>LEPA_BUCAP (Q8K9Q9) GTP-binding protein lepA|
          Length = 601

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -1

Query: 497 LVDGCFDLIERRSRFDVLSRIKMEGEHGALVFN---LIIFRDSVEATIHMNFLEVPG 336
           L+  C  L ER     VL  + +E E G  +     +I ++D      H+NF++ PG
Sbjct: 28  LIQKCGGLSEREMSDQVLDSMDLEKERGITIKAQSVMIDYKDKNGNVFHLNFIDTPG 84

>TRUB_CARHZ (Q3ABA1) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 288

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = -1

Query: 617 SASDYLRLLSPKRGISMKFDCLVEVDIRTKASPGDTDDKNLVDGCFDLIERRSRFDVLSR 438
           S   Y+R ++ + G  +K    ++  +RT++ P   DD NL+   F LI     F    +
Sbjct: 171 SRGTYIRSIANEIGNLLKTGATLKFLLRTRSGPFLLDDSNLLHEDFTLIPPEQLFQDFPK 230

Query: 437 IKMEGEHGALVFN 399
           I +  E    V N
Sbjct: 231 INLTREQYLRVKN 243


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,957,760
Number of Sequences: 219361
Number of extensions: 2411936
Number of successful extensions: 6200
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6200
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 7902193040
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)