ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3p03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 238 4e-60
2gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 238 4e-60
3gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 210 8e-52
4gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 135 4e-29
5gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 135 4e-29
6gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 123 1e-25
7gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 123 1e-25
8gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 111 5e-22
9gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 111 5e-22
10gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 111 5e-22
11dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 111 5e-22
12dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 111 5e-22
13dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 5e-22
14dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 5e-22
15dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 5e-22
16dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 5e-22
17gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 111 5e-22
18dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 111 5e-22
19dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 111 5e-22
20gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 100 2e-18
21gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 96 3e-17
22dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 3e-17
23gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 58 7e-06
24gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 58 7e-06
25gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 58 7e-06
26gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 58 7e-06
27dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 56 3e-05
28dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 56 3e-05
29gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 1.7
30gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 1.7
31gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 1.7
32gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 1.7
33emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 1.7
34gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 1.7
35gb|AC139060.5| Mus musculus chromosome 16, clone RP23-58G17, com... 38 6.6
36gb|AC112956.12| Mus musculus chromosome 9, clone RP23-412P4, com... 38 6.6
37emb|CR788228.11| Zebrafish DNA sequence from clone CH211-15N4 in... 38 6.6
38gb|AC136915.14| Mus musculus chromosome 16, clone RP23-65O24, co... 38 6.6
39gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete ... 38 6.6
40gb|AC160139.2| Mus musculus BAC clone RP23-93P8 from chromosome ... 38 6.6
41gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 38 6.6
42gb|AC097649.3| Homo sapiens BAC clone RP11-92D1 from 4, complete... 38 6.6
43dbj|AP005692.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.6
44dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic D... 38 6.6
45emb|BX323852.5| Mouse DNA sequence from clone RP23-167N11 on chr... 38 6.6
46gb|DQ304649.1| Homo sapiens anaphase promoting complex subunit 1... 38 6.6 
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  238 bits (120), Expect = 4e-60
 Identities = 132/135 (97%), Gaps = 1/135 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    catgcccagcaatcgcttgatatgcgatgcggacttaggtaggtaaancatcagatatta 60
            |||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||
Sbjct: 7712 catgcccagcaatcgcttgg-atgcgatgcggacttaggtaggtaaaacatcagatatta 7654

                                                                        
Query: 61   aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7653 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 7594

                           
Query: 121  gtagttcttggcatt 135
            |||||||||||||||
Sbjct: 7593 gtagttcttggcatt 7579
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  238 bits (120), Expect = 4e-60
 Identities = 132/135 (97%), Gaps = 1/135 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    catgcccagcaatcgcttgatatgcgatgcggacttaggtaggtaaancatcagatatta 60
            |||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||
Sbjct: 1352 catgcccagcaatcgcttgg-atgcgatgcggacttaggtaggtaaaacatcagatatta 1294

                                                                        
Query: 61   aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1293 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 1234

                           
Query: 121  gtagttcttggcatt 135
            |||||||||||||||
Sbjct: 1233 gtagttcttggcatt 1219
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>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  210 bits (106), Expect = 8e-52
 Identities = 132/137 (96%), Gaps = 3/137 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    catgcccagcaatcgcttgatatgcgatgcggacttag-gtaggtaaancatcagatatt 59
            |||||||||||||||||||  ||||||||||||||||| ||||||||| |||||||||||
Sbjct: 1661 catgcccagcaatcgcttgg-atgcgatgcggacttagtgtaggtaaaacatcagatatt 1603

                                                                        
Query: 60   aaaagtggcatgcttaaaaggtgtaaaggcagctgccg-tcgtcgctccttgccgttggg 118
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1602 aaaagtggcatgcttaaaaggtgtaaaggcagctgccgttcgtcgctccttgccgttggg 1543

                             
Query: 119  tcgtagttcttggcatt 135
            |||||||||||||||||
Sbjct: 1542 tcgtagttcttggcatt 1526
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  135 bits (68), Expect = 4e-29
 Identities = 124/139 (89%), Gaps = 8/139 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgcccagcaatcgcttgatatgcgatgcgg-acttaggta-----ggtaaancatcag 54
           |||||||||||||||||||  ||||||||||| |||||||||     | |||| ||||||
Sbjct: 732 catgcccagcaatcgcttgg-atgcgatgcggtacttaggtacaaaggataaaacatcag 674

                                                                       
Query: 55  atattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 114
           ||||||||  |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 673 atattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcctcgccgt 615

                              
Query: 115 tgggtcgtagttcttggca 133
           ||||||| |||||||||||
Sbjct: 614 tgggtcgaagttcttggca 596
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  135 bits (68), Expect = 4e-29
 Identities = 124/139 (89%), Gaps = 8/139 (5%)
 Strand = Plus / Minus

                                                                        
Query: 1    catgcccagcaatcgcttgatatgcgatgcgg-acttaggta-----ggtaaancatcag 54
            |||||||||||||||||||  ||||||||||| |||||||||     | |||| ||||||
Sbjct: 1582 catgcccagcaatcgcttgg-atgcgatgcggtacttaggtacaaaggataaaacatcag 1524

                                                                        
Query: 55   atattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 114
            ||||||||  |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 1523 atattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcctcgccgt 1465

                               
Query: 115  tgggtcgtagttcttggca 133
            ||||||| |||||||||||
Sbjct: 1464 tgggtcgaagttcttggca 1446
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  123 bits (62), Expect = 1e-25
 Identities = 71/74 (95%)
 Strand = Plus / Minus

                                                                        
Query: 61   aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 120
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1527 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1468

                          
Query: 121  gtagttcttggcat 134
            | ||||||||||||
Sbjct: 1467 gaagttcttggcat 1454
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  123 bits (62), Expect = 1e-25
 Identities = 71/74 (95%)
 Strand = Plus / Minus

                                                                        
Query: 61   aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 120
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                          
Query: 121  gtagttcttggcat 134
            | ||||||||||||
Sbjct: 1429 gaagttcttggcat 1416
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>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  111 bits (56), Expect = 5e-22
 Identities = 62/64 (96%)
 Strand = Plus / Plus

                                                                          
Query: 70     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 129
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                  
Query: 130    ggca 133
              ||||
Sbjct: 107218 ggca 107221



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                     
Query: 88     gcagctgccgtcgtcgctccttgccgttgggtcgtagtt 126
              ||||||||||||||||||||| || || |||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 112091
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  111 bits (56), Expect = 5e-22
 Identities = 62/64 (96%)
 Strand = Plus / Plus

                                                                         
Query: 70    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 129
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                 
Query: 130   ggca 133
             ||||
Sbjct: 29099 ggca 29102



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 88    gcagctgccgtcgtcgctccttgccgttgggtcgtagtt 126
             ||||||||||||||||||||| || || |||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 33968
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>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  111 bits (56), Expect = 5e-22
 Identities = 62/64 (96%)
 Strand = Plus / Minus

                                                                        
Query: 70   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 129
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                
Query: 130  ggca 133
            ||||
Sbjct: 1460 ggca 1457
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>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  111 bits (56), Expect = 5e-22
 Identities = 62/64 (96%)
 Strand = Plus / Minus

                                                                        
Query: 70   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 129
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                
Query: 130  ggca 133
            ||||
Sbjct: 1370 ggca 1367
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  111 bits (56), Expect = 5e-22
 Identities = 62/64 (96%)
 Strand = Plus / Plus

                                                                            
Query: 70       tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 129
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                    
Query: 130      ggca 133
                ||||
Sbjct: 28302361 ggca 28302364



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 88       gcagctgccgtcgtcgctccttgccgttgggtcgtagtt 126
                ||||||||||||||||||||| || || |||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 28307230
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  111 bits (56), Expect = 5e-22
 Identities = 62/64 (96%)
 Strand = Plus / Minus

                                                                        
Query: 70   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 129
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                
Query: 130  ggca 133
            ||||
Sbjct: 1454 ggca 1451
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  111 bits (56), Expect = 5e-22
 Identities = 62/64 (96%)
 Strand = Plus / Minus

                                                                        
Query: 70   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 129
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                
Query: 130  ggca 133
            ||||
Sbjct: 1492 ggca 1489
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  111 bits (56), Expect = 5e-22
 Identities = 62/64 (96%)
 Strand = Plus / Minus

                                                                        
Query: 70   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 129
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                
Query: 130  ggca 133
            ||||
Sbjct: 1491 ggca 1488
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  111 bits (56), Expect = 5e-22
 Identities = 62/64 (96%)
 Strand = Plus / Minus

                                                                        
Query: 70   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 129
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                
Query: 130  ggca 133
            ||||
Sbjct: 1275 ggca 1272
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  111 bits (56), Expect = 5e-22
 Identities = 62/64 (96%)
 Strand = Plus / Plus

                                                                            
Query: 70       tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 129
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                    
Query: 130      ggca 133
                ||||
Sbjct: 28284810 ggca 28284813



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 88       gcagctgccgtcgtcgctccttgccgttgggtcgtagtt 126
                ||||||||||||||||||||| || || |||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 28289679
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>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  111 bits (56), Expect = 5e-22
 Identities = 62/64 (96%)
 Strand = Plus / Minus

                                                                        
Query: 70   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 129
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                
Query: 130  ggca 133
            ||||
Sbjct: 1496 ggca 1493
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>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  111 bits (56), Expect = 5e-22
 Identities = 62/64 (96%)
 Strand = Plus / Minus

                                                                        
Query: 70   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 129
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                
Query: 130  ggca 133
            ||||
Sbjct: 1405 ggca 1402
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>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score = 99.6 bits (50), Expect = 2e-18
 Identities = 56/58 (96%)
 Strand = Plus / Minus

                                                                     
Query: 76  aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggca 133
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggca 36
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>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 60/64 (93%)
 Strand = Plus / Minus

                                                                       
Query: 70  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 129
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

               
Query: 130 ggca 133
           ||||
Sbjct: 75  ggca 72
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>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                                
Query: 70   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcg 121
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg 1511
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>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 58.0 bits (29), Expect = 7e-06
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 80   gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattc 136
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  ||||||||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattc 1394
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>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 58.0 bits (29), Expect = 7e-06
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 80   gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattc 136
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  ||||||||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattc 1219
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>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 58.0 bits (29), Expect = 7e-06
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 80   gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattc 136
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  ||||||||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattc 1093
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>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 58.0 bits (29), Expect = 7e-06
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 80   gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattc 136
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  ||||||||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattc 1249
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                           
Query: 70      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 129
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                   
Query: 130     ggca 133
               ||||
Sbjct: 4541353 ggca 4541350



 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 89       cagctgccgtcgtcgctcc 107
                |||||||||||||||||||
Sbjct: 13186146 cagctgccgtcgtcgctcc 13186128
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>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                         
Query: 70    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 129
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                 
Query: 130   ggca 133
             ||||
Sbjct: 84727 ggca 84724
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>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     tcagatattaaaagtggcat 70
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077
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>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     tcagatattaaaagtggcat 70
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583
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>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    tcagatattaaaagtggcat 70
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911
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>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 79   ggtgtaaaggcagctgccgtcgtcgctc 106
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
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>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    tggcatgcttaaaaggtgta 84
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254
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>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 50     atcagatattaaaagtggcatgct 73
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852
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>gb|AC139060.5| Mus musculus chromosome 16, clone RP23-58G17, complete sequence
          Length = 196065

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                      
Query: 39   gtaggtaaancatcagatattaaaag 64
            |||||||||  |||||||||||||||
Sbjct: 5556 gtaggtaaataatcagatattaaaag 5581
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>gb|AC112956.12| Mus musculus chromosome 9, clone RP23-412P4, complete sequence
          Length = 197841

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 56     tattaaaagtggcatgcttaaaa 78
              |||||||||||||| ||||||||
Sbjct: 167602 tattaaaagtggcaggcttaaaa 167580
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>emb|CR788228.11| Zebrafish DNA sequence from clone CH211-15N4 in linkage group 3,
             complete sequence
          Length = 156998

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 61    aaagtggcatgcttaaaag 79
             |||||||||||||||||||
Sbjct: 15943 aaagtggcatgcttaaaag 15925
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>gb|AC136915.14| Mus musculus chromosome 16, clone RP23-65O24, complete sequence
          Length = 140233

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                       
Query: 39    gtaggtaaancatcagatattaaaag 64
             |||||||||  |||||||||||||||
Sbjct: 59152 gtaggtaaataatcagatattaaaag 59127
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>gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete sequence
          Length = 107889

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 53    agatattaaaagtggcatgctta 75
             |||| ||||||||||||||||||
Sbjct: 51524 agatgttaaaagtggcatgctta 51546
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>gb|AC160139.2| Mus musculus BAC clone RP23-93P8 from chromosome 9, complete sequence
          Length = 208009

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 56     tattaaaagtggcatgcttaaaa 78
              |||||||||||||| ||||||||
Sbjct: 193364 tattaaaagtggcaggcttaaaa 193386
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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 24      gcgatgcggacttaggtag 42
               |||||||||||||||||||
Sbjct: 2937451 gcgatgcggacttaggtag 2937469
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>gb|AC097649.3| Homo sapiens BAC clone RP11-92D1 from 4, complete sequence
          Length = 103242

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                       
Query: 45    aaancatcagatattaaaagtggcat 70
             ||| ||||||| ||||||||||||||
Sbjct: 95857 aaagcatcagaaattaaaagtggcat 95882
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>dbj|AP005692.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OSJNBa0055N01
          Length = 154783

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 89   cagctgccgtcgtcgctcc 107
            |||||||||||||||||||
Sbjct: 7580 cagctgccgtcgtcgctcc 7562
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>dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0048A13
          Length = 137680

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 89     cagctgccgtcgtcgctcc 107
              |||||||||||||||||||
Sbjct: 108236 cagctgccgtcgtcgctcc 108218
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>emb|BX323852.5| Mouse DNA sequence from clone RP23-167N11 on chromosome 11, complete
             sequence
          Length = 18422

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 44    taaancatcagatattaaaagt 65
             |||| |||||||||||||||||
Sbjct: 14978 taaaccatcagatattaaaagt 14999
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>gb|DQ304649.1| Homo sapiens anaphase promoting complex subunit 10 (ANAPC10) gene,
             complete cds
          Length = 106979

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                       
Query: 45    aaancatcagatattaaaagtggcat 70
             ||| ||||||| ||||||||||||||
Sbjct: 72507 aaagcatcagaaattaaaagtggcat 72482


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 768,072
Number of Sequences: 3902068
Number of extensions: 768072
Number of successful extensions: 51244
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51067
Number of HSP's gapped (non-prelim): 170
length of query: 139
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 118
effective length of database: 17,151,101,840
effective search space: 2023830017120
effective search space used: 2023830017120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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