ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NQRD_NEIMB (Q9K0M6) Na(+)-translocating NADH-quinone reductase s... 31 2.8
2NQRD_NEIMA (Q9JVQ1) Na(+)-translocating NADH-quinone reductase s... 31 2.8
3CASR_HUMAN (P41180) Extracellular calcium-sensing receptor precu... 30 6.3

>NQRD_NEIMB (Q9K0M6) Na(+)-translocating NADH-quinone reductase subunit D (EC|
           1.6.5.-) (Na(+)-translocating NQR subunit D) (Na(+)-NQR
           subunit D) (NQR complex subunit D) (NQR-1 subunit D)
          Length = 208

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -1

Query: 164 LGLVLQICNLLGHLYQGFVY----QLTIFLGLVCTRVILMG 54
           + ++  +  L+  L Q F Y    QL++F+GL+ T  I+MG
Sbjct: 76  MAIIASLVTLVDQLLQAFAYELSKQLSVFVGLIITNCIVMG 116



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>NQRD_NEIMA (Q9JVQ1) Na(+)-translocating NADH-quinone reductase subunit D (EC|
           1.6.5.-) (Na(+)-translocating NQR subunit D) (Na(+)-NQR
           subunit D) (NQR complex subunit D) (NQR-1 subunit D)
          Length = 208

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -1

Query: 164 LGLVLQICNLLGHLYQGFVY----QLTIFLGLVCTRVILMG 54
           + ++  +  L+  L Q F Y    QL++F+GL+ T  I+MG
Sbjct: 76  MAIIASLVTLVDQLLQAFAYELSKQLSVFVGLIITNCIVMG 116



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>CASR_HUMAN (P41180) Extracellular calcium-sensing receptor precursor (CaSR)|
           (Parathyroid Cell calcium-sensing receptor)
          Length = 1078

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -1

Query: 221 PNCFRHQ*VETFLMYSTCHLGLVLQICNLLGHLYQGFVYQLTIFLGLVCTRVILMGIKIP 42
           P+ +R+Q +E  +++ TCH G ++ +         GF+   T  L  +C        K+P
Sbjct: 748 PSSYRNQELEDEIIFITCHEGSLMAL---------GFLIGYTCLLAAICFFFAFKSRKLP 798

Query: 41  E 39
           E
Sbjct: 799 E 799


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,536,254
Number of Sequences: 219361
Number of extensions: 2337988
Number of successful extensions: 4920
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4919
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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