ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4d20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ALR2_YEAST (P43553) Magnesium transporter ALR2 (Aluminum resista... 35 0.21
2PTH_SYMTH (Q67JD0) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH) 30 9.0

>ALR2_YEAST (P43553) Magnesium transporter ALR2 (Aluminum resistance protein 2)|
          Length = 858

 Score = 35.0 bits (79), Expect = 0.21
 Identities = 24/77 (31%), Positives = 35/77 (45%)
 Frame = +1

Query: 154 SRVRAHAQPQETSTEAKAVAVEGRDSETSRQH*LFHIHTYIHTMIVGISFSPLRMYAQAF 333
           SRV  H++  + S          RDS+ + +   F +   +HT + G+ F  L  YAQ  
Sbjct: 251 SRVSFHSEISQAS----------RDSQETEEDVCFPMFRLLHTRVNGVDFDELEEYAQ-I 299

Query: 334 SPATMKSSAAQHSRNCE 384
           S A    S A H R+ E
Sbjct: 300 SNAERNLSLANHQRHSE 316



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>PTH_SYMTH (Q67JD0) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)|
          Length = 189

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 658 PVLRMGIGRPTPPWTWSRCFVQPAGSYEAMTPRGIMVQSIE 536
           P LR+GIGRP P W      + P G  +A      + +++E
Sbjct: 130 PRLRIGIGRPAPGWEVIDWVLAPFGPDDAAAVAAALPRAVE 170


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,289,369
Number of Sequences: 219361
Number of extensions: 2007564
Number of successful extensions: 4413
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4413
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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