ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3p07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VGLX_EHV1B (P28968) Glycoprotein X precursor 30 2.1
2VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor 30 2.1

>VGLX_EHV1B (P28968) Glycoprotein X precursor|
          Length = 797

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
 Frame = +3

Query: 6   DNGAITEHTSTYIHTTPRAE-----HRRRASKITTPXXXXXXXXPLPDSIRXS-DARYSR 167
           DNG  T+HT+   HTT  A+     HR RA              P PD +  S D  Y  
Sbjct: 474 DNGVSTQHTTINDHTTANAQKHAGHHRGRAGGRRGSPQGGSHTTPHPDRLTPSPDDTYDD 533

Query: 168 XLSH 179
             +H
Sbjct: 534 DTNH 537



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>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor|
          Length = 866

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
 Frame = +3

Query: 6   DNGAITEHTSTYIHTTPRAE-----HRRRASKITTPXXXXXXXXPLPDSIRXS-DARYSR 167
           DNG  T+HT+   HTT  A+     HR RA              P PD +  S D  Y  
Sbjct: 543 DNGVSTQHTTINDHTTANAQKHAGHHRGRAGGRRGSPQGGSHTTPHPDRLTPSPDDTYDD 602

Query: 168 XLSH 179
             +H
Sbjct: 603 DTNH 606


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,997,971
Number of Sequences: 219361
Number of extensions: 279387
Number of successful extensions: 842
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 80,573,946
effective HSP length: 71
effective length of database: 64,999,315
effective search space used: 1559983560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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