>OAF_DROME (Q9NLA6) Out at first protein [Contains: Out at first short|
           protein]
          Length = 487

 Score = 33.5 bits (75), Expect = 0.59
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -1

Query: 663 WLFTLH--PKAHILIHQDHKVAVSEAQSQSHSQV--PLNHQRKEASMHAPFTWCNPPGSK 496
           W F +H   ++H      HK +  + Q Q HSQV    +HQ   ++   P T  +PP S 
Sbjct: 415 WSFPVHHISQSHHQSQSQHKPSRQQKQHQHHSQVAPTSHHQSSSSTPPTPSTSSSPPSSS 474

Query: 495 GS 490
            S
Sbjct: 475 SS 476

>NIP29_YEAST (P33419) Protein NIP29|
          Length = 253

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = -2

Query: 458 KALSHLHKQSF--NLSFLKNRR*PRKQQRVSSPVDCTNDPGFRADRKLDERIIGPWFQQN 285
           +AL  L +++F  N S L N++  R Q+R+SSP+   +  G   DRK+   +     +Q 
Sbjct: 28  EALKKLREENFSSNTSELGNKKHYRAQERMSSPLHRLSPTGKSDDRKVKSPLDDKLRRQL 87

Query: 284 FPRY*RTSDPKETRFAMLAARATDLHKLRR 195
                R   P  + + M     ++L ++RR
Sbjct: 88  REGNTRLPPPPFSSYGMPPTNRSNLDRIRR 117

>RISB_BDEBA (P61720) 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) (DMRL|
           synthase) (Lumazine synthase) (Riboflavin synthase beta
           chain)
          Length = 179

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 409 RIGGDHGSSNESQAQWTVQMIQASEQI 329
           R GGDHG+  E  AQ T++MI  +++I
Sbjct: 115 RAGGDHGNKGEEAAQVTMEMIGLTQEI 141

>CAAL_ECOLI (P77213) Carboxylate-amine ligase ybdK (EC 6.3.-.-)|
          Length = 372

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 118 HMRICSRNSRPMATRQRRTICENQYYLRSL 207
           H+ IC   + P    QR+ +C+N+ Y R+L
Sbjct: 91  HLEICGGGTHPFQKWQRQEVCDNERYQRTL 120

>CAAL_ECOL6 (Q8FK30) Carboxylate-amine ligase ybdK (EC 6.3.-.-)|
          Length = 372

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 118 HMRICSRNSRPMATRQRRTICENQYYLRSL 207
           H+ IC   + P    QR+ +C+N+ Y R+L
Sbjct: 91  HLEICGGGTHPFQKWQRQEVCDNERYQRTL 120

>CAAL_ECO57 (Q8XBX1) Carboxylate-amine ligase ybdK (EC 6.3.-.-)|
          Length = 372

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 118 HMRICSRNSRPMATRQRRTICENQYYLRSL 207
           H+ IC   + P    QR+ +C+N+ Y R+L
Sbjct: 91  HLEICGGGTHPFQKWQRQEVCDNERYQRTL 120

>CAAL_SHIFL (Q83M14) Carboxylate-amine ligase ybdK (EC 6.3.-.-)|
          Length = 372

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 118 HMRICSRNSRPMATRQRRTICENQYYLRSL 207
           H+ IC   + P    QR+ +C+N+ Y R+L
Sbjct: 91  HLEICGGGTPPFQKWQRQEVCDNERYQRTL 120

>CAAL_SALTY (Q8ZR41) Carboxylate-amine ligase ybdK (EC 6.3.-.-)|
          Length = 372

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 118 HMRICSRNSRPMATRQRRTICENQYYLRSL 207
           H+ IC   + P    QR+ +C+N+ Y R+L
Sbjct: 91  HLGICGGGTHPFQKWQRQEVCDNERYQRTL 120

>CAAL_SALTI (Q8Z8M0) Carboxylate-amine ligase ybdK (EC 6.3.-.-)|
          Length = 372

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 118 HMRICSRNSRPMATRQRRTICENQYYLRSL 207
           H+ IC   + P    QR+ +C+N+ Y R+L
Sbjct: 91  HLGICGGGTHPFQKWQRQEVCDNERYQRTL 120

>CAAL_SALPA (Q5PMF1) Carboxylate-amine ligase ybdK (EC 6.3.-.-)|
          Length = 372

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 118 HMRICSRNSRPMATRQRRTICENQYYLRSL 207
           H+ IC   + P    QR+ +C+N+ Y R+L
Sbjct: 91  HLGICGGGTHPFQKWQRQEVCDNERYQRTL 120


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,547,730
Number of Sequences: 219361
Number of extensions: 1668253
Number of successful extensions: 3439
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3438
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)