ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COBS_THETN (Q8RCN8) Cobalamin synthase (EC 2.-.-.-) 28 4.7
2KI59C_DROME (Q9W1U4) Kinesin-like protein Klp59C (Kinesin-like p... 28 8.1

>COBS_THETN (Q8RCN8) Cobalamin synthase (EC 2.-.-.-)|
          Length = 248

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -1

Query: 218 LPAKEDRLGMMSAHAPFQGLLIGLILNLAFCXAKAVTS 105
           +  KED++  ++++ P  GLLIG IL +A+   K + S
Sbjct: 23  IDVKEDKIYKIASYFPVVGLLIGGILYIAYLLLKDLFS 60



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>KI59C_DROME (Q9W1U4) Kinesin-like protein Klp59C (Kinesin-like protein at|
           cytological position 59C)
          Length = 626

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 197 LGMMSAHAPFQGLLIGLILNLAFCXAKAVTSLLLFGVTP 81
           LG  S+H PF+G  +  +L  +F   K V + ++  ++P
Sbjct: 462 LGRQSSHLPFRGSKLTQVLRDSFIGGKKVKTCMIAMISP 500


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,175,115
Number of Sequences: 219361
Number of extensions: 437759
Number of successful extensions: 1147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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