ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC166090.23| Glycine max clone gmw1-103e11, complete sequence 42 2.3
2gb|AC123945.4| Mus musculus BAC clone RP24-87G13 from chromosome... 42 2.3
3emb|AL022397.1|HS11C7 Human DNA sequence from clone CTA-11C7 on ... 42 2.3
4ref|XM_632583.1| Dictyostelium discoideum hypothetical protein (... 40 9.0
5gb|AC145205.2| Homo sapiens chromosome 17, clone RP11-1224M18, c... 40 9.0
6emb|CT010522.7| Mouse DNA sequence from clone RP23-310H3 on chro... 40 9.0
7gb|AF005683.1| Shewanella putrefaciens DNA gyrase beta-subunit (... 40 9.0
8gb|AC121578.2| Mus musculus BAC clone RP23-253I14 from 5, comple... 40 9.0
9ref|XM_667004.1| Plasmodium berghei strain ANKA hypothetical pro... 40 9.0
10gb|AC111103.7| Mus musculus chromosome 16, clone RP23-187G7, com... 40 9.0
11ref|XM_674681.1| Plasmodium berghei strain ANKA hypothetical pro... 40 9.0
12gb|AC148562.3| Callicebus moloch clone LB5-363C5, complete sequence 40 9.0
13emb|BX927365.7| Zebrafish DNA sequence from clone DKEY-161P7 in ... 40 9.0
14emb|BX571661.1| Wolinella succinogenes, complete genome; segment... 40 9.0
15emb|AL645808.13| Mouse DNA sequence from clone RP23-427P14 on ch... 40 9.0
16gb|AC112219.2| Homo sapiens chromosome 3 clone RP11-433A10, comp... 40 9.0
17gb|AY129964.1| Mus musculus strain C3H GPI-gamma 4 gene, complet... 40 9.0
18gb|AC091155.5| Homo sapiens chromosome 17, clone CTD1-2306D4, co... 40 9.0
19gb|AC108131.2| Homo sapiens chromosome 16 clone RP11-337N9, comp... 40 9.0
20gb|AC022905.7| Homo sapiens chromosome 8, clone RP11-656G20, com... 40 9.0
21dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 40 9.0
22gb|AC144908.17| Mus musculus chromosome 5, clone RP23-102O19, co... 40 9.0
23dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
24dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
25gb|AC135776.3| Homo sapiens chromosome 16 clone CTD-2144E22, com... 40 9.0
26gb|AC011003.7|AC011003 Homo sapiens chromosome 8 clone RP11-86O1... 40 9.0
27gb|AC108868.4| Homo sapiens BAC clone RP11-448J14 from 2, comple... 40 9.0
28gb|AC116956.2| Dictyostelium discoideum chromosome 2 map 1418423... 40 9.0
29gb|AC055858.18| Homo sapiens chromosome 17, clone RP11-682M7, co... 40 9.0
30gb|AC009837.13| Homo sapiens chromosome 17, clone RP11-550K23, c... 40 9.0
31dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
32dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
33dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
34dbj|AP001306.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 9.0
35emb|BX784029.5| Zebrafish DNA sequence from clone DKEY-21H14 in ... 40 9.0
36gb|DP000019.1| Callicebus moloch target 1 genomic scaffold 40 9.0
37emb|AJ246275.1|UCO246275 unclassified coccolithophorid CCMP 300 ... 40 9.0
38emb|AJ246263.1|PCA246263 Pleurochrysis carterae 18S rRNA gene, s... 40 9.0
39emb|AJ005180.1|LEAJ5180 Lycopersicon esculentum genomic RAPD ban... 40 9.0
40gb|AC091860.3| Homo sapiens chromosome 5 clone CTD-2335O3, compl... 40 9.0 
>gb|AC166090.23| Glycine max clone gmw1-103e11, complete sequence
          Length = 89397

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 605   caacatatcacacacaacaat 625
             |||||||||||||||||||||
Sbjct: 70211 caacatatcacacacaacaat 70231
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>gb|AC123945.4| Mus musculus BAC clone RP24-87G13 from chromosome 14, complete sequence
          Length = 207945

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 612    tcacacacaacaataataaat 632
              |||||||||||||||||||||
Sbjct: 181229 tcacacacaacaataataaat 181249
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>emb|AL022397.1|HS11C7 Human DNA sequence from clone CTA-11C7 on chromosome 1q32.1-32.3
             Contains part of the SYT14 gene for synaptotagmin XIV,
             complete sequence
          Length = 109302

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 580   attaacaaaaccataatgtttcctt 604
             ||||||||||||| |||||||||||
Sbjct: 27937 attaacaaaaccaaaatgtttcctt 27961
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>ref|XM_632583.1| Dictyostelium discoideum hypothetical protein (DDB0218841), partial
             mRNA
          Length = 13779

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 515   gaattaatttttcaccatgt 534
             ||||||||||||||||||||
Sbjct: 11266 gaattaatttttcaccatgt 11247
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>gb|AC145205.2| Homo sapiens chromosome 17, clone RP11-1224M18, complete sequence
          Length = 81310

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 614   acacacaacaataataaatc 633
             ||||||||||||||||||||
Sbjct: 18089 acacacaacaataataaatc 18108
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>emb|CT010522.7| Mouse DNA sequence from clone RP23-310H3 on chromosome 16, complete
            sequence
          Length = 169798

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 350  gcaatctttcataccccaat 369
            ||||||||||||||||||||
Sbjct: 4846 gcaatctttcataccccaat 4827
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>gb|AF005683.1| Shewanella putrefaciens DNA gyrase beta-subunit (gyrB) gene, partial
            cds
          Length = 1257

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 64   atgacccttgtgcataccag 83
            ||||||||||||||||||||
Sbjct: 1175 atgacccttgtgcataccag 1194
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>gb|AC121578.2| Mus musculus BAC clone RP23-253I14 from 5, complete sequence
          Length = 125303

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 613   cacacacaacaataataaat 632
             ||||||||||||||||||||
Sbjct: 59175 cacacacaacaataataaat 59194
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>ref|XM_667004.1| Plasmodium berghei strain ANKA hypothetical protein (PB300518.00.0)
           partial mRNA
          Length = 303

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 626 aataaatccaagttcagaat 645
           ||||||||||||||||||||
Sbjct: 57  aataaatccaagttcagaat 76
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>gb|AC111103.7| Mus musculus chromosome 16, clone RP23-187G7, complete sequence
          Length = 222348

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 350    gcaatctttcataccccaat 369
              ||||||||||||||||||||
Sbjct: 111964 gcaatctttcataccccaat 111983
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>ref|XM_674681.1| Plasmodium berghei strain ANKA hypothetical protein (PB001039.00.0)
            partial mRNA
          Length = 1893

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 626  aataaatccaagttcagaat 645
            ||||||||||||||||||||
Sbjct: 1647 aataaatccaagttcagaat 1666
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>gb|AC148562.3| Callicebus moloch clone LB5-363C5, complete sequence
          Length = 217859

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    caagatggcatgtggagtac 180
              ||||||||||||||||||||
Sbjct: 108942 caagatggcatgtggagtac 108923
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>emb|BX927365.7| Zebrafish DNA sequence from clone DKEY-161P7 in linkage group 23,
              complete sequence
          Length = 229608

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    tacaaatttgaagtacaaga 159
              ||||||||||||||||||||
Sbjct: 165307 tacaaatttgaagtacaaga 165326
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>emb|BX571661.1| Wolinella succinogenes, complete genome; segment 5/7
          Length = 346613

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    catgtggagtacatcaaaaa 188
              ||||||||||||||||||||
Sbjct: 237086 catgtggagtacatcaaaaa 237105
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>emb|AL645808.13| Mouse DNA sequence from clone RP23-427P14 on chromosome 13 Contains the
             gene for a novel protein similar to myosin, light
             polypeptide kinase 2 Mylk2, a novel gene, the Wrnip gene
             for Werner syndrome homolog (human) interacting protein,
             the Serpinb1a gene for serine (or cysteine) proteinase
             inhibitor clade B (ovalbumin) member 1a, a Serpinb1
             pseudogene and a CpG island, complete sequence
          Length = 190673

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 462   gcatgtgtggcagaagggag 481
             ||||||||||||||||||||
Sbjct: 76758 gcatgtgtggcagaagggag 76739
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>gb|AC112219.2| Homo sapiens chromosome 3 clone RP11-433A10, complete sequence
          Length = 155472

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    acacaaatccttgatacaaa 126
              ||||||||||||||||||||
Sbjct: 139909 acacaaatccttgatacaaa 139890
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>gb|AY129964.1| Mus musculus strain C3H GPI-gamma 4 gene, complete cds
          Length = 65351

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 613   cacacacaacaataataaat 632
             ||||||||||||||||||||
Sbjct: 21648 cacacacaacaataataaat 21667
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>gb|AC091155.5| Homo sapiens chromosome 17, clone CTD1-2306D4, complete sequence
          Length = 144430

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    caagatggcatgtggagtac 180
              ||||||||||||||||||||
Sbjct: 135005 caagatggcatgtggagtac 134986
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>gb|AC108131.2| Homo sapiens chromosome 16 clone RP11-337N9, complete sequence
          Length = 151941

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 521   atttttcaccatgtactcat 540
             ||||||||||||||||||||
Sbjct: 86374 atttttcaccatgtactcat 86393
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>gb|AC022905.7| Homo sapiens chromosome 8, clone RP11-656G20, complete sequence
          Length = 184311

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 531    atgtactcatgtgcatgatcatat 554
              |||||||||||||||||| |||||
Sbjct: 170436 atgtactcatgtgcatgagcatat 170459
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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete
               genome
          Length = 2516575

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 146     tttgaagtacaagaccaaga 165
               ||||||||||||||||||||
Sbjct: 1481590 tttgaagtacaagaccaaga 1481609
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>gb|AC144908.17| Mus musculus chromosome 5, clone RP23-102O19, complete sequence
          Length = 212299

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 611   atcacacacaacaataataa 630
             ||||||||||||||||||||
Sbjct: 89503 atcacacacaacaataataa 89484
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 577     tatattaacaaaaccataat 596
               ||||||||||||||||||||
Sbjct: 7763204 tatattaacaaaaccataat 7763185
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 505      atatgcaacagaattaattt 524
                ||||||||||||||||||||
Sbjct: 34647379 atatgcaacagaattaattt 34647398
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>gb|AC135776.3| Homo sapiens chromosome 16 clone CTD-2144E22, complete sequence
          Length = 168546

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 521  atttttcaccatgtactcat 540
            ||||||||||||||||||||
Sbjct: 4510 atttttcaccatgtactcat 4529
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>gb|AC011003.7|AC011003 Homo sapiens chromosome 8 clone RP11-86O15, complete sequence
          Length = 189042

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 531   atgtactcatgtgcatgatcatat 554
             |||||||||||||||||| |||||
Sbjct: 66227 atgtactcatgtgcatgagcatat 66250
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>gb|AC108868.4| Homo sapiens BAC clone RP11-448J14 from 2, complete sequence
          Length = 109290

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    aaattacaaatttgaagtac 155
              ||||||||||||||||||||
Sbjct: 106440 aaattacaaatttgaagtac 106421
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>gb|AC116956.2| Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4,
              complete sequence
          Length = 266544

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 515    gaattaatttttcaccatgt 534
              ||||||||||||||||||||
Sbjct: 134471 gaattaatttttcaccatgt 134452
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>gb|AC055858.18| Homo sapiens chromosome 17, clone RP11-682M7, complete sequence
          Length = 167395

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 614   acacacaacaataataaatc 633
             ||||||||||||||||||||
Sbjct: 41489 acacacaacaataataaatc 41470
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>gb|AC009837.13| Homo sapiens chromosome 17, clone RP11-550K23, complete sequence
          Length = 168509

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   caagatggcatgtggagtac 180
             ||||||||||||||||||||
Sbjct: 71205 caagatggcatgtggagtac 71224
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>dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1116_E04
          Length = 94096

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 505  atatgcaacagaattaattt 524
            ||||||||||||||||||||
Sbjct: 4330 atatgcaacagaattaattt 4349
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>dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0091G06
          Length = 161851

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 577   tatattaacaaaaccataat 596
             ||||||||||||||||||||
Sbjct: 75702 tatattaacaaaaccataat 75683
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>dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1112_G06
          Length = 122580

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 505    atatgcaacagaattaattt 524
              ||||||||||||||||||||
Sbjct: 113994 atatgcaacagaattaattt 114013
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>dbj|AP001306.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MKA23
          Length = 70100

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 412   aaggtcatgtcttttcgaga 431
             ||||||||||||||||||||
Sbjct: 44083 aaggtcatgtcttttcgaga 44102
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>emb|BX784029.5| Zebrafish DNA sequence from clone DKEY-21H14 in linkage group 4, complete
              sequence
          Length = 219903

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 587    aaaccataatgtttccttca 606
              ||||||||||||||||||||
Sbjct: 177962 aaaccataatgtttccttca 177981
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>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold
          Length = 2105003

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    caagatggcatgtggagtac 180
              ||||||||||||||||||||
Sbjct: 308282 caagatggcatgtggagtac 308263
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>emb|AJ246275.1|UCO246275 unclassified coccolithophorid CCMP 300 18S rRNA gene
          Length = 1802

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 aagtacaagaccaagatggc 169
           ||||||||||||||||||||
Sbjct: 510 aagtacaagaccaagatggc 491
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>emb|AJ246263.1|PCA246263 Pleurochrysis carterae 18S rRNA gene, strain von Stosch
          Length = 1808

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 aagtacaagaccaagatggc 169
           ||||||||||||||||||||
Sbjct: 511 aagtacaagaccaagatggc 492
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>emb|AJ005180.1|LEAJ5180 Lycopersicon esculentum genomic RAPD band 26
          Length = 2134

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 135 caaattacaaatttgaagtacaag 158
           |||||||||||| |||||||||||
Sbjct: 429 caaattacaaatatgaagtacaag 406
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>gb|AC091860.3| Homo sapiens chromosome 5 clone CTD-2335O3, complete sequence
          Length = 100348

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 625   taataaatccaagttcagaa 644
             ||||||||||||||||||||
Sbjct: 10684 taataaatccaagttcagaa 10703


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,984,235
Number of Sequences: 3902068
Number of extensions: 6984235
Number of successful extensions: 131745
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131529
Number of HSP's gapped (non-prelim): 216
length of query: 656
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 633
effective length of database: 17,143,297,704
effective search space: 10851707446632
effective search space used: 10851707446632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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