ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal3o02 |
|---|---|
| Clone Library Name | barley_pub |
>VACA2_HELPY (Q48245) Vacuolating cytotoxin precursor| Length = 1287 Score = 34.3 bits (77), Expect = 0.27 Identities = 23/74 (31%), Positives = 35/74 (47%) Frame = +2 Query: 11 QHTKSSLSILYLHNKTIVNRHEINPTASYTNTIQLHSTLKNNQQLQSTMHATISHVPCWL 190 +H SSL L L N I+N +N + +TN I S K Q L+ A++ L Sbjct: 951 EHKTSSLQTLSLSNAMILNSRLVNLSRRHTNNID--SFAKRLQALKDQRFASLESAAEVL 1008 Query: 191 TWPSPQLDKPHPLW 232 +P+ +KP +W Sbjct: 1009 YQFAPKYEKPTNVW 1022
>FGFR1_RAT (Q04589) Basic fibroblast growth factor receptor 1 precursor (EC| 2.7.10.1) (FGFR-1) (bFGF-R) (MFR) Length = 822 Score = 33.1 bits (74), Expect = 0.60 Identities = 21/69 (30%), Positives = 29/69 (42%) Frame = +2 Query: 167 ISHVPCWLTWPSPQLDKPHPLWYLPLYININIYVAATLTGSVSVSATVIRKEDTGTTAKI 346 +SH WLT ++P + PLY+ I IY S V + +I K +GT Sbjct: 349 LSHHSAWLTVLEALEERP-AVMTSPLYLEIIIYCTGAFLISCMVGSVIIYKMKSGTKKSD 407 Query: 347 SHPQQTTQK 373 H Q K Sbjct: 408 FHSQMAVHK 416
>VACA_HELPY (P55981) Vacuolating cytotoxin precursor| Length = 1290 Score = 32.7 bits (73), Expect = 0.79 Identities = 22/74 (29%), Positives = 35/74 (47%) Frame = +2 Query: 11 QHTKSSLSILYLHNKTIVNRHEINPTASYTNTIQLHSTLKNNQQLQSTMHATISHVPCWL 190 +H SSL L L N I+N +N + +TN I S + Q L+ A++ L Sbjct: 955 EHKTSSLQTLSLSNAMILNSRLVNLSRRHTNNID--SFAQRLQALKDQKFASLESAAEVL 1012 Query: 191 TWPSPQLDKPHPLW 232 +P+ +KP +W Sbjct: 1013 YQFAPKYEKPTNVW 1026
>FGFR1_HUMAN (P11362) Basic fibroblast growth factor receptor 1 precursor (EC| 2.7.10.1) (FGFR-1) (bFGF-R) (Fms-like tyrosine kinase 2) (c-fgr) (CD331 antigen) Length = 822 Score = 32.7 bits (73), Expect = 0.79 Identities = 20/69 (28%), Positives = 29/69 (42%) Frame = +2 Query: 167 ISHVPCWLTWPSPQLDKPHPLWYLPLYININIYVAATLTGSVSVSATVIRKEDTGTTAKI 346 +SH WLT ++P + PLY+ I IY S V + ++ K +GT Sbjct: 349 LSHHSAWLTVLEALEERP-AVMTSPLYLEIIIYCTGAFLISCMVGSVIVYKMKSGTKKSD 407 Query: 347 SHPQQTTQK 373 H Q K Sbjct: 408 FHSQMAVHK 416
>YFGC_SHIFL (P66949) Hypothetical protein yfgC precursor| Length = 487 Score = 32.0 bits (71), Expect = 1.3 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Frame = +2 Query: 59 IVNRHEINPTASYTNTIQLHSTL----KNNQQLQSTMHATISHV-PCWLTWPSPQLDKPH 223 ++N EIN A + + LHS L N QL S M ISHV L + Sbjct: 98 LINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSA 157 Query: 224 PLWYLPLYININIYVAATLTGSVSVSATVIRKEDTGT-TAKISHPQQTTQKQVMLFINNL 400 PL ++ +I + +A+ G +++ T+ GT IS QQ Q+ + I L Sbjct: 158 PLTWVGALGSILLAMASPQAGMAALTGTL-----AGTRQGMISFTQQNEQEADRIGIQVL 212 Query: 401 KQ 406 ++ Sbjct: 213 QR 214
>YFGC_ECOLI (P66948) Hypothetical protein yfgC precursor| Length = 487 Score = 32.0 bits (71), Expect = 1.3 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Frame = +2 Query: 59 IVNRHEINPTASYTNTIQLHSTL----KNNQQLQSTMHATISHV-PCWLTWPSPQLDKPH 223 ++N EIN A + + LHS L N QL S M ISHV L + Sbjct: 98 LINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSA 157 Query: 224 PLWYLPLYININIYVAATLTGSVSVSATVIRKEDTGT-TAKISHPQQTTQKQVMLFINNL 400 PL ++ +I + +A+ G +++ T+ GT IS QQ Q+ + I L Sbjct: 158 PLTWVGALGSILLAMASPQAGMAALTGTL-----AGTRQGMISFTQQNEQEADRIGIQVL 212 Query: 401 KQ 406 ++ Sbjct: 213 QR 214
>DOPO_MOUSE (Q64237) Dopamine beta-hydroxylase precursor (EC 1.14.17.1)| (Dopamine beta-monooxygenase) Length = 621 Score = 32.0 bits (71), Expect = 1.3 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = +2 Query: 155 MHATISHVPCWLTWPSPQLDKPHPLWYLPLYININIYVAATLTGS 289 M A +SH PCW + PSP + + ++ + I + I VAA L GS Sbjct: 1 MQAHLSHQPCWSSLPSPSVREAASMYGTAVAIFLVILVAA-LRGS 44
>FGFR1_MOUSE (P16092) Basic fibroblast growth factor receptor 1 precursor (EC| 2.7.10.1) (FGFR-1) (bFGF-R) (MFR) Length = 822 Score = 32.0 bits (71), Expect = 1.3 Identities = 20/69 (28%), Positives = 29/69 (42%) Frame = +2 Query: 167 ISHVPCWLTWPSPQLDKPHPLWYLPLYININIYVAATLTGSVSVSATVIRKEDTGTTAKI 346 +SH WLT ++P + PLY+ I IY S + + +I K +GT Sbjct: 349 LSHHSAWLTVLEALEERP-AVMTSPLYLEIIIYCTGAFLISCMLGSVIIYKMKSGTKKSD 407 Query: 347 SHPQQTTQK 373 H Q K Sbjct: 408 FHSQMAVHK 416
>COKA1_HUMAN (Q9P218) Collagen alpha-1(XX) chain precursor| Length = 1329 Score = 31.6 bits (70), Expect = 1.8 Identities = 24/65 (36%), Positives = 28/65 (43%) Frame = -2 Query: 557 LEFSDDDLESDTSEWSTTATSVFGSPPNNTKQRRHTPKRQDVNSWKRELVIVSGYL*TTL 378 L + D SD T ++V SPP+N TP V SW L V Y T Sbjct: 725 LAYYRDGARSDPVSLRYTPSTVSRSPPSNLALASETPDSLQV-SWTPPLGRVLHYWLTYA 783 Query: 377 PASGL 363 PASGL Sbjct: 784 PASGL 788
>YFGC_SALTY (P66950) Hypothetical protein yfgC precursor| Length = 487 Score = 31.6 bits (70), Expect = 1.8 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Frame = +2 Query: 59 IVNRHEINPTASYTNTIQLHSTL----KNNQQLQSTMHATISHV-PCWLTWPSPQLDKPH 223 ++N EIN A + + LHS L N QL S M ISHV L + Sbjct: 98 LINNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQRHLARAMEDQKRSA 157 Query: 224 PLWYLPLYININIYVAATLTGSVSVSATVIRKEDTGT-TAKISHPQQTTQKQVMLFINNL 400 PL ++ +I + +A+ G +++ T+ GT IS QQ Q+ + I L Sbjct: 158 PLTWVGALGSILLAMASPQAGMAALTGTL-----AGTRQGMISFTQQNEQEADRIGIQVL 212 Query: 401 KQ 406 ++ Sbjct: 213 QR 214
>YFGC_SALTI (P66951) Hypothetical protein yfgC precursor| Length = 487 Score = 31.6 bits (70), Expect = 1.8 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Frame = +2 Query: 59 IVNRHEINPTASYTNTIQLHSTL----KNNQQLQSTMHATISHV-PCWLTWPSPQLDKPH 223 ++N EIN A + + LHS L N QL S M ISHV L + Sbjct: 98 LINNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQRHLARAMEDQKRSA 157 Query: 224 PLWYLPLYININIYVAATLTGSVSVSATVIRKEDTGT-TAKISHPQQTTQKQVMLFINNL 400 PL ++ +I + +A+ G +++ T+ GT IS QQ Q+ + I L Sbjct: 158 PLTWVGALGSILLAMASPQAGMAALTGTL-----AGTRQGMISFTQQNEQEADRIGIQVL 212 Query: 401 KQ 406 ++ Sbjct: 213 QR 214
>YFGC_ECO57 (Q8XAD2) Hypothetical protein yfgC precursor| Length = 487 Score = 31.6 bits (70), Expect = 1.8 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Frame = +2 Query: 59 IVNRHEINPTASYTNTIQLHSTL----KNNQQLQSTMHATISHV-PCWLTWPSPQLDKPH 223 ++N EIN A + + LHS L N QL S M ISHV L + Sbjct: 98 LINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRNA 157 Query: 224 PLWYLPLYININIYVAATLTGSVSVSATVIRKEDTGT-TAKISHPQQTTQKQVMLFINNL 400 PL ++ +I + +A+ G +++ T+ GT IS QQ Q+ + I L Sbjct: 158 PLTWVGALGSILLAMASPQAGMAALTGTL-----AGTRQGMISFTQQNEQEADRIGIQVL 212 Query: 401 KQ 406 ++ Sbjct: 213 QR 214
>TRIPC_HUMAN (Q14669) Thyroid receptor-interacting protein 12 (TRIP12)| Length = 1992 Score = 30.4 bits (67), Expect = 3.9 Identities = 20/65 (30%), Positives = 33/65 (50%) Frame = +2 Query: 41 YLHNKTIVNRHEINPTASYTNTIQLHSTLKNNQQLQSTMHATISHVPCWLTWPSPQLDKP 220 YL++ + EI PT+ + N+ T K N+QLQ + ++P WLT +L K Sbjct: 1487 YLYDNAMCK--EIIPTSEFINS---KLTAKANRQLQDPLVIMTGNIPTWLT----ELGKT 1537 Query: 221 HPLWY 235 P ++ Sbjct: 1538 CPFFF 1542
>GATA2_ARATH (O49741) GATA transcription factor 2 (AtGATA-2)| Length = 264 Score = 30.0 bits (66), Expect = 5.1 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Frame = -2 Query: 557 LEFSDDDLESDTSEWSTTA---TSVFGSPPNNTKQRRHTPKRQDVNSWKRELVIVS 399 L+FS++D+ S +S +TA +S F P N + H P D +S+ ++ + S Sbjct: 18 LDFSNEDIFSASSSGGSTAATSSSSFPPPQNPSFHHHHLPSSADHHSFLHDICVPS 73
>DPOL_CBEPV (P30319) DNA polymerase (EC 2.7.7.7)| Length = 964 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = +1 Query: 76 NKPNS*LHKYYTAALYSQKQSTVTIN 153 NK N L+ YYT+ALYS+K +TIN Sbjct: 650 NKNNPVLYNYYTSALYSKK---ITIN 672
>CP392_DROME (P82713) Probable cytochrome P450 309a2 (EC 1.14.-.-) (CYPCCCIXA2)| Length = 538 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = +3 Query: 36 SCTYTTKQLSIAMK*TQQLVTQILYSCTLLSKTINSYNQLCTQPS 170 SC + K L + Q + Q++Y LS I Y ++CT P+ Sbjct: 372 SCMASEKSLDFEKLSSLQYLEQVIYESLRLSSLIPQYTKVCTLPT 416
>ASF2_YEAST (P32448) Anti-silencing protein 2| Length = 525 Score = 29.3 bits (64), Expect = 8.7 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 9/89 (10%) Frame = +1 Query: 37 LVLTQQNNCQSP*NKPNS*LHKYYTAALYSQKQSTVTINYA--RNHLTR---PLLVNLAF 201 L+L+Q +N Q N P L YS+K +T+ ++Y+ +++L+R P + NL Sbjct: 402 LLLSQHSNHQEIDNTPQRLLLAAPDGQSYSEKSTTLNLDYSSRKSYLSRLQPPHIANLKS 461 Query: 202 ATIR--QTTPTMVP--PSLHQHQHICSSD 276 T++ PT P PS + Q D Sbjct: 462 LTLKTLPRVPTDSPQLPSKDKSQETAKKD 490
>Y3069_YERPE (Q8ZCC3) Hypothetical protein YPO3069/y1412/YP2691 precursor| Length = 486 Score = 29.3 bits (64), Expect = 8.7 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 5/89 (5%) Frame = +2 Query: 59 IVNRHEINPTASYTNTIQLHSTL----KNNQQLQSTMHATISHV-PCWLTWPSPQLDKPH 223 +VN +IN A + + LHS L N +L S + ISHV L + + Sbjct: 96 LVNNDQINAFAFFGGNVVLHSALFRYTDNESELASVLAHEISHVTQRHLARAMEEQQRLA 155 Query: 224 PLWYLPLYININIYVAATLTGSVSVSATV 310 PL ++ + +I + +A+ G +S T+ Sbjct: 156 PLTWVGVLGSILLTMASPQAGMAGLSGTL 184
>G168_PARPR (P17053) G surface protein, allelic form 168 precursor| Length = 2704 Score = 29.3 bits (64), Expect = 8.7 Identities = 14/31 (45%), Positives = 15/31 (48%) Frame = -1 Query: 234 YHSGCGLSNCGEGQVNQQGTCEMVACIVDCN 142 YHS C LSN G G V CE + CN Sbjct: 539 YHSTCTLSNSGTGCVPLPLKCEAITIEAACN 569
>G156_PARPR (P13837) G surface protein, allelic form 156 precursor| Length = 2715 Score = 29.3 bits (64), Expect = 8.7 Identities = 14/31 (45%), Positives = 15/31 (48%) Frame = -1 Query: 234 YHSGCGLSNCGEGQVNQQGTCEMVACIVDCN 142 YHS C LSN G G V CE + CN Sbjct: 545 YHSTCTLSNSGTGCVPLPLKCEAITIEAACN 575
>NFKB1_CHICK (Q04861) Nuclear factor NF-kappa-B p105 subunit [Contains: Nuclear| factor NF-kappa-B p50 subunit] Length = 984 Score = 29.3 bits (64), Expect = 8.7 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +2 Query: 29 LSILYLHNKTIVNRHEINPTASYTNTIQLHSTL 127 LSI++LH + + N E+ P +Y N I + + L Sbjct: 547 LSIIHLHRELVKNLLEVMPDMNYNNIINMRNDL 579
>SQV3_CAEEL (P34548) Probable galactosyltransferase sqv-3 (EC 2.4.1.-)| (Squashed vulva protein 3) Length = 289 Score = 29.3 bits (64), Expect = 8.7 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Frame = -2 Query: 578 VRDETAHLEFSDDDLE-SDTSEWSTTATSVFGSPPNNTKQRRHTPKRQDVNSW--KRELV 408 + D+ +L D L + S ST +++ F ++R +TPK+ D N W KR+ Sbjct: 186 LEDDEFYLRIIDSKLNLTRVSGLSTDSSNTFRHIHGPKRKRDYTPKKNDKNQWEIKRKRD 245 Query: 407 IVSG 396 VSG Sbjct: 246 HVSG 249
>DHX15_SCHPO (O42945) Probable pre-mRNA-splicing factor ATP-dependent RNA| helicase prp43 (EC 3.6.1.-) Length = 735 Score = 29.3 bits (64), Expect = 8.7 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Frame = -2 Query: 578 VRDETAHLEFSDDDLESDTSEWSTTATSVFGSPPNNTKQRRHTPKRQDVNS-WKRELVIV 402 + D + DDL + + ++GS P N +QR P +D S + R++VI Sbjct: 298 IEDACRKITLEADDLVREGAAGPLKVYPLYGSLPPNQQQRIFEPTPEDTKSGYGRKVVIS 357 Query: 401 SGYL*TTLPASGL 363 + T+L G+ Sbjct: 358 TNIAETSLTIDGI 370 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,537,222 Number of Sequences: 219361 Number of extensions: 1749611 Number of successful extensions: 5256 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4987 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5251 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
