ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal3n19 |
|---|---|
| Clone Library Name | barley_pub |
>KPPR_WHEAT (P26302) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 404 Score = 153 bits (387), Expect(3) = 5e-63 Identities = 76/76 (100%), Positives = 76/76 (100%) Frame = -2 Query: 507 GQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTI 328 GQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTI Sbjct: 319 GQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTI 378 Query: 327 VGLKIRDLYEQIIAER 280 VGLKIRDLYEQIIAER Sbjct: 379 VGLKIRDLYEQIIAER 394 Score = 87.4 bits (215), Expect(3) = 5e-63 Identities = 37/37 (100%), Positives = 37/37 (100%) Frame = -1 Query: 616 VYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFG 506 VYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFG Sbjct: 283 VYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFG 319 Score = 41.6 bits (96), Expect(3) = 5e-63 Identities = 18/20 (90%), Positives = 20/20 (100%) Frame = -3 Query: 677 KGKVLRVKLIMKEGVKFFNP 618 +GKVLRVKLIMKEG+KFFNP Sbjct: 263 EGKVLRVKLIMKEGIKFFNP 282
>KPPR_ARATH (P25697) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 395 Score = 145 bits (366), Expect(3) = 2e-56 Identities = 71/74 (95%), Positives = 73/74 (98%) Frame = -2 Query: 501 EVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVG 322 EVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVG Sbjct: 313 EVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVG 372 Query: 321 LKIRDLYEQIIAER 280 LKIRDLYEQ+IA + Sbjct: 373 LKIRDLYEQLIANK 386 Score = 77.4 bits (189), Expect(3) = 2e-56 Identities = 32/36 (88%), Positives = 35/36 (97%) Frame = -1 Query: 616 VYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYF 509 VYLFDEGSTI+WIPCGRKLTCSYPGIKF+Y PD+YF Sbjct: 275 VYLFDEGSTISWIPCGRKLTCSYPGIKFNYEPDSYF 310 Score = 37.7 bits (86), Expect(3) = 2e-56 Identities = 16/20 (80%), Positives = 20/20 (100%) Frame = -3 Query: 677 KGKVLRVKLIMKEGVKFFNP 618 +GKVLRV+LIMKEGVK+F+P Sbjct: 255 EGKVLRVRLIMKEGVKYFSP 274
>KPPR_MESCR (P27774) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 397 Score = 143 bits (360), Expect(3) = 7e-56 Identities = 69/76 (90%), Positives = 73/76 (96%) Frame = -2 Query: 507 GQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTI 328 G EV+VLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKH DFPGSNNGTGLFQTI Sbjct: 312 GNEVTVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQDFPGSNNGTGLFQTI 371 Query: 327 VGLKIRDLYEQIIAER 280 VGLKIRDL+EQ+IA + Sbjct: 372 VGLKIRDLFEQLIASK 387 Score = 81.3 bits (199), Expect(3) = 7e-56 Identities = 34/37 (91%), Positives = 35/37 (94%) Frame = -1 Query: 616 VYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFG 506 VYLFDEGS+I WIPCGRKLTCSYPGIKF YGPDTYFG Sbjct: 276 VYLFDEGSSITWIPCGRKLTCSYPGIKFFYGPDTYFG 312 Score = 34.3 bits (77), Expect(3) = 7e-56 Identities = 14/20 (70%), Positives = 19/20 (95%) Frame = -3 Query: 677 KGKVLRVKLIMKEGVKFFNP 618 +GKVLRV+LI KEGV++F+P Sbjct: 256 EGKVLRVRLIQKEGVQYFSP 275
>KPPR_SPIOL (P09559) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 402 Score = 137 bits (344), Expect(3) = 1e-55 Identities = 64/76 (84%), Positives = 71/76 (93%) Frame = -2 Query: 507 GQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTI 328 G EV+V+EMDG FDRLDELIYVESHLSNLSTKFYGEVTQQMLKH +FPGSNNGTG FQTI Sbjct: 317 GNEVTVVEMDGMFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQNFPGSNNGTGFFQTI 376 Query: 327 VGLKIRDLYEQIIAER 280 +GLKIRDL+EQ++A R Sbjct: 377 IGLKIRDLFEQLVASR 392 Score = 82.8 bits (203), Expect(3) = 1e-55 Identities = 34/37 (91%), Positives = 37/37 (100%) Frame = -1 Query: 616 VYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFG 506 VYLFDEGSTI+WIPCGRKLTCSYPGIKFSYGPDT++G Sbjct: 281 VYLFDEGSTISWIPCGRKLTCSYPGIKFSYGPDTFYG 317 Score = 38.1 bits (87), Expect(3) = 1e-55 Identities = 16/20 (80%), Positives = 19/20 (95%) Frame = -3 Query: 677 KGKVLRVKLIMKEGVKFFNP 618 +GKVLRV++I KEGVKFFNP Sbjct: 261 EGKVLRVRMIQKEGVKFFNP 280
>KPPR_CHLRE (P19824) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 375 Score = 129 bits (325), Expect(3) = 8e-50 Identities = 60/73 (82%), Positives = 70/73 (95%) Frame = -2 Query: 507 GQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTI 328 GQEVSVLEMDGQFD+L+ELIYVESHLSN S KFYGE+TQQMLK++ FPGSNNGTGLFQTI Sbjct: 296 GQEVSVLEMDGQFDKLEELIYVESHLSNTSAKFYGEITQQMLKNSGFPGSNNGTGLFQTI 355 Query: 327 VGLKIRDLYEQII 289 VGLK+R++YE+I+ Sbjct: 356 VGLKVREVYERIV 368 Score = 76.3 bits (186), Expect(3) = 8e-50 Identities = 31/37 (83%), Positives = 35/37 (94%) Frame = -1 Query: 616 VYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFG 506 VYLFDEGSTI+WIPCGRKLTCS+PGIK YGPDT++G Sbjct: 260 VYLFDEGSTISWIPCGRKLTCSFPGIKMFYGPDTWYG 296 Score = 32.3 bits (72), Expect(3) = 8e-50 Identities = 14/20 (70%), Positives = 17/20 (85%) Frame = -3 Query: 677 KGKVLRVKLIMKEGVKFFNP 618 KG+ LRV+LIMKEG K F+P Sbjct: 240 KGQYLRVRLIMKEGSKMFDP 259
>KPPR_SYNY3 (P37101) Phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase)| (PRKase) (PRK) Length = 332 Score = 108 bits (270), Expect(3) = 1e-41 Identities = 46/75 (61%), Positives = 65/75 (86%) Frame = -2 Query: 507 GQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTI 328 G EVS+LE+DG+F+ L+E++YVE+HLS TK+YGE+T+ +LKH D+PG++NGTGLFQ + Sbjct: 251 GNEVSLLEVDGRFENLEEMVYVENHLSKTGTKYYGEMTELLLKHKDYPGTDNGTGLFQVL 310 Query: 327 VGLKIRDLYEQIIAE 283 VGLK+R +YEQ+ AE Sbjct: 311 VGLKMRKVYEQLTAE 325 Score = 69.7 bits (169), Expect(3) = 1e-41 Identities = 28/36 (77%), Positives = 31/36 (86%) Frame = -1 Query: 613 YLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFG 506 YLFDEGSTI+W PCGRKLTC+YPGIK YGPD + G Sbjct: 216 YLFDEGSTIDWRPCGRKLTCTYPGIKMYYGPDNFMG 251 Score = 32.7 bits (73), Expect(3) = 1e-41 Identities = 13/20 (65%), Positives = 17/20 (85%) Frame = -3 Query: 677 KGKVLRVKLIMKEGVKFFNP 618 + K+LRV+L+ KEGVKFF P Sbjct: 195 ESKLLRVRLVQKEGVKFFEP 214
>CARB_SULAC (Q4J8E8) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1052 Score = 32.3 bits (72), Expect = 1.4 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Frame = +2 Query: 77 HGEDFREVQNAGFHEFCSELSTVF*L*YIQTSHKKREDAHSH*VGDEMIHELEFGAHQTF 256 +G V+ AG H + +S F +T HK +E HS + E+ + F F Sbjct: 769 YGVVLEHVEEAGVHSGDATISIPFKKLSPETVHKMKESIHS--ISRELNIKGPFNVQ--F 824 Query: 257 AASAGTPALSAM-ICS*RSLIFSPTIVWKRPVPLLLPG 367 GTP + M + + RS+ FS +V K + L L G Sbjct: 825 VVKNGTPYIIEMNLRASRSMPFSSKVVGKNIIDLALTG 862
>PALFB_EUGGR (P84737) Photoactivated adenylate cyclase alpha-subunit-like| protein FB Length = 1019 Score = 30.4 bits (67), Expect = 5.3 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +1 Query: 268 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 375 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVLLATDICSFTPLSEKCSLTEVWTIC 640
>GCSP_ARATH (O80988) Glycine dehydrogenase [decarboxylating], mitochondrial| precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 1044 Score = 30.4 bits (67), Expect = 5.3 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 7/115 (6%) Frame = -2 Query: 642 RRR*VLQPGFTSSMKDQPSTGSLVEESLHALTLASNFPMAQTLTSGQEVSVLEMDGQFDR 463 RRR V FT+S ++Q T S+ S+ AL + FP + E + + FD Sbjct: 51 RRRDVSGSAFTTSGRNQHQTRSI---SVDALKPSDTFPRRHNSATPDEQAQMANYCGFDN 107 Query: 462 LDELI--YVESHLSNLSTKFYGEVTQ-----QMLKHADFPGSNNGTGLFQTIVGL 319 L+ LI V + S KF G + QM++H S N +F++ +G+ Sbjct: 108 LNTLIDSTVPKSIRLDSMKFSGIFDEGLTESQMIEHMSDLASKN--KVFKSFIGM 160
>MATK_PINCE (Q6BDJ4) Maturase K (Intron maturase)| Length = 515 Score = 30.0 bits (66), Expect = 7.0 Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 4/101 (3%) Frame = -2 Query: 585 TGSLVEESLHALTLASNFPMAQTLTSGQE--VSVLEMDGQFDRLDELIYVESHLSNL--S 418 +GS + L+ + + A+TL + + V+ + + L ++++ + +L S Sbjct: 415 SGSFGRDGLYRIKYILSLSCAKTLACKHKSTIRVVRKELGPELLSKIVFKRTRFDSLPFS 474 Query: 417 TKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQ 295 +K ++ + H+D P N +Q I LKI +L++Q Sbjct: 475 SKAAARSQRERIWHSDIPQINPLVNSWQKIQDLKIENLFDQ 515
>PCYAA_EUGGR (Q8S9F2) Photoactivated adenylate cyclase subunit alpha (EC| 4.6.1.1) (Photoactivated adenylyl cyclase alpha subunit) Length = 1019 Score = 30.0 bits (66), Expect = 7.0 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +1 Query: 268 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 375 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSEKCSLTEVWTIC 640
>PCYAA_ASTLO (Q76L34) Photoactivated adenylate cyclase subunit alpha (EC| 4.6.1.1) (Photoactivated adenylyl cyclase alpha subunit) Length = 1019 Score = 30.0 bits (66), Expect = 7.0 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +1 Query: 268 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 375 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSERCSLTEVWTIC 640
>PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subunit-like| protein ST- Length = 1019 Score = 30.0 bits (66), Expect = 7.0 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +1 Query: 268 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 375 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSEKCSLTEVWTIC 640
>PAL1F_EUGGR (P84738) Photoactivated adenylate cyclase alpha-subunit-like| protein 1224-5/1F Length = 1019 Score = 30.0 bits (66), Expect = 7.0 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = +1 Query: 268 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 375 RN P+S ++ + + + S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATAISSFTPLSEKCSLTEVWTIC 640
>MURD_STRR6 (Q8DQM2) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 450 Score = 30.0 bits (66), Expect = 7.0 Identities = 27/90 (30%), Positives = 40/90 (44%) Frame = -2 Query: 552 LTLASNFPMAQTLTSGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHA 373 L L N +A+ LTS E +V+ +++D ++L + F GEV Sbjct: 220 LVLNFNQDLAKDLTSKTEATVVPFS-TLEKVDG-----AYLEDGQLYFRGEVVMAA-NEI 272 Query: 372 DFPGSNNGTGLFQTIVGLKIRDLYEQIIAE 283 PGS+N TI K+RD+ Q I E Sbjct: 273 GVPGSHNVENALATIAVAKLRDVDNQTIKE 302
>MURD_STRPN (Q97RU8) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 450 Score = 30.0 bits (66), Expect = 7.0 Identities = 27/90 (30%), Positives = 40/90 (44%) Frame = -2 Query: 552 LTLASNFPMAQTLTSGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHA 373 L L N +A+ LTS E +V+ +++D ++L + F GEV Sbjct: 220 LVLNFNQDLAKDLTSKTEATVVPFS-TLEKVDG-----AYLEDGQLYFRGEVVMAA-NEI 272 Query: 372 DFPGSNNGTGLFQTIVGLKIRDLYEQIIAE 283 PGS+N TI K+RD+ Q I E Sbjct: 273 GVPGSHNVENALATIAVAKLRDVDNQTIKE 302 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,996,076 Number of Sequences: 219361 Number of extensions: 2030598 Number of successful extensions: 5450 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5240 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5449 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6882837918 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
