ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3o04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470104.1| Oryza sativa (japonica cultivar-group), mRNA 119 1e-23
2dbj|AK104998.2| Oryza sativa (japonica cultivar-group) cDNA clon... 111 3e-21
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 74 6e-10
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
5gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genom... 74 6e-10
6ref|NM_126413.1| Arabidopsis thaliana unknown protein AT2G03630 ... 42 2.3
7ref|XM_755293.1| Ustilago maydis 521 hypothetical protein (UM042... 42 2.3
8gb|AC006836.7| Arabidopsis thaliana chromosome 2 clone F19B11 ma... 42 2.3
9gb|AC074250.6| Homo sapiens BAC clone RP11-622A1 from 4, complet... 42 2.3
10dbj|AP006197.1| Homo sapiens genomic DNA, chromosome 6, clone:RP... 42 2.3
11dbj|AP006195.1| Homo sapiens genomic DNA, chromosome 6, clone:RP... 42 2.3
12dbj|AB041992.1| Homo sapiens genomic DNA, chromosome 6q21, clone... 42 2.3
13dbj|AP002529.1| Homo sapiens genomic DNA, chromosome 6q21, anti-... 42 2.3
14ref|XM_956633.1| Neurospora crassa OR74A hypothetical protein (N... 40 9.0
15ref|XM_328396.1| Neurospora crassa OR74A hypothetical protein (N... 40 9.0
16gb|AC134256.4| Oryza sativa (japonica cultivar-group), complete ... 40 9.0
17gb|AC123057.4| Mus musculus BAC clone RP23-184N6 from 3, complet... 40 9.0
18gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome 40 9.0
19gb|AC157576.4| Mus musculus chromosome 18, clone RP24-252J16, co... 40 9.0
20emb|Z75741.1|HS107N3 Human DNA sequence from clone RP1-107N3 on ... 40 9.0
21emb|AL359208.14| Human DNA sequence from clone RP11-320N6 on chr... 40 9.0
22emb|AL356094.11| Human DNA sequence from clone RP11-64I5 on chro... 40 9.0
23emb|AL034418.5|HS1049G16 Human DNA sequence from clone RP5-1049G... 40 9.0
24ref|XM_782663.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 9.0
25dbj|AB158488.1| Sus scrofa TRIM39, FLJ22638, GNL1, CAT56 genes, ... 40 9.0
26gb|AC113405.2| Homo sapiens chromosome 5 clone RP11-467C9, compl... 40 9.0
27emb|BX537342.6| Zebrafish DNA sequence from clone CH211-198P11 i... 40 9.0
28dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
29dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
30gb|AC005517.7|AC005517 Homo sapiens chromosome 17, clone RP11-72... 40 9.0
31gb|AC022104.3|AC022104 Homo sapiens chromosome 5 clone CTC-257B1... 40 9.0
32dbj|D29697.1|RICYK9 Oryza sativa mRNA, partial homologous to cha... 40 9.0
33dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
34dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
35emb|BX088527.5| Zebrafish DNA sequence from clone DKEY-200F8 in ... 40 9.0
36dbj|AK108188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.0
37dbj|AK067810.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.0
38emb|CT485668.1| Leptosphaeria maculans : genomic region surround... 40 9.0
39gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
40gb|AC159826.1| Gallus gallus BAC clone CH261-57J20 from chromoso... 40 9.0
41gb|AC157662.2| Gallus gallus BAC clone CH261-183P12 from chromos... 40 9.0
42gb|L42357.1|CRARICH Carassius auratus regeneration induced 2',3'... 40 9.0
43gb|M29020.1|CHKOVAL5A Chicken ovalbumin gene, 5' flank 40 9.0
44emb|Z70042.1|HSU96H11 Human DNA sequence from clone LL0XNC01-96H... 40 9.0
45dbj|AB000801.2| Oryza sativa mRNA for chalcone synthase, complet... 40 9.0
46dbj|AB058397.1| Oryza sativa (japonica cultivar-group) CHS gene ... 40 9.0 
>ref|XM_470104.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 6690

 Score =  119 bits (60), Expect = 1e-23
 Identities = 147/176 (83%)
 Strand = Plus / Minus

                                                                        
Query: 349  ctccaattatcgtcgtcttcgtcatcgcttcccaccgcctgtcgtatggcattcgctttc 408
            |||||||||||  ||||||| || |||||||| ||||||||||||||||| |||||||||
Sbjct: 6350 ctccaattatctccgtcttcatcgtcgcttccaaccgcctgtcgtatggcgttcgctttc 6291

                                                                        
Query: 409  tctattattgcagcaactctcaagtttccactagaggccctagcaggggctctcatggat 468
            |||||||| ||||||||| ||||||| |   | ||||| |||| ||||| ||| || | |
Sbjct: 6290 tctattatggcagcaactttcaagttccttgttgaggctctaggaggggttctgattgtt 6231

                                                                    
Query: 469  gtcggttgagcagaacccactggtttcaggtcaaaggtcttgttccttatctgctc 524
            | | | | ||| |||| ||| || |||||||  |||||||||||||||||||||||
Sbjct: 6230 ggctgcttagctgaactcaccggcttcaggttgaaggtcttgttccttatctgctc 6175



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 87   gaacatgcctaccgtctgcagcctttgctgccgggggaggcaagtataca 136
            ||||||| ||||| || |||||||||||||| ||| |||| |||||||||
Sbjct: 6595 gaacatgactaccatcagcagcctttgctgctgggagaggaaagtataca 6546
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>dbj|AK104998.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-E05, full
            insert sequence
          Length = 1630

 Score =  111 bits (56), Expect = 3e-21
 Identities = 146/176 (82%)
 Strand = Plus / Minus

                                                                        
Query: 349  ctccaattatcgtcgtcttcgtcatcgcttcccaccgcctgtcgtatggcattcgctttc 408
            |||||||||||  ||||||| || |||||||| ||||||||||||||||| |||||||||
Sbjct: 1315 ctccaattatctccgtcttcatcgtcgcttccaaccgcctgtcgtatggcgttcgctttc 1256

                                                                        
Query: 409  tctattattgcagcaactctcaagtttccactagaggccctagcaggggctctcatggat 468
            |||||||| ||||||||| ||||||| |   | ||| | |||| ||||| ||| || | |
Sbjct: 1255 tctattatggcagcaactttcaagttccttgttgagactctaggaggggttctgattgtt 1196

                                                                    
Query: 469  gtcggttgagcagaacccactggtttcaggtcaaaggtcttgttccttatctgctc 524
            | | | | ||| |||| ||| || |||||||  |||||||||||||||||||||||
Sbjct: 1195 ggctgcttagctgaactcaccggcttcaggttgaaggtcttgttccttatctgctc 1140



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 87   gaacatgcctaccgtctgcagcctttgctgccgggggaggcaagtataca 136
            ||||||| ||||| || |||||||||||||| ||| |||| |||||||||
Sbjct: 1560 gaacatgactaccatcagcagcctttgctgctgggagaggaaagtataca 1511
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                                 
Query: 386      cctgtcgtatggcattcgctttctctattattgcagcaactctcaagtt 434
                ||||||||||||| ||||||||||||||||| ||||||||| |||||||
Sbjct: 33962533 cctgtcgtatggcgttcgctttctctattatggcagcaactttcaagtt 33962485



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 87       gaacatgcctaccgtctgcagcctttgctgccgggggaggcaagtataca 136
                ||||||| ||||| || |||||||||||||| ||| |||| |||||||||
Sbjct: 33962906 gaacatgactaccatcagcagcctttgctgctgggagaggaaagtataca 33962857



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 349      ctccaattatcgtcgtcttcgtcatcgcttcccaccgcctg 389
                |||||||||||  ||||||| || |||||||| ||||||||
Sbjct: 33962661 ctccaattatctccgtcttcatcgtcgcttccaaccgcctg 33962621
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                                 
Query: 386      cctgtcgtatggcattcgctttctctattattgcagcaactctcaagtt 434
                ||||||||||||| ||||||||||||||||| ||||||||| |||||||
Sbjct: 34053005 cctgtcgtatggcgttcgctttctctattatggcagcaactttcaagtt 34052957



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 87       gaacatgcctaccgtctgcagcctttgctgccgggggaggcaagtataca 136
                ||||||| ||||| || |||||||||||||| ||| |||| |||||||||
Sbjct: 34053378 gaacatgactaccatcagcagcctttgctgctgggagaggaaagtataca 34053329



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 349      ctccaattatcgtcgtcttcgtcatcgcttcccaccgcctg 389
                |||||||||||  ||||||| || |||||||| ||||||||
Sbjct: 34053133 ctccaattatctccgtcttcatcgtcgcttccaaccgcctg 34053093
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>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete
             sequence
          Length = 172337

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                              
Query: 386   cctgtcgtatggcattcgctttctctattattgcagcaactctcaagtt 434
             ||||||||||||| ||||||||||||||||| ||||||||| |||||||
Sbjct: 95158 cctgtcgtatggcgttcgctttctctattatggcagcaactttcaagtt 95206



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 87    gaacatgcctaccgtctgcagcctttgctgccgggggaggcaagtataca 136
             ||||||| ||||| || |||||||||||||| ||| |||| |||||||||
Sbjct: 94785 gaacatgactaccatcagcagcctttgctgctgggagaggaaagtataca 94834



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 349   ctccaattatcgtcgtcttcgtcatcgcttcccaccgcctg 389
             |||||||||||  ||||||| || |||||||| ||||||||
Sbjct: 95030 ctccaattatctccgtcttcatcgtcgcttccaaccgcctg 95070
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>ref|NM_126413.1| Arabidopsis thaliana unknown protein AT2G03630 mRNA, complete cds
          Length = 759

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 354 attatcgtcgtcttcgtcatc 374
           |||||||||||||||||||||
Sbjct: 162 attatcgtcgtcttcgtcatc 182
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>ref|XM_755293.1| Ustilago maydis 521 hypothetical protein (UM04239.1) partial mRNA
          Length = 450

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 361 tcgtcttcgtcatcgcttccc 381
           |||||||||||||||||||||
Sbjct: 416 tcgtcttcgtcatcgcttccc 396
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>gb|AC006836.7| Arabidopsis thaliana chromosome 2 clone F19B11 map RNSI, complete
             sequence
          Length = 87543

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 354   attatcgtcgtcttcgtcatc 374
             |||||||||||||||||||||
Sbjct: 24513 attatcgtcgtcttcgtcatc 24533
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>gb|AC074250.6| Homo sapiens BAC clone RP11-622A1 from 4, complete sequence
          Length = 199331

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 144   aggccaaaaagaatggagagaagaa 168
             ||||||||||||||| |||||||||
Sbjct: 37444 aggccaaaaagaatgtagagaagaa 37468
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>dbj|AP006197.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-360J22, complete
            sequence
          Length = 159320

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 239  ataagatggcatgcatggctg 259
            |||||||||||||||||||||
Sbjct: 3341 ataagatggcatgcatggctg 3361
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>dbj|AP006195.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-278C16, complete
             sequence
          Length = 157800

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 239   ataagatggcatgcatggctg 259
             |||||||||||||||||||||
Sbjct: 81646 ataagatggcatgcatggctg 81666
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>dbj|AB041992.1| Homo sapiens genomic DNA, chromosome 6q21, clone:576A9, complete
             sequence
          Length = 112519

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 239   ataagatggcatgcatggctg 259
             |||||||||||||||||||||
Sbjct: 37522 ataagatggcatgcatggctg 37542
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>dbj|AP002529.1| Homo sapiens genomic DNA, chromosome 6q21, anti-oncogene region, section
              2/4
          Length = 300000

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 239    ataagatggcatgcatggctg 259
              |||||||||||||||||||||
Sbjct: 237817 ataagatggcatgcatggctg 237837
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>ref|XM_956633.1| Neurospora crassa OR74A hypothetical protein (NCU07691.1) partial
            mRNA
          Length = 3660

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 358  tcgtcgtcttcgtcatcgct 377
            ||||||||||||||||||||
Sbjct: 1040 tcgtcgtcttcgtcatcgct 1021
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>ref|XM_328396.1| Neurospora crassa OR74A hypothetical protein (NCU07691.1) partial
            mRNA
          Length = 3660

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 358  tcgtcgtcttcgtcatcgct 377
            ||||||||||||||||||||
Sbjct: 1040 tcgtcgtcttcgtcatcgct 1021
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>gb|AC134256.4| Oryza sativa (japonica cultivar-group), complete sequence
          Length = 178233

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 357   atcgtcgtcttcgtcatcgc 376
             ||||||||||||||||||||
Sbjct: 29342 atcgtcgtcttcgtcatcgc 29323
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>gb|AC123057.4| Mus musculus BAC clone RP23-184N6 from 3, complete sequence
          Length = 223068

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 632   gcttatctgtggcgggagcaagct 655
             |||||||||||||||| |||||||
Sbjct: 87052 gcttatctgtggcgggtgcaagct 87075
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>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome
          Length = 241087

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 358  tcgtcgtcttcgtcatcgct 377
            ||||||||||||||||||||
Sbjct: 6015 tcgtcgtcttcgtcatcgct 6034
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>gb|AC157576.4| Mus musculus chromosome 18, clone RP24-252J16, complete sequence
          Length = 164440

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 568   ggagcaagctcttcaacttt 587
             ||||||||||||||||||||
Sbjct: 87099 ggagcaagctcttcaacttt 87080
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>emb|Z75741.1|HS107N3 Human DNA sequence from clone RP1-107N3 on chromosome X Contains a
              kinesin heavy chain member 2 (KIF2) pseudogene and a
              Huntingtin interacting protein K (HYPK) pseudogene,
              complete sequence
          Length = 174045

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 173    aaaaagacataaacatatgggcat 196
              ||||||||||||||| ||||||||
Sbjct: 100325 aaaaagacataaacaaatgggcat 100348
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>emb|AL359208.14| Human DNA sequence from clone RP11-320N6 on chromosome 13, complete
             sequence
          Length = 139649

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 164   aagaatggcaaaaagacataaacatatg 191
             |||||||||  |||||||||||||||||
Sbjct: 93593 aagaatggcttaaagacataaacatatg 93620
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>emb|AL356094.11| Human DNA sequence from clone RP11-64I5 on chromosome 6, complete
              sequence
          Length = 157588

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    aaaagacataaacatatggg 193
              ||||||||||||||||||||
Sbjct: 141114 aaaagacataaacatatggg 141133
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>emb|AL034418.5|HS1049G16 Human DNA sequence from clone RP5-1049G16 on chromosome 20q12-13.2
             Contains the 3' end of the NCOA3 gene for nuclear receptor
             coactivator 3, an RPS3A (ribosomal protein S3A) pseudogene
             and the 3' end of the gene for a novel protein similar to
             glucosamine-6-sulfatases (SULF2) (sulfatase 2, H-SULF2,
             KIAA1247), complete sequence
          Length = 86453

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 618   atcattgggatttggcttatctgt 641
             |||||||||||||||| |||||||
Sbjct: 46826 atcattgggatttggcatatctgt 46849
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>ref|XM_782663.1| PREDICTED: Strongylocentrotus purpuratus similar to G
           protein-coupled receptor 103 (LOC582721), mRNA
          Length = 1719

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 358 tcgtcgtcttcgtcatcgct 377
           ||||||||||||||||||||
Sbjct: 266 tcgtcgtcttcgtcatcgct 285
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>dbj|AB158488.1| Sus scrofa TRIM39, FLJ22638, GNL1, CAT56 genes, SLA-11 pseudogene,
             complete cds
          Length = 147386

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   aaaagaatggagagaagaat 169
             ||||||||||||||||||||
Sbjct: 75792 aaaagaatggagagaagaat 75811
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>gb|AC113405.2| Homo sapiens chromosome 5 clone RP11-467C9, complete sequence
          Length = 134319

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   aagaatggagagaagaatgg 171
             ||||||||||||||||||||
Sbjct: 92638 aagaatggagagaagaatgg 92619
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>emb|BX537342.6| Zebrafish DNA sequence from clone CH211-198P11 in linkage group 3,
             complete sequence
          Length = 195436

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 310   aacaccaggagggcaaaatagctg 333
             |||||||||||| |||||||||||
Sbjct: 30520 aacaccaggaggacaaaatagctg 30543
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 357      atcgtcgtcttcgtcatcgc 376
                ||||||||||||||||||||
Sbjct: 18614962 atcgtcgtcttcgtcatcgc 18614943
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 357     atcgtcgtcttcgtcatcgc 376
               ||||||||||||||||||||
Sbjct: 5113395 atcgtcgtcttcgtcatcgc 5113414
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>gb|AC005517.7|AC005517 Homo sapiens chromosome 17, clone RP11-726O12, complete sequence
          Length = 106210

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   atacacacagcgaggccaaa 151
             ||||||||||||||||||||
Sbjct: 14528 atacacacagcgaggccaaa 14509
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>gb|AC022104.3|AC022104 Homo sapiens chromosome 5 clone CTC-257B12, complete sequence
          Length = 160703

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    aagaatggagagaagaatgg 171
              ||||||||||||||||||||
Sbjct: 126617 aagaatggagagaagaatgg 126636
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>dbj|D29697.1|RICYK9 Oryza sativa mRNA, partial homologous to chalcone synthase gene
          Length = 348

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 357 atcgtcgtcttcgtcatcgc 376
           ||||||||||||||||||||
Sbjct: 117 atcgtcgtcttcgtcatcgc 136
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>dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1147_D11
          Length = 138444

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   atcgtcgtcttcgtcatcgc 376
             ||||||||||||||||||||
Sbjct: 72433 atcgtcgtcttcgtcatcgc 72452
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>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1172G12
          Length = 171974

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 357    atcgtcgtcttcgtcatcgc 376
              ||||||||||||||||||||
Sbjct: 155509 atcgtcgtcttcgtcatcgc 155528
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>emb|BX088527.5| Zebrafish DNA sequence from clone DKEY-200F8 in linkage group 1, complete
              sequence
          Length = 148904

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 49     aacaatttacactagacctgaaca 72
              ||||||||||| ||||||||||||
Sbjct: 134467 aacaatttacaatagacctgaaca 134490
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>dbj|AK108188.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-B11, full
           insert sequence
          Length = 1059

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 357 atcgtcgtcttcgtcatcgc 376
           ||||||||||||||||||||
Sbjct: 190 atcgtcgtcttcgtcatcgc 209
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>dbj|AK067810.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119K06, full
           insert sequence
          Length = 1755

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 357 atcgtcgtcttcgtcatcgc 376
           ||||||||||||||||||||
Sbjct: 122 atcgtcgtcttcgtcatcgc 141
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>emb|CT485668.1| Leptosphaeria maculans : genomic region surrounding the avirulence gene
             AvrLm1 (AM084345)
          Length = 100390

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   acccagtccaagatcttgct 282
             ||||||||||||||||||||
Sbjct: 80649 acccagtccaagatcttgct 80630
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 357      atcgtcgtcttcgtcatcgc 376
                ||||||||||||||||||||
Sbjct: 18774363 atcgtcgtcttcgtcatcgc 18774344
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>gb|AC159826.1| Gallus gallus BAC clone CH261-57J20 from chromosome unknown, complete
              sequence
          Length = 207137

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 446    ccctagcaggggctctcatg 465
              ||||||||||||||||||||
Sbjct: 182871 ccctagcaggggctctcatg 182890
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>gb|AC157662.2| Gallus gallus BAC clone CH261-183P12 from chromosome unknown, complete
             sequence
          Length = 205302

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   ccctagcaggggctctcatg 465
             ||||||||||||||||||||
Sbjct: 59634 ccctagcaggggctctcatg 59653
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>gb|L42357.1|CRARICH Carassius auratus regeneration induced 2',3'-cyclic-nucleotide
            3'-phosphodiesterase homologue (RICH) mRNA, complete cds
          Length = 2660

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 149  aaaaagaatggagagaagaa 168
            ||||||||||||||||||||
Sbjct: 1334 aaaaagaatggagagaagaa 1353
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>gb|M29020.1|CHKOVAL5A Chicken ovalbumin gene, 5' flank
          Length = 5322

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 446  ccctagcaggggctctcatg 465
            ||||||||||||||||||||
Sbjct: 1017 ccctagcaggggctctcatg 1036
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>emb|Z70042.1|HSU96H11 Human DNA sequence from clone LL0XNC01-96H11 on chromosome X, complete
             sequence
          Length = 38168

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 173   aaaaagacataaacatatgggcat 196
             ||||||||||||||| ||||||||
Sbjct: 28200 aaaaagacataaacaaatgggcat 28177
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>dbj|AB000801.2| Oryza sativa mRNA for chalcone synthase, complete cds
          Length = 1782

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 357 atcgtcgtcttcgtcatcgc 376
           ||||||||||||||||||||
Sbjct: 131 atcgtcgtcttcgtcatcgc 150
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>dbj|AB058397.1| Oryza sativa (japonica cultivar-group) CHS gene for chalcone
            synthase, complete cds
          Length = 8072

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 357  atcgtcgtcttcgtcatcgc 376
            ||||||||||||||||||||
Sbjct: 1861 atcgtcgtcttcgtcatcgc 1880


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,559,663
Number of Sequences: 3902068
Number of extensions: 5559663
Number of successful extensions: 98427
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98187
Number of HSP's gapped (non-prelim): 240
length of query: 657
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 634
effective length of database: 17,143,297,704
effective search space: 10868850744336
effective search space used: 10868850744336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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