ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4f17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1JI60_HORVU (Q00531) 60 kDa jasmonate-induced protein (EC 3.2.2.2... 236 5e-62
2YVBV_BACSU (O32256) Hypothetical transport protein yvbV 31 2.4
3WSC4_YEAST (P38739) Cell wall integrity and stress response comp... 31 2.4
4HLYA_PROMI (P16466) Hemolysin precursor 31 3.1
5YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 ... 31 3.1
6Y746_METJA (Q58156) Hypothetical protein MJ0746 31 3.1
7SDC_DROME (P49415) Syndecan precursor 31 3.1
8TYPA_SYNY3 (P72749) GTP-binding protein TypA/BipA homolog 30 4.1
9UUP_BUCAI (P57445) ABC transporter ATP-binding protein uup 30 4.1
10AROA_LACLA (Q9CEU0) 3-phosphoshikimate 1-carboxyvinyltransferase... 30 5.3
11AROA_LACLC (P43905) 3-phosphoshikimate 1-carboxyvinyltransferase... 30 6.9
12WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7... 29 9.1

>JI60_HORVU (Q00531) 60 kDa jasmonate-induced protein (EC 3.2.2.22) (rRNA|
           N-glycosidase)
          Length = 560

 Score =  236 bits (601), Expect = 5e-62
 Identities = 123/143 (86%), Positives = 126/143 (88%)
 Frame = -1

Query: 600 ETVHTCYGPAEVIYAVLSNGVQGRVDVKLARLQSRDEEDLVGRIVARSKLFDVGCVLFYK 421
           ETV T  GPAEVIYAVLSNGVQGRVDVKLA LQSRDE  LVGRIVARSKLFD GCVLFY 
Sbjct: 420 ETVLTRCGPAEVIYAVLSNGVQGRVDVKLAGLQSRDEVVLVGRIVARSKLFDFGCVLFYN 479

Query: 420 EAADKGVHVRPGELVPLARHALAVPLHIPLTIELDLHRGGSGDEIVRGQLEFKTATDGLH 241
           EAA  GV VRPGELVPLARHALAVPLH+PLTIELD+  GGSGDEIVRG+LEFKTA DGLH
Sbjct: 480 EAA--GVRVRPGELVPLARHALAVPLHMPLTIELDIRHGGSGDEIVRGELEFKTAIDGLH 537

Query: 240 VERLVGVNGAEFEVTILWSEYPW 172
             RLVGVN AEFEVTILWSEYPW
Sbjct: 538 TGRLVGVNDAEFEVTILWSEYPW 560



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>YVBV_BACSU (O32256) Hypothetical transport protein yvbV|
          Length = 305

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = -2

Query: 239 WNVLLVSMVLNSR*QSYGRNTLGRHLCEPSGVLSAIVYIQILLYG 105
           W + LVS +LN     YG  T+G +   P+G+ SAIV+ Q +L G
Sbjct: 68  WPIYLVSALLNIT-LFYGLQTIGLNYL-PAGLFSAIVFFQPVLMG 110



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>WSC4_YEAST (P38739) Cell wall integrity and stress response component 4|
           precursor
          Length = 605

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 1/112 (0%)
 Frame = +2

Query: 197 VTSNSAPLTPTRRSTCRPSVAVLNSSWPLTIXXXXXXXXXXXXIVSGMCNGTASACLANG 376
           +TS     T T+ ST  P+    ++S   +               S   + T+S  ++  
Sbjct: 175 ITSALPTTTSTKLSTSIPTSTTSSTSTTTSTSSSTSTTVSVTSSTSTTTSTTSSTLISTS 234

Query: 377 TSSPGRTCTPLSAASL*KSTQPTSN-SLLRATILPTXXXXXXXXXXXXFTST 529
           TSS   + TP + +S   ST  TS+ S   +T  PT             TST
Sbjct: 235 TSS-SSSSTPTTTSSAPISTSTTSSTSTSTSTTSPTSSSAPTSSSNTTPTST 285



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>HLYA_PROMI (P16466) Hemolysin precursor|
          Length = 1577

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 5/123 (4%)
 Frame = +1

Query: 211 STIDTNKTFHMQAVGGSFELKLASNNFISGSTTMKVKLNRQRYVQWHGECMPRQRNQLPR 390
           S ID      + A  G   L  A    I+    + +  N+  ++    E   R  N   R
Sbjct: 392 SQIDAKNNATLTATKGDVTLDAAK---INAGNNLAINANKDIHINGLVEKESRSENGNKR 448

Query: 391 SHVHSLVSGLLVEEHATDVEQLAASNDPANKILFVSG-----LQARKLHIDPALDAIAQD 555
           +H   L SG     H T  E L AS   A K L +        Q  KLH +  +   A+D
Sbjct: 449 NHTSRLESGSWSNSHQT--ETLKASELTAGKDLGLDAQGSITAQGAKLHANENVLVNAKD 506

Query: 556 SVD 564
           +++
Sbjct: 507 NIN 509



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>YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 intergenic|
           region
          Length = 1140

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 23/132 (17%), Positives = 56/132 (42%), Gaps = 2/132 (1%)
 Frame = +2

Query: 191 KIVTSNSAPLTPTRRSTCRPSVAVLNSSWPLTIXXXXXXXXXXXXIVSGMCNGTASACLA 370
           ++ +S+++ ++    ST  P+ + ++ + P +                   + + S+  +
Sbjct: 218 EVFSSSTSDVSSLLSSTSSPASSTISETLPFSSTILSITSSPVSSEAPSATSSSVSSEAS 277

Query: 371 NGTSSPGRTCTPLSAASL*KSTQPTSNSLLRATILPTXXXXXXXXXXXXFTST--RPWTP 544
           + TSS   +  PL+ +S+  S  P+S S + ++  P+             TS+      P
Sbjct: 278 SSTSSSVSSEAPLATSSVVSSEAPSSTSSVVSSEAPSSTSSSVSSEISSTTSSSVSSEAP 337

Query: 545 LLRTA*ITSAGP 580
           L  ++ ++S  P
Sbjct: 338 LATSSVVSSEAP 349



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>Y746_METJA (Q58156) Hypothetical protein MJ0746|
          Length = 141

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 409 VSGLLVEEHATDVEQLAASNDPANKILFVSGLQARKLHIDPALDAIAQDSVDHLRWA 579
           ++GL+ E    ++E +      ANK    +  +A++L IDPA D   + S D  R A
Sbjct: 73  MNGLISENLKENIEMMLKGECMANKEKKAAATKAKELGIDPAHDFFDESSRDEARHA 129



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>SDC_DROME (P49415) Syndecan precursor|
          Length = 399

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -1

Query: 426 YKEAADKGVHV---RPGELVPLARHALAVPLHIPLTIELDLHRGGSGD 292
           Y +  DK + +    PG L P+  H      HIP T E+D+  G   D
Sbjct: 217 YNKELDKEIDIDGPEPGHLPPVVHHNTVETGHIPTTDEIDVDGGDEDD 264



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>TYPA_SYNY3 (P72749) GTP-binding protein TypA/BipA homolog|
          Length = 597

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
 Frame = -1

Query: 450 FDVGCVLFY--KEAADKGVH-------VRPGELVPLARHALAVPLHIPLTIELDLHRGGS 298
           F+ G   FY  K A D+GV        V  G ++        + L++  T +L  HR  +
Sbjct: 490 FEEGVATFYAMKNAEDRGVFFITPGTKVYKGMIIGEHNRPQDIELNVCKTKQLTNHRSAT 549

Query: 297 GDEIVRGQLEFKTATDGLHVERLVGVNGAEFEVTI 193
           GDE+V+ Q     A + +++ER +   G +  V I
Sbjct: 550 GDELVQLQ-----APEDMNLERALEYIGPDELVEI 579



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>UUP_BUCAI (P57445) ABC transporter ATP-binding protein uup|
          Length = 596

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 199 HLEFSTIDTNKTFHMQAVGGSFELKLASNNFISGSTTMKVKLNRQRYVQWHGE 357
           HL+  TI   +TF ++   GS        NFI   +T  + L+R + V W G+
Sbjct: 155 HLDMKTIKWLETF-LKKFSGSILFVSHDRNFIQNVSTRIIDLDRGKLVSWPGD 206



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>AROA_LACLA (Q9CEU0) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)|
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase) (EPSPS)
          Length = 430

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 15/49 (30%), Positives = 30/49 (61%)
 Frame = +1

Query: 241 MQAVGGSFELKLASNNFISGSTTMKVKLNRQRYVQWHGECMPRQRNQLP 387
           +QA+GG  E+    N  ++ + T+KVK ++ +  +  G+ +PR  ++LP
Sbjct: 269 IQAMGGQLEILEQDN--VAKAATLKVKASQLKGTEISGDLIPRLIDELP 315



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>AROA_LACLC (P43905) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)|
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase) (EPSPS)
          Length = 430

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 14/49 (28%), Positives = 32/49 (65%)
 Frame = +1

Query: 241 MQAVGGSFELKLASNNFISGSTTMKVKLNRQRYVQWHGECMPRQRNQLP 387
           +QA+GG  +L++   + ++ + T+KVK ++ +  +  G+ +PR  ++LP
Sbjct: 269 IQAMGG--QLEILEQDEVAKAATLKVKASQLKGTEISGDLIPRLIDELP 315



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>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein|
            kinase with no lysine 2) (Protein kinase,
            lysine-deficient 2)
          Length = 2297

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 465  QRSCQQDPLRLGTAGAQASHRPGLGRHCSGQRRSPP 572
            + S +  P  +GT G QASH   LG    G  R  P
Sbjct: 1735 ESSAEPPPSDMGTVGGQASHPQTLGARALGSPRKRP 1770


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,582,909
Number of Sequences: 219361
Number of extensions: 1697876
Number of successful extensions: 5093
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5090
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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