ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4d14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
2dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
3ref|XM_466747.1| Oryza sativa (japonica cultivar-group), mRNA 64 7e-07
4gb|AC097451.2| Homo sapiens BAC clone RP11-1E6 from 4, complete ... 48 0.039
5gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 44 0.61
6gb|AC079750.5| Homo sapiens BAC clone RP11-33L3 from 2, complete... 44 0.61
7gb|AC159008.2| Mus musculus BAC clone RP23-14E14 from chromosome... 42 2.4
8gb|AC135561.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.4
9emb|CR407551.12| Zebrafish DNA sequence from clone DKEYP-44H3 in... 42 2.4
10emb|AL832510.1|HSM803818 Homo sapiens mRNA; cDNA DKFZp667A191 (f... 42 2.4
11gb|BC024187.2| Homo sapiens DEAH (Asp-Glu-Ala-His) box polypepti... 42 2.4
12emb|AL592222.11| Mouse DNA sequence from clone RP23-366M19 on ch... 42 2.4
13emb|CR859890.1| Pongo pygmaeus mRNA; cDNA DKFZp469B1516 (from cl... 42 2.4
14gb|AC091271.8| Homo sapiens chromosome 17, clone RP11-758H9, com... 42 2.4
15ref|XM_942276.1| PREDICTED: Homo sapiens DEAH (Asp-Glu-Ala-His) ... 42 2.4
16ref|XM_945868.1| PREDICTED: Homo sapiens DEAH (Asp-Glu-Ala-His) ... 42 2.4
17gb|DQ004278.1| Pseudomonas viridiflava strain RMX3.1b pectate ly... 42 2.4
18ref|NM_024612.3| Homo sapiens DEAH (Asp-Glu-Ala-His) box polypep... 42 2.4
19gb|AF260270.1|AF260270 Homo sapiens PAD mRNA, complete cds 42 2.4
20gb|AC040965.8| Homo sapiens chromosome 8, clone RP11-481K20, com... 42 2.4
21dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
22dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
23gb|AF461690.1| Homo sapiens DEAD-box containing helicase-like pr... 42 2.4
24gb|AC068282.8| Homo sapiens BAC clone RP11-314L11 from 2, comple... 42 2.4
25gb|AC105038.5| Homo sapiens chromosome 8, clone CTD-2351P9, comp... 42 2.4
26dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
27dbj|AK119284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
28dbj|AK025713.1| Homo sapiens cDNA: FLJ22060 fis, clone HEP10094 42 2.4
29emb|AL359951.4|CNS05TF3 Human chromosome 14 DNA sequence BAC R-1... 42 2.4
30emb|CT573129.9| Zebrafish DNA sequence from clone CH73-266E21 in... 42 2.4
31gb|AC006270.1|AC006270 Homo sapiens chromosome 17, clone hRPK.55... 42 2.4
32gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.4
33ref|XM_648292.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 9.5
34gb|AC122726.21| Medicago truncatula clone mth2-23o24, complete s... 40 9.5
35emb|AL590611.7| Human DNA sequence from clone RP11-138K10 on chr... 40 9.5
36emb|CR391999.9| Zebrafish DNA sequence from clone CH211-261L7 in... 40 9.5
37gb|AC010600.6| Homo sapiens chromosome 5 clone CTC-564D18, compl... 40 9.5
38gb|AC020936.5| Homo sapiens chromosome 5 clone CTD-2291O8, compl... 40 9.5
39emb|CR391943.6| Zebrafish DNA sequence from clone DKEY-15M21 in ... 40 9.5
40gb|AC016558.6| Homo sapiens chromosome 5 clone CTC-420I8, comple... 40 9.5
41gb|AF319521.1|AF319521 Homo sapiens ARG147 mRNA, complete cds 40 9.5
42dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
43gb|AC079227.12| Homo sapiens BAC clone RP11-80B23 from 4, comple... 40 9.5
44gb|AC079782.6| Homo sapiens BAC clone RP11-385J23 from 2, comple... 40 9.5
45gb|AC008430.3|AC008430 Homo sapiens chromosome 5 clone CTC-310F2... 40 9.5
46dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
47gb|AC154321.2| Mus musculus BAC clone RP23-316B9 from 13, comple... 40 9.5
48emb|BX649543.6| Zebrafish DNA sequence from clone DKEY-238K23 in... 40 9.5
49gb|AC151997.2| Mus musculus BAC clone RP23-138O21 from 8, comple... 40 9.5
50emb|AL607142.16| Mouse DNA sequence from clone RP23-98J9 on chro... 40 9.5 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 104/125 (83%)
 Strand = Plus / Plus

                                                                            
Query: 537      acctcaaactccaacacagccaacacggcttttgggatagcaaccattcttagatcgacg 596
                ||||||||||||||   | |||| || ||| | ||||||||||||||||||||||| |  
Sbjct: 24482026 acctcaaactccaaacgaaccaataccgctctggggatagcaaccattcttagatcaaga 24482085

                                                                            
Query: 597      ctgccgtggtggccagtgttaatgtgccaatggagcctttcatattctgcatagaaagat 656
                 ||| |  ||| |||||||  |||||||||||||||||||||  |||| |||||||||||
Sbjct: 24482086 gtgctgaagtgaccagtgtcgatgtgccaatggagcctttcaagttctccatagaaagat 24482145

                     
Query: 657      ggagc 661
                |||||
Sbjct: 24482146 ggagc 24482150



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 122/152 (80%)
 Strand = Plus / Plus

                                                                            
Query: 537      acctcaaactccaacacagccaacacggcttttgggatagcaaccattcttagatcgacg 596
                ||||||||||||||  || |||  || ||||| ||||||||||  ||| | ||||| | |
Sbjct: 24400667 acctcaaactccaaatcaaccaggaccgctttcgggatagcaaaaattgtcagatcaatg 24400726

                                                                            
Query: 597      ctgccgtggtggccagtgttaatgtgccaatggagcctttcatattctgcatagaaagat 656
                 |||||   || |||||||| ||||||||   |||| ||||| | |||||||||||||||
Sbjct: 24400727 gtgccgaaatgaccagtgttgatgtgccatatgagcttttcaaaatctgcatagaaagat 24400786

                                                
Query: 657      ggagcatacaccgaatatccgtctattaacac 688
                ||||| || |  |||||||| |||||||||||
Sbjct: 24400787 ggagcgtagatagaatatccatctattaacac 24400818



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 414      gtgaccggtggtagcctgcaaacacgcaacttgccattgaag 455
                |||| |||||||||| ||| ||||| ||||||||||||||||
Sbjct: 24481903 gtgaacggtggtagcttgccaacactcaacttgccattgaag 24481944



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 152      gacatggttcacacaggctagaccatgt 179
                ||||||||||||||| | ||||||||||
Sbjct: 24400289 gacatggttcacacatgatagaccatgt 24400316
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>dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1792_D02
          Length = 141649

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 104/125 (83%)
 Strand = Plus / Plus

                                                                          
Query: 537    acctcaaactccaacacagccaacacggcttttgggatagcaaccattcttagatcgacg 596
              ||||||||||||||   | |||| || ||| | ||||||||||||||||||||||| |  
Sbjct: 110232 acctcaaactccaaacgaaccaataccgctctggggatagcaaccattcttagatcaaga 110291

                                                                          
Query: 597    ctgccgtggtggccagtgttaatgtgccaatggagcctttcatattctgcatagaaagat 656
               ||| |  ||| |||||||  |||||||||||||||||||||  |||| |||||||||||
Sbjct: 110292 gtgctgaagtgaccagtgtcgatgtgccaatggagcctttcaagttctccatagaaagat 110351

                   
Query: 657    ggagc 661
              |||||
Sbjct: 110352 ggagc 110356



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 122/152 (80%)
 Strand = Plus / Plus

                                                                         
Query: 537   acctcaaactccaacacagccaacacggcttttgggatagcaaccattcttagatcgacg 596
             ||||||||||||||  || |||  || ||||| ||||||||||  ||| | ||||| | |
Sbjct: 28873 acctcaaactccaaatcaaccaggaccgctttcgggatagcaaaaattgtcagatcaatg 28932

                                                                         
Query: 597   ctgccgtggtggccagtgttaatgtgccaatggagcctttcatattctgcatagaaagat 656
              |||||   || |||||||| ||||||||   |||| ||||| | |||||||||||||||
Sbjct: 28933 gtgccgaaatgaccagtgttgatgtgccatatgagcttttcaaaatctgcatagaaagat 28992

                                             
Query: 657   ggagcatacaccgaatatccgtctattaacac 688
             ||||| || |  |||||||| |||||||||||
Sbjct: 28993 ggagcgtagatagaatatccatctattaacac 29024



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                        
Query: 414    gtgaccggtggtagcctgcaaacacgcaacttgccattgaag 455
              |||| |||||||||| ||| ||||| ||||||||||||||||
Sbjct: 110109 gtgaacggtggtagcttgccaacactcaacttgccattgaag 110150



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 152   gacatggttcacacaggctagaccatgt 179
             ||||||||||||||| | ||||||||||
Sbjct: 28495 gacatggttcacacatgatagaccatgt 28522
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>ref|XM_466747.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1248

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                       
Query: 609 ccagtgttaatgtgccaatggagcctttcatattctgcatagaaagatggagcatacacc 668
           |||||||| ||||||||   |||| ||||| | |||||||||||||||||||| || |  
Sbjct: 893 ccagtgttgatgtgccatatgagcttttcaaaatctgcatagaaagatggagcgtagata 834

                               
Query: 669 gaatatccgtctattaacac 688
           |||||||| |||||||||||
Sbjct: 833 gaatatccatctattaacac 814



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 152  gacatggttcacacaggctagaccatgt 179
            ||||||||||||||| | ||||||||||
Sbjct: 1243 gacatggttcacacatgatagaccatgt 1216
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>gb|AC097451.2| Homo sapiens BAC clone RP11-1E6 from 4, complete sequence
          Length = 146808

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 92    ctaagaaaacacttttatataaaa 115
             ||||||||||||||||||||||||
Sbjct: 32844 ctaagaaaacacttttatataaaa 32867
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 289     taatgaaaatatccgggaattt 310
               ||||||||||||||||||||||
Sbjct: 1008449 taatgaaaatatccgggaattt 1008428
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>gb|AC079750.5| Homo sapiens BAC clone RP11-33L3 from 2, complete sequence
          Length = 103089

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 93    taagaaaacacttttatataaaagta 118
             ||||||||||||||||| ||||||||
Sbjct: 57177 taagaaaacacttttatttaaaagta 57152
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>gb|AC159008.2| Mus musculus BAC clone RP23-14E14 from chromosome 7, complete sequence
          Length = 239149

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 102    acttttatataaaagtatatt 122
              |||||||||||||||||||||
Sbjct: 113654 acttttatataaaagtatatt 113674
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>gb|AC135561.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0086N07 map S790A, complete sequence
          Length = 178523

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 9     aacgttggacatataaatcta 29
             |||||||||||||||||||||
Sbjct: 54320 aacgttggacatataaatcta 54340
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>emb|CR407551.12| Zebrafish DNA sequence from clone DKEYP-44H3 in linkage group 6,
             complete sequence
          Length = 95004

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 215   ttgaaatttttgtagagcttc 235
             |||||||||||||||||||||
Sbjct: 23358 ttgaaatttttgtagagcttc 23378
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>emb|AL832510.1|HSM803818 Homo sapiens mRNA; cDNA DKFZp667A191 (from clone DKFZp667A191)
          Length = 2914

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 104  ttttatataaaagtatattgt 124
            |||||||||||||||||||||
Sbjct: 2351 ttttatataaaagtatattgt 2371
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>gb|BC024187.2| Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 40, mRNA (cDNA
            clone MGC:26626 IMAGE:4822080), complete cds
          Length = 3587

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 104  ttttatataaaagtatattgt 124
            |||||||||||||||||||||
Sbjct: 3048 ttttatataaaagtatattgt 3068
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>emb|AL592222.11| Mouse DNA sequence from clone RP23-366M19 on chromosome 11 Contains a
              ribosomal protein L13a (Rpl13a) pseudogene, the 5' end of a
              novel gene, the gene for peptidyl-tRNA hydrolase 2,
              mitochondrial precursor (PTH2), the Cltc gene for clathrin
              heavy polypeptide (Hc) and the 3' end of the Dhx40 gene for
              DEAH (Asp-Glu-Ala-His) box polypeptide 40, complete
              sequence
          Length = 160796

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 104    ttttatataaaagtatattgt 124
              |||||||||||||||||||||
Sbjct: 144311 ttttatataaaagtatattgt 144291
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>emb|CR859890.1| Pongo pygmaeus mRNA; cDNA DKFZp469B1516 (from clone DKFZp469B1516)
          Length = 3598

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 104  ttttatataaaagtatattgt 124
            |||||||||||||||||||||
Sbjct: 3066 ttttatataaaagtatattgt 3086
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>gb|AC091271.8| Homo sapiens chromosome 17, clone RP11-758H9, complete sequence
          Length = 135784

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 104    ttttatataaaagtatattgt 124
              |||||||||||||||||||||
Sbjct: 108669 ttttatataaaagtatattgt 108649
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>ref|XM_942276.1| PREDICTED: Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 40,
            transcript variant 2 (DHX40), mRNA
          Length = 3816

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 104  ttttatataaaagtatattgt 124
            |||||||||||||||||||||
Sbjct: 3067 ttttatataaaagtatattgt 3087
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>ref|XM_945868.1| PREDICTED: Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 40,
            transcript variant 3 (DHX40), mRNA
          Length = 3871

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 104  ttttatataaaagtatattgt 124
            |||||||||||||||||||||
Sbjct: 3122 ttttatataaaagtatattgt 3142
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>gb|DQ004278.1| Pseudomonas viridiflava strain RMX3.1b pectate lyase gene, complete
           cds
          Length = 1140

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 172 gaccatgtgaccttcactgac 192
           |||||||||||||||||||||
Sbjct: 544 gaccatgtgaccttcactgac 564
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>ref|NM_024612.3| Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 40 (DHX40), mRNA
          Length = 3656

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 104  ttttatataaaagtatattgt 124
            |||||||||||||||||||||
Sbjct: 3133 ttttatataaaagtatattgt 3153
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>gb|AF260270.1|AF260270 Homo sapiens PAD mRNA, complete cds
          Length = 3742

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 104  ttttatataaaagtatattgt 124
            |||||||||||||||||||||
Sbjct: 3201 ttttatataaaagtatattgt 3221
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>gb|AC040965.8| Homo sapiens chromosome 8, clone RP11-481K20, complete sequence
          Length = 189188

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 281  caatgtcgtaatgaaaatatc 301
            |||||||||||||||||||||
Sbjct: 7177 caatgtcgtaatgaaaatatc 7157
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 9        aacgttggacatataaatcta 29
                |||||||||||||||||||||
Sbjct: 13129760 aacgttggacatataaatcta 13129740
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 9       aacgttggacatataaatcta 29
               |||||||||||||||||||||
Sbjct: 5172767 aacgttggacatataaatcta 5172787
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>gb|AF461690.1| Homo sapiens DEAD-box containing helicase-like protein mRNA, complete
            cds
          Length = 3656

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 104  ttttatataaaagtatattgt 124
            |||||||||||||||||||||
Sbjct: 3133 ttttatataaaagtatattgt 3153
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>gb|AC068282.8| Homo sapiens BAC clone RP11-314L11 from 2, complete sequence
          Length = 205342

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 534   tgaacctcaaactccaacaca 554
             |||||||||||||||||||||
Sbjct: 44651 tgaacctcaaactccaacaca 44671
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>gb|AC105038.5| Homo sapiens chromosome 8, clone CTD-2351P9, complete sequence
          Length = 98334

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 281   caatgtcgtaatgaaaatatc 301
             |||||||||||||||||||||
Sbjct: 20660 caatgtcgtaatgaaaatatc 20680
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>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1715_A07
          Length = 130907

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 9     aacgttggacatataaatcta 29
             |||||||||||||||||||||
Sbjct: 39481 aacgttggacatataaatcta 39501
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>dbj|AK119284.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-C09, full
            insert sequence
          Length = 2705

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 9    aacgttggacatataaatcta 29
            |||||||||||||||||||||
Sbjct: 1292 aacgttggacatataaatcta 1312
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>dbj|AK025713.1| Homo sapiens cDNA: FLJ22060 fis, clone HEP10094
          Length = 2150

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 104  ttttatataaaagtatattgt 124
            |||||||||||||||||||||
Sbjct: 1605 ttttatataaaagtatattgt 1625
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>emb|AL359951.4|CNS05TF3 Human chromosome 14 DNA sequence BAC R-196A3 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176202

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 632   cctttcatattctgcatagaa 652
             |||||||||||||||||||||
Sbjct: 44046 cctttcatattctgcatagaa 44026
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>emb|CT573129.9| Zebrafish DNA sequence from clone CH73-266E21 in linkage group 13,
            complete sequence
          Length = 47008

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 112  aaaagtatattgtacaaacct 132
            |||||||||||||||||||||
Sbjct: 9189 aaaagtatattgtacaaacct 9169



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 112  aaaagtatattgtacaaacct 132
            |||||||||||||||||||||
Sbjct: 8888 aaaagtatattgtacaaacct 8868
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>gb|AC006270.1|AC006270 Homo sapiens chromosome 17, clone hRPK.556_O_9, complete sequence
          Length = 179929

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 103   cttttatataaaagtatattg 123
             |||||||||||||||||||||
Sbjct: 49248 cttttatataaaagtatattg 49268
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 9        aacgttggacatataaatcta 29
                |||||||||||||||||||||
Sbjct: 13209939 aacgttggacatataaatcta 13209919
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>ref|XM_648292.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (84.t00015)
            partial mRNA
          Length = 2979

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 96   gaaaacacttttatataaaa 115
            ||||||||||||||||||||
Sbjct: 1031 gaaaacacttttatataaaa 1012
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>gb|AC122726.21| Medicago truncatula clone mth2-23o24, complete sequence
          Length = 130999

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 536   aacctcaaactccaacacagccaa 559
             ||||||||| ||||||||||||||
Sbjct: 86574 aacctcaaaatccaacacagccaa 86597
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>emb|AL590611.7| Human DNA sequence from clone RP11-138K10 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 77888

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    aaaacacttttatataaaag 116
             ||||||||||||||||||||
Sbjct: 47074 aaaacacttttatataaaag 47093
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>emb|CR391999.9| Zebrafish DNA sequence from clone CH211-261L7 in linkage group 5,
              complete sequence
          Length = 176753

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    tataaaagtatattgtacaa 128
              ||||||||||||||||||||
Sbjct: 168324 tataaaagtatattgtacaa 168305
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>gb|AC010600.6| Homo sapiens chromosome 5 clone CTC-564D18, complete sequence
          Length = 173349

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    ataaaagtatattgtacaaa 129
              ||||||||||||||||||||
Sbjct: 139046 ataaaagtatattgtacaaa 139027
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>gb|AC020936.5| Homo sapiens chromosome 5 clone CTD-2291O8, complete sequence
          Length = 162884

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    ataaaagtatattgtacaaa 129
              ||||||||||||||||||||
Sbjct: 137578 ataaaagtatattgtacaaa 137597
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>emb|CR391943.6| Zebrafish DNA sequence from clone DKEY-15M21 in linkage group 9, complete
              sequence
          Length = 212667

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    tataaaagtatattgtacaa 128
              ||||||||||||||||||||
Sbjct: 200995 tataaaagtatattgtacaa 200976
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>gb|AC016558.6| Homo sapiens chromosome 5 clone CTC-420I8, complete sequence
          Length = 162884

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    ataaaagtatattgtacaaa 129
              ||||||||||||||||||||
Sbjct: 137578 ataaaagtatattgtacaaa 137597
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>gb|AF319521.1|AF319521 Homo sapiens ARG147 mRNA, complete cds
          Length = 2804

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 105  tttatataaaagtatattgt 124
            ||||||||||||||||||||
Sbjct: 2256 tttatataaaagtatattgt 2275
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 636      tcatattctgcatagaaaga 655
                ||||||||||||||||||||
Sbjct: 16947139 tcatattctgcatagaaaga 16947158
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>gb|AC079227.12| Homo sapiens BAC clone RP11-80B23 from 4, complete sequence
          Length = 181942

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     taagaaaacacttttatata 112
              ||||||||||||||||||||
Sbjct: 107771 taagaaaacacttttatata 107752
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>gb|AC079782.6| Homo sapiens BAC clone RP11-385J23 from 2, complete sequence
          Length = 85411

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    taagaaaacacttttatata 112
             ||||||||||||||||||||
Sbjct: 58995 taagaaaacacttttatata 59014
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>gb|AC008430.3|AC008430 Homo sapiens chromosome 5 clone CTC-310F2, complete sequence
          Length = 199912

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    ataaaagtatattgtacaaa 129
              ||||||||||||||||||||
Sbjct: 188406 ataaaagtatattgtacaaa 188387
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>dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1484_G09
          Length = 124695

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 636   tcatattctgcatagaaaga 655
             ||||||||||||||||||||
Sbjct: 94150 tcatattctgcatagaaaga 94169
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>gb|AC154321.2| Mus musculus BAC clone RP23-316B9 from 13, complete sequence
          Length = 177816

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   agtgacatggttcacacagg 168
             ||||||||||||||||||||
Sbjct: 58675 agtgacatggttcacacagg 58656
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>emb|BX649543.6| Zebrafish DNA sequence from clone DKEY-238K23 in linkage group 20,
            complete sequence
          Length = 42367

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 109  tataaaagtatattgtacaa 128
            ||||||||||||||||||||
Sbjct: 9020 tataaaagtatattgtacaa 9001
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>gb|AC151997.2| Mus musculus BAC clone RP23-138O21 from 8, complete sequence
          Length = 201556

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 608    gccagtgttaatgtgccaat 627
              ||||||||||||||||||||
Sbjct: 151349 gccagtgttaatgtgccaat 151330
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>emb|AL607142.16| Mouse DNA sequence from clone RP23-98J9 on chromosome 4, complete
              sequence
          Length = 188716

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 523    ccccaagatgatgaacctcaaactccaa 550
              ||||||||||  ||||||||||||||||
Sbjct: 166365 ccccaagatgcagaacctcaaactccaa 166338


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,465,139
Number of Sequences: 3902068
Number of extensions: 6465139
Number of successful extensions: 172339
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 171959
Number of HSP's gapped (non-prelim): 378
length of query: 692
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 669
effective length of database: 17,143,297,704
effective search space: 11468866163976
effective search space used: 11468866163976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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