ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal4g17 |
|---|---|
| Clone Library Name | barley_pub |
>MFGM_PIG (P79385) Lactadherin (Milk fat globule-EGF factor 8) (MFG-E8)| (MFGM) (Sperm surface protein SP47) (PP47) Length = 409 Score = 33.1 bits (74), Expect = 0.76 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -3 Query: 620 KVTGECIKHSTGQGHPVKLVPYNPAYQDESVLWTESRDVG 501 +VTG + + GH + Y AY D+ V WTE RD G Sbjct: 320 RVTGIITQGARDFGHIQYVAAYKVAYSDDGVSWTEYRDQG 359
>COL7_CAEEL (P18832) Cuticle collagen 7 precursor| Length = 316 Score = 32.0 bits (71), Expect = 1.7 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%) Frame = -2 Query: 585 PGPPREAGAV----QPGVPGRVGAVDGEPRRGQGLP 490 PGPP AG+ Q G PG G+ +RG+GLP Sbjct: 171 PGPPGPAGSAGSPGQAGAPGNPGSPGKSGQRGRGLP 206
>MFGM_BOVIN (Q95114) Lactadherin precursor (Milk fat globule-EGF factor 8)| (MFG-E8) (MGP57/53) (PAS-6/PAS-7 glycoprotein) (MFGM) (Sperm surface protein SP47) (BP47) (Components 15/16) Length = 427 Score = 31.6 bits (70), Expect = 2.2 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -3 Query: 620 KVTGECIKHSTGQGHPVKLVPYNPAYQDESVLWTESRDVG 501 +VTG + + GH + Y AY D+ V WTE +D G Sbjct: 338 RVTGIITQGARDFGHIQYVAAYRVAYGDDGVTWTEYKDPG 377
>END8_ECOLI (P50465) Endonuclease VIII (DNA glycosylase/AP lyase Nei) (EC| 3.2.2.-) (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase Nei) Length = 262 Score = 30.4 bits (67), Expect = 4.9 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +1 Query: 1 RVAQYRSQYQENTVELHQSSDLRIMVPPHSLQHPLLPRSNAD 126 RV + + Q + T+ L+ +SD+ ++ P HP L R D Sbjct: 87 RVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPD 128
>END8_ECOL6 (Q8FJU5) Endonuclease VIII (DNA glycosylase/AP lyase Nei) (EC| 3.2.2.-) (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase Nei) Length = 262 Score = 30.4 bits (67), Expect = 4.9 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +1 Query: 1 RVAQYRSQYQENTVELHQSSDLRIMVPPHSLQHPLLPRSNAD 126 RV + + Q + T+ L+ +SD+ ++ P HP L R D Sbjct: 87 RVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPD 128
>END8_ECO57 (Q8X9C6) Endonuclease VIII (DNA glycosylase/AP lyase Nei) (EC| 3.2.2.-) (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase Nei) Length = 262 Score = 30.4 bits (67), Expect = 4.9 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +1 Query: 1 RVAQYRSQYQENTVELHQSSDLRIMVPPHSLQHPLLPRSNAD 126 RV + + Q + T+ L+ +SD+ ++ P HP L R D Sbjct: 87 RVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPD 128
>WCAI_ECOLI (P32057) Putative colanic acid biosynthesis glycosyl transferase| wcaI Length = 407 Score = 30.4 bits (67), Expect = 4.9 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%) Frame = -3 Query: 641 PAFAIVNKVTGECIKHSTGQGHPVKLV---PYNPAYQ--DESVLWTESRDVGKG--FRC 486 P + K TGE ++ QGH V+++ PY P +Q + W R+ G +RC Sbjct: 12 PELTGIGKYTGEMVEWLAAQGHEVRVITAPPYYPQWQVGENYSAWRYKREEGAATVWRC 70
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 30.0 bits (66), Expect = 6.4 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = -2 Query: 597 ALHRPGPPREAG-AVQPGVPGRVGAVDGEPRRGQGLPLRAHGE 472 A R GPP +G A PG PG VG G+ RG+ P GE Sbjct: 868 AAGRVGPPGPSGNAGPPGPPGPVGKEGGKGPRGETGPAGRPGE 910
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 30.0 bits (66), Expect = 6.4 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = -2 Query: 597 ALHRPGPPREAG-AVQPGVPGRVGAVDGEPRRGQGLPLRAHGE 472 A R GPP +G A PG PG VG G+ RG+ P GE Sbjct: 868 AAGRVGPPGPSGNAGPPGPPGPVGKEGGKGPRGETGPAGRPGE 910
>MK03_HUMAN (P27361) Mitogen-activated protein kinase 3 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 1) (ERK-1) (Insulin-stimulated MAP2 kinase) (MAP kinase 1) (MAPK 1) (p44-ERK1) (ERT2) (p44-MAPK) (Microtubule-associated protein 2 kinase) Length = 379 Score = 30.0 bits (66), Expect = 6.4 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -2 Query: 582 GPPREAGAVQPGVPGRVGAVDGEP 511 G PR V PGVPG V V G+P Sbjct: 12 GEPRRTEGVGPGVPGEVEMVKGQP 35
>GLPK1_SULAC (Q4J9R1) Glycerol kinase 1 (EC 2.7.1.30) (ATP:glycerol| 3-phosphotransferase 1) (Glycerokinase 1) (GK 1) Length = 498 Score = 30.0 bits (66), Expect = 6.4 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Frame = -3 Query: 602 IKHSTGQGHPVKLVPYNPAYQDESVLWTESRDVGKGFRCVRMV------NNIYLNFDA 447 I T +GH + V + AYQ V+ +DVGK F V V NN+ + F A Sbjct: 360 ISRGTSRGHIARAVLESIAYQVRDVIEVIKKDVGKEFVNVLKVDGGVSKNNLLMQFQA 417
>CO4A6_HUMAN (Q14031) Collagen alpha-6(IV) chain precursor| Length = 1691 Score = 30.0 bits (66), Expect = 6.4 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = -2 Query: 588 RPGPPREAGAVQPGVPGRVGAVDGEP 511 RPGPP GA PG+PG + V G+P Sbjct: 994 RPGPPGLPGA--PGLPGIIKGVSGKP 1017
>COL34_CAEEL (P34687) Cuticle collagen 34 (Abnormal ray morphology protein 4)| Length = 299 Score = 29.6 bits (65), Expect = 8.3 Identities = 20/38 (52%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = -2 Query: 585 PGPPREAGAV-QPGVPGRVGAVDGEPRRGQGLPLRAHG 475 PGPP EAG PG PG+ GA DG P GQ P +G Sbjct: 218 PGPPGEAGPQGPPGSPGQPGA-DGSP--GQPGPKGPNG 252
>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region| Length = 153 Score = 26.6 bits (57), Expect(2) = 9.3 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 1/39 (2%) Frame = +1 Query: 52 QSSDLRIMVP-PHSLQHPLLPRSNADSIARQHTQTPLPH 165 Q SD+ I P PH HP P HT TP PH Sbjct: 13 QYSDIYIHTPHPHPHPHPHTPTHT-----HPHTPTPTPH 46 Score = 21.6 bits (44), Expect(2) = 9.3 Identities = 7/10 (70%), Positives = 7/10 (70%) Frame = +2 Query: 152 HHCHTSHTVL 181 HH HT HT L Sbjct: 63 HHTHTPHTTL 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,863,616 Number of Sequences: 219361 Number of extensions: 1492590 Number of successful extensions: 6398 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5521 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6380 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
