>NPLP3_DROME (Q9VV28) Neuropeptide-like 3 precursor [Contains: SHA-peptide;|
           VVI-amide peptide]
          Length = 90

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 352 SPTRSPAACGPGRLAPSSWGENLVSRKSSILTPSFMQIV 236
           +P  +P   GPG +AP  WG  +V   S +L P  + +V
Sbjct: 23  APAPAPGLIGPGIVAPGIWGPTVVG--SPLLAPQVVSVV 59

>AGI_URTDI (P11218) Lectin/endochitinase precursor (EC 3.2.1.14) (Agglutinin)|
           (UDA)
          Length = 372

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
 Frame = -3

Query: 403 WTWCGRCSP---GGCRCACWSPTRSPAACG 323
           W WCG   P     C   CWS  RS   CG
Sbjct: 44  WGWCGDSEPYCGRTCENKCWSGERSDHRCG 73

>MUTS_DEHE1 (Q3Z767) DNA mismatch repair protein mutS|
          Length = 858

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +3

Query: 204 MRCIHGRIRQKTICMNEGVRMEDFLETRFSPHDEGANLPGPHAAGDLVG 350
           M  I  RIRQKTI   E + +++ LET  + H +   +P P  A  L G
Sbjct: 345 MERIANRIRQKTILPKELISLKNSLETVSAIHRQFGLMPPPRLAYFLNG 393

>GBF1_CRIGR (Q9R1D7) Golgi-specific brefeldin A-resistance guanine nucleotide|
            exchange factor 1 (BFA-resistant GEF 1)
          Length = 1856

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -3

Query: 394  CGRCSPGGCRCACWSPTRSPAACGPGRLAPSSWGENLVSRKSSILTP 254
            C    P G R    S   SP A  P RL+PS  G   +++   IL P
Sbjct: 1763 CDSEKPEGTRATSSSSPGSPVASSPSRLSPSPEGPPPLAQPPLILQP 1809

>ANK2_HUMAN (Q01484) Ankyrin-2 (Brain ankyrin) (Ankyrin-B) (Ankyrin,|
            nonerythroid)
          Length = 3924

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 274  SWKRDFHPTTKGPISPARMPRAISLATSRHTDTH-PASTAHTMSSMYAASPRG 429
            S + + HP    P+SP R  + + ++ S  TD H P STA         SP G
Sbjct: 1886 SGRTEKHP----PVSPGRTEKRLPVSPSGRTDKHQPVSTAGKTEKHLPVSPSG 1934

>KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-associated protein|
           5.3) (Ultrahigh sulfur keratin-associated protein 5.3)
           (Keratin-associated protein 5-9) (Keratin-associated
           protein 5.9) (UHS KerB-like)
          Length = 238

 Score = 26.9 bits (58), Expect(2) = 7.3
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = -3

Query: 406 CWTWCGRC--SPGGCRCACWSPTRSPAACG 323
           C   CG C  S GGC  +C  P    ++CG
Sbjct: 73  CKGGCGSCGGSKGGCGSSCCVPVCCSSSCG 102



 Score = 21.2 bits (43), Expect(2) = 7.3
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -1

Query: 540 GRSGSSPTPSCRLGVCGIACLLCNSSGSGVREG 442
           G SG S       G CG +C  C S   G   G
Sbjct: 2   GCSGCSGGCGSSCGGCGSSCGGCGSGYGGCGSG 34

>HUNB_MUSDO (Q01778) Protein hunchback|
          Length = 817

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
 Frame = +1

Query: 295 PTTKGPISPARMPRAI-----------SLATSRHTDTHPASTAHTMSSMYAASPRGIVIL 441
           PTT  PI P+++               S+ T  H   H  +TA+T +S  A+S       
Sbjct: 682 PTTSSPIHPSQVNGVAAGAADHSSADESMETGHHHHHHNPTTANTSASSTASSSGNSSNS 741

Query: 442 SFPYPXXXXXXXXXGNSTNT 501
           S             GNS NT
Sbjct: 742 SSTSTSSNSNSSSAGNSPNT 761

>DPO3A_BUCAP (Q8K9S3) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1161

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
 Frame = +3

Query: 54  NCLHDYQKYRTEGLYKER-REQKHHLESVTSVNGEAIQLNTNGDLGTLYSTMRCIHG--- 221
           +CLH Y+KY +   Y E  R  + + E   S+   A+ L+ + ++  + +   C      
Sbjct: 154 DCLHFYEKYFSGFYYLELIRTYRENEEKYLSL---AVDLSYSQNIPVVATNDVCFLNKED 210

Query: 222 -RIRQKTICMNEGVRM-EDFLETRFSPH 299
            +I +  I +NEGVR+ E  ++  +S H
Sbjct: 211 FKIHKIRIAINEGVRLKESKIQNNYSKH 238


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,391,792
Number of Sequences: 219361
Number of extensions: 1757682
Number of successful extensions: 5832
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5822
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)