ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4f16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PTAFR_BOVIN (Q9TTY5) Platelet-activating factor receptor (PAF-R)... 30 4.4
2PTAFR_MOUSE (Q62035) Platelet-activating factor receptor (PAF-R) 29 9.8

>PTAFR_BOVIN (Q9TTY5) Platelet-activating factor receptor (PAF-R) (PAFr)|
          Length = 342

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +3

Query: 447 AVQQMPLTSEATDRNRGMYSTLLVWITIFMTESGAAYMPVPKRTQRMP 590
           AV +   T++AT R RG+  +L++W++I      A+Y  V   T R P
Sbjct: 118 AVTRPIKTAQATTRKRGILLSLIIWVSIV---GAASYFFVLDSTNREP 162



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>PTAFR_MOUSE (Q62035) Platelet-activating factor receptor (PAF-R)|
          Length = 341

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 468 TSEATDRNRGMYSTLLVWITIFMTES 545
           T++AT R RG+  +L++W++I  T S
Sbjct: 125 TAQATTRKRGISLSLIIWVSIVATAS 150


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,693,465
Number of Sequences: 219361
Number of extensions: 1346012
Number of successful extensions: 3564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3563
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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