ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal4e16 |
|---|---|
| Clone Library Name | barley_pub |
>MSH6_ARATH (O04716) DNA mismatch repair protein MSH6-1 (AtMsh6-1)| Length = 1324 Score = 35.0 bits (79), Expect = 0.17 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Frame = -1 Query: 472 GNDAIGKRIEIQLASDGKWHQGVVS--NVISGMLCVQLDNGSSENLELGNQAVRLIAQRL 299 G++ +GK++ + D KW+ G V+ + G V+ ++G E+L+LG + + Sbjct: 121 GDEVVGKQVRVYWPLDKKWYDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEKTEWVVGEK 180 Query: 298 KGGK 287 G + Sbjct: 181 SGDR 184
>LRRN1_RAT (Q32Q07) Leucine-rich repeats neuronal protein 1 precursor| (Neuronal leucine-rich repeat protein 1) (NLRR-1) Length = 716 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/45 (37%), Positives = 28/45 (62%) Frame = +3 Query: 459 IASLPNLRSIQVASIASSPVLCPCLLDGVLPSEPSILSVEGLFLF 593 + SLPNLR I SI S+P+ C C++ + ++ +I +E L +F Sbjct: 357 VESLPNLREI---SIHSNPLRCDCVIHWINSNKTNIRFMEPLSMF 398
>LRRN1_MOUSE (Q61809) Leucine-rich repeats neuronal protein 1 precursor| (Neuronal leucine-rich repeat protein 1) (NLRR-1) Length = 716 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/45 (37%), Positives = 28/45 (62%) Frame = +3 Query: 459 IASLPNLRSIQVASIASSPVLCPCLLDGVLPSEPSILSVEGLFLF 593 + SLPNLR I SI S+P+ C C++ + ++ +I +E L +F Sbjct: 357 VESLPNLREI---SIHSNPLRCDCVIHWINSNKTNIRFMEPLSMF 398
>LRRN1_HUMAN (Q6UXK5) Leucine-rich repeats neuronal protein 1 precursor| (Neuronal leucine-rich repeat protein 1) (NLRR-1) Length = 716 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/45 (37%), Positives = 28/45 (62%) Frame = +3 Query: 459 IASLPNLRSIQVASIASSPVLCPCLLDGVLPSEPSILSVEGLFLF 593 + SLPNLR I SI S+P+ C C++ + ++ +I +E L +F Sbjct: 357 VESLPNLREI---SIHSNPLRCDCVIHWINSNKTNIRFMEPLSMF 398
>RK15_PEA (P31165) 50S ribosomal protein L15, chloroplast precursor (CL15)| (Fragment) Length = 258 Score = 30.4 bits (67), Expect = 4.1 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%) Frame = +3 Query: 450 LFPIASLPNLRSI---QVASIASSPVLCPCL 533 L P++SLP+L S V ++ + P LCPCL Sbjct: 6 LIPVSSLPSLASPFKGNVKTLVAKPCLCPCL 36
>ILVD2_BORPA (Q7W497) Dihydroxy-acid dehydratase 2 (EC 4.2.1.9) (DAD 2)| Length = 561 Score = 30.0 bits (66), Expect = 5.4 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = -1 Query: 544 TPSKRHGQSTGDEAMDATWILRKLGNDAIGKRIEIQLASDGKWHQGVVSNVISG 383 TP+ G S G E M + +LR++ D I+ A+ G+W GVV VI G Sbjct: 77 TPTISDGMSMGTEGMKYSLVLREVIADC------IETAAQGQWMDGVV--VIGG 122
>GLT4_WHEAT (P08489) Glutenin, high molecular weight subunit PW212 precursor| Length = 838 Score = 30.0 bits (66), Expect = 5.4 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = -2 Query: 537 PRGMGRAQAMKQWMRPGYCASWAMMQLGRGLRSN*LLMGNGIKGWYPMS 391 P+ G+ Q QW +PG Q G L S L +G G +G+YP S Sbjct: 650 PQESGQGQQPGQWQQPGQWQQPGQGQPGYYLTSP-LQLGQGQQGYYPTS 697
>LRRN3_RAT (Q9ESY6) Leucine-rich repeats neuronal protein 3 precursor| (Neuronal leucine-rich repeat protein 3) (NLRR-3) Length = 707 Score = 29.6 bits (65), Expect = 7.0 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = +3 Query: 432 ANWISILF--PIASLPNLRSIQVASIASSPVLCPCLLDGVLPSEPSILSVEGLFLF 593 +N +S L+ I SLPNL+ I SI S+P+ C C++ + ++ +I +E LF Sbjct: 343 SNALSALYHGTIESLPNLKEI---SIHSNPIRCDCVIRWINMNKTNIRFMEPDSLF 395
>LRRN3_PONPY (Q5R482) Leucine-rich repeats neuronal protein 3 precursor| (Neuronal leucine-rich repeat protein 3) (NLRR-3) Length = 708 Score = 29.6 bits (65), Expect = 7.0 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = +3 Query: 432 ANWISILF--PIASLPNLRSIQVASIASSPVLCPCLLDGVLPSEPSILSVEGLFLF 593 +N +S L+ I SLPNL+ I SI S+P+ C C++ + ++ +I +E LF Sbjct: 343 SNALSALYHGTIESLPNLKEI---SIHSNPIRCDCVIRWINMNKTNIRFMEPDSLF 395
>TR150_HUMAN (Q9Y2W1) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 955 Score = 29.3 bits (64), Expect = 9.2 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 595 SKRKRPSTDKMDGSEGSTPSKRHGQSTGDEAMDATW 488 S +++ + +K S+ S PS+ G + GDEA + T+ Sbjct: 171 SSKRKSAKEKKSSSKDSRPSQAAGDNQGDEAKEQTF 206
>TR150_XENLA (Q5BJ39) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 951 Score = 29.3 bits (64), Expect = 9.2 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 595 SKRKRPSTDKMDGSEGSTPSKRHGQSTGDEAMDATW 488 S +++ + +K S+ S PS+ G + GDEA + T+ Sbjct: 171 SSKRKSTKEKKSSSKDSRPSQAAGDNQGDEAKEQTF 206
>TR150_RAT (Q5M7V8) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 951 Score = 29.3 bits (64), Expect = 9.2 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 595 SKRKRPSTDKMDGSEGSTPSKRHGQSTGDEAMDATW 488 S +++ + +K S+ S PS+ G + GDEA + T+ Sbjct: 171 SSKRKSTKEKKSSSKDSRPSQAAGDNQGDEAKEQTF 206
>TR150_MOUSE (Q569Z6) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 951 Score = 29.3 bits (64), Expect = 9.2 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 595 SKRKRPSTDKMDGSEGSTPSKRHGQSTGDEAMDATW 488 S +++ + +K S+ S PS+ G + GDEA + T+ Sbjct: 171 SSKRKSTKEKKSSSKDSRPSQAAGDNQGDEAKEQTF 206
>GLT3_WHEAT (P08488) Glutenin, high molecular weight subunit 12 precursor| Length = 660 Score = 29.3 bits (64), Expect = 9.2 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Frame = -2 Query: 537 PRGMGRAQAMKQWMRPGYCASW----AMMQLGRGLRSN*LLMGNGIKGWYPMS 391 P+ G+ Q +W PG W ++ Q G+G + +G G +G+YP S Sbjct: 146 PQQPGQGQQPGKWQEPGQGQQWYYPTSLQQPGQGQQ-----IGKGKQGYYPTS 193
>HXT2_YEAST (P23585) High-affinity glucose transporter HXT2| Length = 541 Score = 29.3 bits (64), Expect = 9.2 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -1 Query: 448 IEIQLASDGKWHQGVVSNVISGM 380 I IQ+AS KW+Q + +ISGM Sbjct: 148 IVIQIASSDKWYQYFIGRIISGM 170
>LRRN3_MOUSE (Q8CBC6) Leucine-rich repeats neuronal protein 3 precursor| (Neuronal leucine-rich repeat protein 3) (NLRR-3) Length = 707 Score = 29.3 bits (64), Expect = 9.2 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Frame = +3 Query: 435 NWISILF--PIASLPNLRSIQVASIASSPVLCPCLLDGVLPSEPSILSVEGLFLF 593 N +S L+ I SLPNL+ I SI S+P+ C C++ + ++ +I +E LF Sbjct: 344 NALSALYHGTIESLPNLKEI---SIHSNPIRCDCVIRWINMNKTNIRFMEPDSLF 395
>GLT0_WHEAT (P10387) Glutenin, high molecular weight subunit DY10 precursor| Length = 648 Score = 29.3 bits (64), Expect = 9.2 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Frame = -2 Query: 537 PRGMGRAQAMKQWMRPGYCASW----AMMQLGRGLRSN*LLMGNGIKGWYPMS 391 P+ G+ Q +W PG W ++ Q G+G + +G G +G+YP S Sbjct: 146 PQQPGQGQQPGKWQEPGQGQQWYYPTSLQQPGQGQQ-----IGKGQQGYYPTS 193 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,252,483 Number of Sequences: 219361 Number of extensions: 1864859 Number of successful extensions: 5798 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5630 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5792 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
