNASEKI 209
>PGP_THEVO (Q97C22) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)| Length = 224 Score = 31.6 bits (70), Expect = 2.3 Identities = 20/63 (31%), Positives = 31/63 (49%) Frame = -3 Query: 571 EKRGVDAKIIYSGGQDLDILAQRAGKGQALAYLLKKLGSCGKTPNNTLVCGDSGNDAELF 392 EKRG+ +++ G ++ + KG A+ L +K G LV GDS ND +F Sbjct: 129 EKRGL---VVFYSGYSWHLMNKGEDKGFAVKILKEKYGL---NYEEILVVGDSNNDMPMF 182 Query: 391 SIP 383 +P Sbjct: 183 ELP 185
>PGP_METMA (Q8PZN6) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)| Length = 226 Score = 31.2 bits (69), Expect = 3.1 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = -3 Query: 475 LLKKLGSCGKTPNNTLVCGDSGNDAELFSIPGVHGVMVSNAQEEL 341 L K G G + + GDS NDAE+F G G+ V+N E + Sbjct: 154 LQKLAGMMGFEAEDFVAIGDSANDAEMFEAAG-FGIAVANGDERV 197
>DNAJ_LACAC (Q84BU3) Chaperone protein dnaJ| Length = 384 Score = 31.2 bits (69), Expect = 3.1 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -2 Query: 380 CTWCHG*QCPRGTTPVACRKCEG 312 C C G C +GT P+ C KC G Sbjct: 154 CETCGGNGCEKGTHPITCDKCHG 176
>DNAJ_PHOLL (Q7N8Y3) Chaperone protein dnaJ| Length = 372 Score = 30.8 bits (68), Expect = 4.0 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -2 Query: 401 RIIQYPWCTWCHG*QCPRGTTPVACRKCEG 312 RI C CHG GT+PV C C+G Sbjct: 133 RIPTLETCDICHGSGAKAGTSPVTCSTCQG 162
>Y169_HELPY (P56113) Putative protease HP0169 precursor (EC 3.4.-.-)| Length = 422 Score = 30.4 bits (67), Expect = 5.2 Identities = 25/83 (30%), Positives = 36/83 (43%) Frame = -3 Query: 502 AGKGQALAYLLKKLGSCGKTPNNTLVCGDSGNDAELFSIPGVHGVMVSNAQEELLQWHAE 323 A G+ L L+K G+ PN D D E + +GVM+ +EE + H Sbjct: 173 AFSGRCLISALQK----GRVPNRGSCANDCRFDYEYYVKNPDNGVMMRLVEEEGVGTHIF 228 Query: 322 NAKDNPKIIHATERCAAGIIQAI 254 NAKD H E ++ I A+ Sbjct: 229 NAKDLNLSGHIAEILSSNAISAL 251
>Y155_HELPJ (Q9ZMR3) Putative protease jhp_0155 precursor (EC 3.4.-.-)| Length = 422 Score = 30.4 bits (67), Expect = 5.2 Identities = 25/83 (30%), Positives = 36/83 (43%) Frame = -3 Query: 502 AGKGQALAYLLKKLGSCGKTPNNTLVCGDSGNDAELFSIPGVHGVMVSNAQEELLQWHAE 323 A G+ L L+K G+ PN D D E + +GVM+ +EE + H Sbjct: 173 AFSGRCLISALQK----GRVPNRGSCANDCRFDYEYYVKNPDNGVMMRLVEEEGVGTHIF 228 Query: 322 NAKDNPKIIHATERCAAGIIQAI 254 NAKD H E ++ I A+ Sbjct: 229 NAKDLNLSGHIAEILSSNAISAL 251
>DP13A_HUMAN (Q9UKG1) DCC-interacting protein 13 alpha (Dip13 alpha) (Adapter| protein containing PH domain, PTB domain and leucine zipper motif 1) Length = 709 Score = 30.4 bits (67), Expect = 5.2 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = +3 Query: 381 PGI--LNNSASLPESPQTRVLLGVFPHEPNFLSKY 479 PGI L +L +SPQTR LLGVF + +S Y Sbjct: 2 PGIDKLPIEETLEDSPQTRSLLGVFEEDATAISNY 36
>DP13A_MOUSE (Q8K3H0) DCC-interacting protein 13 alpha (Dip13 alpha) (Adapter| protein containing PH domain, PTB domain and leucine zipper motif 1) Length = 707 Score = 30.4 bits (67), Expect = 5.2 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = +3 Query: 381 PGI--LNNSASLPESPQTRVLLGVFPHEPNFLSKY 479 PGI L +L +SPQTR LLGVF + +S Y Sbjct: 2 PGIDKLPIEETLEDSPQTRSLLGVFEEDATAISNY 36
>PGP_HALMA (Q5V1R7) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)| Length = 227 Score = 30.4 bits (67), Expect = 5.2 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = -3 Query: 442 PNNTLVCGDSGNDAELFSIPGVHGVMVSNAQEELLQ 335 P L GDS NDA++F + G V V+NA E L+ Sbjct: 170 PAEFLAVGDSVNDAQMFDLAG-EAVAVANADETALE 204
>DNAJ_BORBR (Q7WGI5) Chaperone protein dnaJ| Length = 373 Score = 30.0 bits (66), Expect = 6.8 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 401 RIIQYPWCTWCHG*QCPRGTTPVACRKCEG 312 R+ + C CHG GT+P CR C G Sbjct: 139 RVPSWENCDTCHGSGAKAGTSPKTCRTCGG 168
>PCXA_PSEPU (P00436) Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3)| (3,4-PCD) Length = 200 Score = 30.0 bits (66), Expect = 6.8 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +3 Query: 312 SFAFSACHWSSSSWALLTMTPCTPGILNNSASLPESPQTRVLL 440 SF +A + + W L T+ P G++NN+A +P +P + L Sbjct: 91 SFGRTATTFDAGEWTLHTVKP---GVVNNAAGVPMAPHINISL 130
>RIR2_SCHPO (P36603) Ribonucleoside-diphosphate reductase small chain (EC| 1.17.4.1) (Ribonucleotide reductase small subunit) Length = 391 Score = 30.0 bits (66), Expect = 6.8 Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 4/23 (17%) Frame = +1 Query: 508 ELICRDPGHH----CRLFSHLPH 564 ELICRD G H C +FSHL H Sbjct: 257 ELICRDEGLHTDFACLMFSHLKH 279
>DNAJ_BORPA (Q7W520) Chaperone protein dnaJ| Length = 377 Score = 30.0 bits (66), Expect = 6.8 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 401 RIIQYPWCTWCHG*QCPRGTTPVACRKCEG 312 R+ + C CHG GT+P CR C G Sbjct: 143 RVPSWENCDTCHGSGAKAGTSPKTCRTCGG 172
>PSPB_HUMAN (P07988) Pulmonary surfactant-associated protein B precursor (SP-B)| (6 kDa protein) (Pulmonary surfactant-associated proteolipid SPL(Phe)) (18 kDa pulmonary-surfactant protein) Length = 381 Score = 30.0 bits (66), Expect = 6.8 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = -3 Query: 103 VIDYFKNITDANGVIIH 53 VIDYF+N TD+NG+ +H Sbjct: 123 VIDYFQNQTDSNGICMH 139
>DNAJ_BORPE (Q7VVY3) Chaperone protein dnaJ| Length = 385 Score = 30.0 bits (66), Expect = 6.8 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 401 RIIQYPWCTWCHG*QCPRGTTPVACRKCEG 312 R+ + C CHG GT+P CR C G Sbjct: 151 RVPSWENCDTCHGSGAKAGTSPKTCRTCGG 180
>DNAJ_SYMTH (Q67S53) Chaperone protein dnaJ| Length = 386 Score = 29.6 bits (65), Expect = 8.9 Identities = 12/23 (52%), Positives = 12/23 (52%) Frame = -2 Query: 380 CTWCHG*QCPRGTTPVACRKCEG 312 C CHG GT PV C KC G Sbjct: 152 CDTCHGSGARPGTQPVTCPKCGG 174
>DNAJ_CLOPE (Q8XIT1) Chaperone protein dnaJ| Length = 387 Score = 29.6 bits (65), Expect = 8.9 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = -2 Query: 380 CTWCHG*QCPRGTTPVACRKCEG 312 C CHG GT+P C KC G Sbjct: 157 CETCHGTGAKAGTSPKTCPKCNG 179
>GLBC_NIPBR (P51536) Globin, cuticular isoform precursor| Length = 173 Score = 29.6 bits (65), Expect = 8.9 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = -3 Query: 649 SVHIRSAFWSTRRTLKGVIKSLSDKFEKRGVDAKI 545 +VH+ + + + G ++ L ++ EKRGVD K+ Sbjct: 88 AVHVLANVYDNQAVFHGFVRELMNRHEKRGVDPKL 122
>CSPG4_RAT (Q00657) Chondroitin sulfate proteoglycan 4 precursor (Chondroitin| sulfate proteoglycan NG2) (HSN tumor-specific antigen) Length = 2326 Score = 29.6 bits (65), Expect = 8.9 Identities = 14/36 (38%), Positives = 24/36 (66%) Frame = +3 Query: 342 SSSWALLTMTPCTPGILNNSASLPESPQTRVLLGVF 449 S+SWA+L++ G+LN SA +P++ +V G+F Sbjct: 117 SNSWAVLSVD----GVLNTSAPIPKASHLKVPYGLF 148 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,640,510 Number of Sequences: 219361 Number of extensions: 2054988 Number of successful extensions: 5500 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 5320 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5499 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
