>SCRL1_ORYSA (Q84TX2) SCAR-like protein 1|
          Length = 2097

 Score = 86.3 bits (212), Expect = 7e-17
 Identities = 45/70 (64%), Positives = 53/70 (75%)
 Frame = -2

Query: 587  KVEELAPTADKPNTXDKNSWLEQIRNKTFDLKPVGSAQPTSMRAPARASSGNLRVAAIIE 408
            KV EL    DK    ++N  LEQIRNKTF+LKPV SA+  ++R P RAS+ NL+VAAIIE
Sbjct: 2013 KVSELVAPTDKSKPNERNLLLEQIRNKTFNLKPVSSAKQPTIRTPPRASTRNLKVAAIIE 2072

Query: 407  KANAIRQAVG 378
            KANAIRQAVG
Sbjct: 2073 KANAIRQAVG 2082

>SCAR2_ARATH (Q5XPJ9) Protein SCAR2 (AtSCAR2) (Protein WAVE4) (Protein DISTORTED3)|
            (Protein IRREGULAR TRICHOME BRANCH1)
          Length = 1399

 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 31/69 (44%), Positives = 41/69 (59%)
 Frame = -2

Query: 587  KVEELAPTADKPNTXDKNSWLEQIRNKTFDLKPVGSAQPTSMRAPARASSGNLRVAAIIE 408
            KV E+     K    DK+S L QIRNK+ +LKP  + +P+    P      +LRVAAI+E
Sbjct: 1320 KVSEMVHPPIKSKQDDKDSLLAQIRNKSVNLKPAVTTRPSIQTGPRT----DLRVAAILE 1375

Query: 407  KANAIRQAV 381
            KAN IR A+
Sbjct: 1376 KANTIRMAM 1384

>SCRL2_ORYSA (Q5QNA6) SCAR-like protein 2|
          Length = 1334

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 28/60 (46%), Positives = 39/60 (65%)
 Frame = -2

Query: 560  DKPNTXDKNSWLEQIRNKTFDLKPVGSAQPTSMRAPARASSGNLRVAAIIEKANAIRQAV 381
            D  N  ++   L+QIR+KTF+L+   +A  T+  +P  A+S    V AI+EKANAIRQAV
Sbjct: 1265 DTKNLDEREELLQQIRSKTFNLRRT-NASKTNTSSPTTANSS---VVAILEKANAIRQAV 1320

>SCAR4_ARATH (Q5XPJ6) Protein SCAR4 (AtSCAR4) (Protein WAVE3)|
          Length = 1170

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = -2

Query: 587  KVEELAPTADKPNTXDKNSWLEQIRNKTFDLKPV-GSAQPTSMRAPARASSGNLRVAAII 411
            KV E   T       + +S LE IR+K+F+L+P   S +P    A  +    NL+VAAI+
Sbjct: 1090 KVSEGNRTHVGARVDENDSLLEIIRSKSFNLRPADASGRPNFQVAVPKT---NLKVAAIL 1146

Query: 410  EKANAIRQAV 381
            EKAN +RQA+
Sbjct: 1147 EKANTLRQAM 1156

>SCAR3_ARATH (Q9LP46) Protein SCAR3 (AtSCAR3) (Protein WAVE2)|
          Length = 1020

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 30/87 (34%), Positives = 46/87 (52%)
 Frame = -2

Query: 641  TDKPNPNDKNLWLEQIRXKVEELAPTADKPNTXDKNSWLEQIRNKTFDLKPVGSAQPTSM 462
            T  P P  K      ++  V E   +A+   T +   +L+QIR + F+L+PV     +S 
Sbjct: 926  TSAPKPEIK----AHLKNNVREEKQSANAKET-ETGDFLQQIRTQQFNLRPVVMTTTSSA 980

Query: 461  RAPARASSGNLRVAAIIEKANAIRQAV 381
             A       N +++AI+EKAN+IRQAV
Sbjct: 981  TATTDPII-NTKISAILEKANSIRQAV 1006

>SCAR1_ARATH (Q6AWX6) Protein SCAR1 (AtSCAR1) (Protein WAVE1)|
          Length = 821

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 22/72 (30%), Positives = 38/72 (52%)
 Frame = -2

Query: 596 IRXKVEELAPTADKPNTXDKNSWLEQIRNKTFDLKPVGSAQPTSMRAPARASSGNLRVAA 417
           ++  V +   +    N  +   +L QIR K F+L+ V   + +S       ++ N  ++ 
Sbjct: 738 LKNNVRDYKQSHGNTNETEAGDFLHQIRTKQFNLRRVVRTKTSSSE-----TTMNTNISV 792

Query: 416 IIEKANAIRQAV 381
           I+EKAN+IRQAV
Sbjct: 793 ILEKANSIRQAV 804

>VL96_IRV1 (P22856) L96 protein|
          Length = 867

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = -2

Query: 632 PNPNDKNLWLEQIRXKVEELAPTADKPNTXDKNSWLEQIRNKTFDLKPVGSAQPTSMRAP 453
           P+PN +N+  ++++   + L  +  K +  DKN  +E I ++     PV  ++  S+R  
Sbjct: 194 PSPNIQNMKKKELKALAKALGASDKKLDKMDKNQLIEYILSRKKSPSPVRKSRSPSLRQR 253

Query: 452 ARA 444
           +R+
Sbjct: 254 SRS 256

>VILD_DICDI (Q8WQ85) Villidin|
          Length = 1704

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
 Frame = -2

Query: 635  KPNPNDKNLW--LEQIRXKVEELAPTADKPNTXDKNSWLEQIRNKTFDL--------KPV 486
            K +PN+  L+  + Q+      +APTA+  +       LE  R ++ D+        K V
Sbjct: 926  KISPNEFTLYDSMNQVVCNFRTIAPTAEFDDCTRWIDGLEAARKRSIDIIKMFGINEKEV 985

Query: 485  GSAQPTSMRAPARASSGNL 429
             S  P+S   P+  S+GNL
Sbjct: 986  LSPLPSSSSIPSSGSNGNL 1004

>HUNB_DROPO (O46252) Protein hunchback (Fragments)|
          Length = 193

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 20/104 (19%)
 Frame = -2

Query: 632 PNP-NDKNLWLEQIRXKVEE----------------LAPTADKPNTXDKNS--WLEQIRN 510
           PNP ++ NL LEQ   + ++                 A     P+  D+NS  WL  + N
Sbjct: 50  PNPPSNTNLQLEQYLKQQQQQQQLQQQQQQPMDTLCAAAMTPSPSNNDQNSLGWLSGLPN 109

Query: 509 KTFDLKPVGSA-QPTSMRAPARASSGNLRVAAIIEKANAIRQAV 381
               + P      PT+  A A A++    VAAI  +AN   QA+
Sbjct: 110 PMQTIMPANMRPSPTATTATAAAAAPTTTVAAIALQANDKLQAL 153

>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding|
           protein 1) (UV-damaged DNA-binding factor) (DDB p127
           subunit) (DDBa) (UV-damaged DNA-binding protein 1)
           (UV-DDB 1) (Xeroderma pigmentosum group E-complementing
           protein) (XPCe)
          Length = 1140

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 226 TSQDHKMACMAVHPVQDLAGLAPFC 300
           T  +H++AC+ + P+ D  GL+P C
Sbjct: 532 TEMEHEVACLDITPLGDSNGLSPLC 556

>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding|
           protein 1) (DDB p127 subunit) (DDBa) (UV-damaged
           DNA-binding protein 1) (UV-DDB 1)
          Length = 1140

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 226 TSQDHKMACMAVHPVQDLAGLAPFC 300
           T  +H++AC+ + P+ D  GL+P C
Sbjct: 532 TEMEHEVACLDITPLGDSNGLSPLC 556

>RRMJ_RHILO (Q983F8) Ribosomal RNA large subunit methyltransferase J (EC|
           2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S
           rRNA m2U2552 methyltransferase)
          Length = 265

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 290 HLSAKTRTPGGQNSWCSMCRSNYRRLRHRFPP 385
           H  AKT   G +N   SM + N+R + H  PP
Sbjct: 182 HFLAKTFQGGAENELLSMLKKNFRSVHHVKPP 213


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,188,296
Number of Sequences: 219361
Number of extensions: 2079588
Number of successful extensions: 5346
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5342
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)