>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  127 bits (319), Expect(2) = 6e-49
 Identities = 62/62 (100%), Positives = 62/62 (100%)
 Frame = -1

Query: 489 SRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 310
           SRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF
Sbjct: 366 SRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 425

Query: 309 YG 304
           YG
Sbjct: 426 YG 427



 Score = 86.3 bits (212), Expect(2) = 6e-49
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = -3

Query: 256 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 143
           GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF
Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  100 bits (250), Expect(2) = 3e-35
 Identities = 47/62 (75%), Positives = 56/62 (90%)
 Frame = -1

Query: 489 SRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 310
           S++GP +FEQPKMT++KLL YG MLVQEQ+NVKRVQLAD YMS+AALGDAN DA+K G+F
Sbjct: 376 SKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTF 435

Query: 309 YG 304
           YG
Sbjct: 436 YG 437



 Score = 66.6 bits (161), Expect(2) = 3e-35
 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = -3

Query: 259 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 143
           GG+ AQQ G +PVPEGCTD  A NYDPTARSDDGSC+Y F
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score = 98.6 bits (244), Expect(2) = 8e-35
 Identities = 46/62 (74%), Positives = 55/62 (88%)
 Frame = -1

Query: 489 SRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 310
           SR+GP  FEQP+MT EKL+EYG+MLV EQ+NVKRVQLA+TY+SQAALGDAN DA+  G+F
Sbjct: 376 SREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTF 435

Query: 309 YG 304
           YG
Sbjct: 436 YG 437



 Score = 67.8 bits (164), Expect(2) = 8e-35
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -3

Query: 256 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 143
           GKGAQQ  LPVPEGCTD  A+N+DPTARSDDG+C+Y F
Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score = 98.6 bits (244), Expect(2) = 1e-33
 Identities = 45/62 (72%), Positives = 56/62 (90%)
 Frame = -1

Query: 489 SRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 310
           S+DGP  FEQP+MT++KL+EYG+MLVQEQ+NVKRVQLAD YMS AALGDAN+DA+  G+F
Sbjct: 374 SKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTF 433

Query: 309 YG 304
           +G
Sbjct: 434 FG 435



 Score = 63.9 bits (154), Expect(2) = 1e-33
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = -3

Query: 256 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 149
           GK AQQ +LPV +GCTD  AKNYDPTARSDDGSC Y
Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  109 bits (273), Expect = 3e-24
 Identities = 50/62 (80%), Positives = 58/62 (93%)
 Frame = -1

Query: 489 SRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 310
           SR+GP TF+QPKMT+EKL+EYGHMLVQEQ+NVKRVQLAD Y+S+AALG AN DAMKTG+F
Sbjct: 363 SREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAF 422

Query: 309 YG 304
           YG
Sbjct: 423 YG 424

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  108 bits (269), Expect = 1e-23
 Identities = 50/62 (80%), Positives = 58/62 (93%)
 Frame = -1

Query: 489 SRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 310
           S++GP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+S+AALGDAN DAM TG+F
Sbjct: 376 SKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTF 435

Query: 309 YG 304
           YG
Sbjct: 436 YG 437

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  106 bits (265), Expect = 3e-23
 Identities = 49/62 (79%), Positives = 58/62 (93%)
 Frame = -1

Query: 489 SRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 310
           SR+GP  FEQPKMT+EKL+EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN DAMKTGSF
Sbjct: 366 SREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSF 425

Query: 309 YG 304
           YG
Sbjct: 426 YG 427

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  104 bits (259), Expect = 1e-22
 Identities = 47/61 (77%), Positives = 58/61 (95%)
 Frame = -1

Query: 489 SRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 310
           S++GP TFEQPK+T+EKLLEYGHMLV EQ+NVKRVQLAD Y+++AALG+AN+DAMKTGSF
Sbjct: 372 SKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSF 431

Query: 309 Y 307
           +
Sbjct: 432 F 432

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  100 bits (250), Expect = 2e-21
 Identities = 46/60 (76%), Positives = 57/60 (95%)
 Frame = -1

Query: 489 SRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 310
           S++GP TFEQPKMT++KLL+YG+MLV+EQ+NVKRVQLAD YMS+AALGDANQDA+K G+F
Sbjct: 376 SKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  100 bits (249), Expect = 2e-21
 Identities = 48/60 (80%), Positives = 55/60 (91%)
 Frame = -1

Query: 489 SRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 310
           S DGP TFEQPKMTVEKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG+F
Sbjct: 380 SFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score = 99.8 bits (247), Expect = 4e-21
 Identities = 47/58 (81%), Positives = 54/58 (93%)
 Frame = -1

Query: 489 SRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 316
           SRDGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG
Sbjct: 375 SRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score = 99.8 bits (247), Expect = 4e-21
 Identities = 47/61 (77%), Positives = 54/61 (88%)
 Frame = -1

Query: 489 SRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 310
           S DGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+ +AALGDAN DA+  GSF
Sbjct: 380 SFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSF 439

Query: 309 Y 307
           +
Sbjct: 440 F 440

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score = 96.3 bits (238), Expect = 4e-20
 Identities = 42/61 (68%), Positives = 59/61 (96%)
 Frame = -1

Query: 489 SRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 310
           S++GP TF+QPKM+++KLL+YG+MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF
Sbjct: 378 SKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSF 437

Query: 309 Y 307
           +
Sbjct: 438 F 438

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 42/61 (68%), Positives = 56/61 (91%)
 Frame = -1

Query: 489 SRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 310
           S++GP TF+QPKMT++KLL Y  MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF
Sbjct: 380 SKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSF 439

Query: 309 Y 307
           +
Sbjct: 440 F 440

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 27/37 (72%), Positives = 34/37 (91%)
 Frame = -1

Query: 489 SRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 379
           S++ P TF+QPKMT+EKLLEYG+MLV EQ+NVKRV+L
Sbjct: 373 SKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 22/42 (52%), Positives = 28/42 (66%)
 Frame = -1

Query: 474 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAL 349
           V   +  M +  L++YG  LV EQ+NVKRVQLAD Y+S A L
Sbjct: 353 VAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 35.4 bits (80), Expect = 0.084
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 489 SRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTY 367
           S +GP  F++P  T+  L+E  + +V EQ  ++  QL D Y
Sbjct: 249 SLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289

>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)|
           (EF-1AO) (42S p48)
          Length = 461

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
 Frame = -1

Query: 474 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 319
           VTF    +T E K +E  H  +QE         NVK + + D      A    N   M+ 
Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337

Query: 318 GSFYG*KILHTHPPSLAA 265
           GSF    I+  HP  ++A
Sbjct: 338 GSFTAQVIILNHPGQISA 355

>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast (RuBisCO activase) (RA) (Fragments)
          Length = 32

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -1

Query: 486 RDGPVTFEQPKMTVEK 439
           R+GP TFEQP MT+EK
Sbjct: 17  REGPPTFEQPAMTIEK 32

>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
          Length = 1346

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 371 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 475
           + +SC+R TL    T  CP  SS +TVI+ C  ++
Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453

>EF1A_ONCVO (P27592) Elongation factor 1-alpha (EF-1-alpha)|
          Length = 464

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = -1

Query: 474 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 319
           VTF    +T E K +E  H  +QE         NVK + + D      A    N  A +T
Sbjct: 278 VTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKET 337

Query: 318 GSFYG*KILHTHPPSLAA 265
             F    I+  HP  ++A
Sbjct: 338 KMFTAQVIIMNHPGQISA 355

>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)|
          Length = 462

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
 Frame = -1

Query: 474 VTFEQPKMTVE-KLLEYGHMLVQEQD-------NVKRVQLADTYMSQAALGDANQDAMKT 319
           VTF    +T E K +E  H  + E         NVK V + D      A    N   M+ 
Sbjct: 278 VTFAPVNVTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 337

Query: 318 GSFYG*KILHTHPPSLAA 265
           GSF    I+  HP  + A
Sbjct: 338 GSFTAQVIILNHPGQIGA 355

>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor|
           XE12/XE47)
          Length = 658

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -3

Query: 316 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 158
           F L + N    PT   S   GGG G ++ T   P G  D N   +D      DG+
Sbjct: 26  FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80

>EF1A3_XENLA (P17508) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1)|
           (EF-1AO1)
          Length = 461

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = -1

Query: 474 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 319
           VTF    +T E K +E  H  + E         NVK + + D      A    N   M+ 
Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALVEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337

Query: 318 GSFYG*KILHTHPPSLAA 265
           GSF    I+  HP  ++A
Sbjct: 338 GSFTAQVIILNHPGQISA 355


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,564,601
Number of Sequences: 219361
Number of extensions: 1394564
Number of successful extensions: 3705
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3704
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)