ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_792787.1| PREDICTED: Strongylocentrotus purpuratus simila... 44 0.56
2emb|AL606607.3|OSJN00068 Oryza sativa genomic DNA, chromosome 4,... 44 0.56
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
6dbj|AP007254.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
7dbj|AP006584.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
8dbj|AP006525.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
9gb|AC122405.4| Mus musculus BAC clone RP24-119O6 from chromosome... 42 2.2
10ref|XM_759369.1| Theileria parva strain Muguga chromosome 4 hypo... 42 2.2
11gb|AC150786.21| Medicago truncatula clone mth2-170o9, complete s... 42 2.2
12emb|AL356269.10| Human DNA sequence from clone RP11-420J12 on ch... 42 2.2
13gb|AC079414.6| Homo sapiens chromosome 16 clone RP11-358L22, com... 42 2.2
14gb|AC009044.3|AC009044 Homo sapiens chromosome 16 clone RP11-190... 42 2.2
15dbj|AP005860.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
16emb|AL929452.9| Mouse DNA sequence from clone RP23-345L15 on chr... 42 2.2
17gb|U51244.1|U51244 Homo sapiens BAC clone 1D9 from 2p21, complet... 42 2.2
18gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 42 2.2
19ref|XM_588438.2| PREDICTED: Bos taurus similar to TRAF2 and NCK ... 40 8.7
20gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.7
21gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic ... 40 8.7
22emb|CT010515.8| M.truncatula DNA sequence from clone MTH2-146B21... 40 8.7
23ref|XM_568826.1| Cryptococcus neoformans var. neoformans JEC21 t... 40 8.7
24gb|AC148347.13| Medicago truncatula clone mth2-26g24, complete s... 40 8.7
25gb|AC153125.10| Medicago truncatula clone mth2-74f16, complete s... 40 8.7
26gb|AC148291.22| Medicago truncatula clone mth2-14n3, complete se... 40 8.7
27gb|AC140550.31| Medicago truncatula clone mth2-54a24, complete s... 40 8.7
28gb|AC150205.5| Medicago truncatula clone mth2-72l17, complete se... 40 8.7
29gb|AC127019.29| Medicago truncatula clone mth2-31b1, complete se... 40 8.7
30emb|AL121827.34|HSA261N11 Human DNA sequence from clone RP11-261... 40 8.7
31gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 8.7
32gb|DQ093071.1| Homo sapiens cholinergic receptor, nicotinic, alp... 40 8.7
33gb|AC151673.24| Medicago truncatula clone mth2-2k12, complete se... 40 8.7
34gb|AC148525.14| Medicago truncatula clone mth2-24i13, complete s... 40 8.7
35gb|AF083031.2|AF083031 Guillardia theta nucleomorph chromosome 3... 40 8.7
36gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genom... 40 8.7
37emb|AL113886.1|CNS01B7Q Botrytis cinerea strain T4 cDNA library 40 8.7
38dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
39dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
40dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
41gb|AC009499.4| Homo sapiens BAC clone RP11-510D10 from 2, comple... 40 8.7
42gb|AC073066.5| Homo sapiens BAC clone RP11-149P12 from 2, comple... 40 8.7
43dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
44dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
45dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
46dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
47dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
48emb|CT030245.8| M.truncatula DNA sequence from clone MTH2-59B18 ... 40 8.7
49emb|CR956402.15| M.truncatula DNA sequence from clone MTH2-50J5 ... 40 8.7 
>ref|XM_792787.1| PREDICTED: Strongylocentrotus purpuratus similar to inositol
            1,4,5-triphosphate receptor, type 1 (LOC593307), partial
            mRNA
          Length = 1932

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 544  gctgttgccatggaggatgaag 565
            ||||||||||||||||||||||
Sbjct: 1309 gctgttgccatggaggatgaag 1330



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 544  gctgttgccatggaggatgaag 565
            ||||||||||||||||||||||
Sbjct: 1195 gctgttgccatggaggatgaag 1216
to top
>emb|AL606607.3|OSJN00068 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0065L13,
             complete sequence
          Length = 103039

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 178   gtaatactccctttatttcaaaatac 203
             ||||||||||||| ||||||||||||
Sbjct: 58729 gtaatactcccttcatttcaaaatac 58754
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 178      gtaatactccctttatttcaaaatac 203
                ||||||||||||| ||||||||||||
Sbjct: 25481236 gtaatactcccttcatttcaaaatac 25481261
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 181      atactccctttatttcaaaata 202
                ||||||||||||||||||||||
Sbjct: 19962474 atactccctttatttcaaaata 19962453



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 508     gagcagcatatgaacatgata 528
               |||||||||||||||||||||
Sbjct: 1091177 gagcagcatatgaacatgata 1091157



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 180     aatactccctttatttcaaaatac 203
               |||||||||| |||||||||||||
Sbjct: 8588879 aatactccctctatttcaaaatac 8588902
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 244      cgacaagtattttagaacggat 265
                ||||||||||||||||||||||
Sbjct: 10411200 cgacaagtattttagaacggat 10411221
to top
>dbj|AP007254.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
             fosmid clone:OSJNOa211K08
          Length = 41043

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 181   atactccctttatttcaaaata 202
             ||||||||||||||||||||||
Sbjct: 19113 atactccctttatttcaaaata 19092
to top
>dbj|AP006584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1197G05
          Length = 130823

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 244    cgacaagtattttagaacggat 265
              ||||||||||||||||||||||
Sbjct: 118737 cgacaagtattttagaacggat 118758
to top
>dbj|AP006525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0498F03
          Length = 54025

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 181   atactccctttatttcaaaata 202
             ||||||||||||||||||||||
Sbjct: 36622 atactccctttatttcaaaata 36601
to top
>gb|AC122405.4| Mus musculus BAC clone RP24-119O6 from chromosome 12, complete sequence
          Length = 196285

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 213    taccatgacaagtatttttgt 233
              |||||||||||||||||||||
Sbjct: 149294 taccatgacaagtatttttgt 149314
to top
>ref|XM_759369.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
            (TP04_0825) partial mRNA
          Length = 3177

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 136  tgtaatgataaaccttttgag 156
            |||||||||||||||||||||
Sbjct: 1384 tgtaatgataaaccttttgag 1404
to top
>gb|AC150786.21| Medicago truncatula clone mth2-170o9, complete sequence
          Length = 142649

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 179    taatactccctttatttcaaaatac 203
              |||||||||||| ||||||||||||
Sbjct: 134738 taatactcccttcatttcaaaatac 134714
to top
>emb|AL356269.10| Human DNA sequence from clone RP11-420J12 on chromosome 13, complete
             sequence
          Length = 141895

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 450   cctctctccctgttgttttccctcc 474
             |||||||||||||||||||| ||||
Sbjct: 38986 cctctctccctgttgttttctctcc 39010
to top
>gb|AC079414.6| Homo sapiens chromosome 16 clone RP11-358L22, complete sequence
          Length = 167015

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 118   gtgtaatagtagcttgcttgtaatg 142
             |||||||||||||||||| ||||||
Sbjct: 50535 gtgtaatagtagcttgctggtaatg 50511
to top
>gb|AC009044.3|AC009044 Homo sapiens chromosome 16 clone RP11-190D6, complete sequence
          Length = 167195

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 118    gtgtaatagtagcttgcttgtaatg 142
              |||||||||||||||||| ||||||
Sbjct: 132425 gtgtaatagtagcttgctggtaatg 132401
to top
>dbj|AP005860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1134_E08
          Length = 153002

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 508    gagcagcatatgaacatgata 528
              |||||||||||||||||||||
Sbjct: 128870 gagcagcatatgaacatgata 128850
to top
>emb|AL929452.9| Mouse DNA sequence from clone RP23-345L15 on chromosome X, complete
             sequence
          Length = 221920

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 68    agagagccctagaagatatat 88
             |||||||||||||||||||||
Sbjct: 53724 agagagccctagaagatatat 53744
to top
>gb|U51244.1|U51244 Homo sapiens BAC clone 1D9 from 2p21, complete sequence
          Length = 67571

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 498   gcatggcagggagcagcatat 518
             |||||||||||||||||||||
Sbjct: 65248 gcatggcagggagcagcatat 65268
to top
>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 22     gaattggtacattagatgaat 42
              |||||||||||||||||||||
Sbjct: 933259 gaattggtacattagatgaat 933239
to top
>ref|XM_588438.2| PREDICTED: Bos taurus similar to TRAF2 and NCK interacting kinase
           (LOC539627), mRNA
          Length = 5942

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 553 atggaggatgaagaggaaga 572
           ||||||||||||||||||||
Sbjct: 247 atggaggatgaagaggaaga 266
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 179      taatactccctttatttcaaaatacttg 206
                ||||||||||||| ||||||| ||||||
Sbjct: 33396684 taatactccctttgtttcaaattacttg 33396657



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 180      aatactccctttatttcaaaatac 203
                |||||||||| |||||||||||||
Sbjct: 21304808 aatactccctctatttcaaaatac 21304831
to top
>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete
              sequence
          Length = 174910

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 180    aatactccctttatttcaaaatac 203
              |||||||||| |||||||||||||
Sbjct: 160723 aatactccctctatttcaaaatac 160746
to top
>emb|CT010515.8| M.truncatula DNA sequence from clone MTH2-146B21 on chromosome 3,
              complete sequence
          Length = 130617

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 360    gttgggaagaggctgctgca 379
              ||||||||||||||||||||
Sbjct: 125675 gttgggaagaggctgctgca 125656
to top
>ref|XM_568826.1| Cryptococcus neoformans var. neoformans JEC21 tubulin binding protein
            (CNB01560) partial mRNA
          Length = 6369

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 581  ttctccacgatcttctcaac 600
            ||||||||||||||||||||
Sbjct: 3260 ttctccacgatcttctcaac 3241
to top
>gb|AC148347.13| Medicago truncatula clone mth2-26g24, complete sequence
          Length = 114712

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 360    gttgggaagaggctgctgca 379
              ||||||||||||||||||||
Sbjct: 107091 gttgggaagaggctgctgca 107110



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 360    gttgggaagaggctgctgca 379
              ||||||||||||||||||||
Sbjct: 101976 gttgggaagaggctgctgca 101995



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 360    gttgggaagaggctgctgca 379
              ||||||||||||||||||||
Sbjct: 101881 gttgggaagaggctgctgca 101900
to top
>gb|AC153125.10| Medicago truncatula clone mth2-74f16, complete sequence
          Length = 128458

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   gttgggaagaggctgctgca 379
             ||||||||||||||||||||
Sbjct: 82261 gttgggaagaggctgctgca 82242
to top
>gb|AC148291.22| Medicago truncatula clone mth2-14n3, complete sequence
          Length = 138853

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  gttgggaagaggctgctgca 379
            ||||||||||||||||||||
Sbjct: 1963 gttgggaagaggctgctgca 1982
to top
>gb|AC140550.31| Medicago truncatula clone mth2-54a24, complete sequence
          Length = 129388

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 270    agtactaatactaattggagtgct 293
              |||||||||||||||| |||||||
Sbjct: 129022 agtactaatactaattagagtgct 129045
to top
>gb|AC150205.5| Medicago truncatula clone mth2-72l17, complete sequence
          Length = 130555

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   gttgggaagaggctgctgca 379
             ||||||||||||||||||||
Sbjct: 18616 gttgggaagaggctgctgca 18597
to top
>gb|AC127019.29| Medicago truncatula clone mth2-31b1, complete sequence
          Length = 122810

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   gttgggaagaggctgctgca 379
             ||||||||||||||||||||
Sbjct: 30538 gttgggaagaggctgctgca 30519



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   gttgggaagaggctgctgca 379
             ||||||||||||||||||||
Sbjct: 25423 gttgggaagaggctgctgca 25404
to top
>emb|AL121827.34|HSA261N11 Human DNA sequence from clone RP11-261N11 on chromosome 20, complete
              sequence
          Length = 184223

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    ttgggaagaggctgctgcag 380
              ||||||||||||||||||||
Sbjct: 118997 ttgggaagaggctgctgcag 119016
to top
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete
              sequence
          Length = 1632307

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 581    ttctccacgatcttctcaac 600
              ||||||||||||||||||||
Sbjct: 464085 ttctccacgatcttctcaac 464066
to top
>gb|DQ093071.1| Homo sapiens cholinergic receptor, nicotinic, alpha polypeptide 4
             (CHRNA4) gene, complete cds
          Length = 20632

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 361   ttgggaagaggctgctgcag 380
             ||||||||||||||||||||
Sbjct: 13865 ttgggaagaggctgctgcag 13846
to top
>gb|AC151673.24| Medicago truncatula clone mth2-2k12, complete sequence
          Length = 125859

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   gttgggaagaggctgctgca 379
             ||||||||||||||||||||
Sbjct: 50520 gttgggaagaggctgctgca 50501
to top
>gb|AC148525.14| Medicago truncatula clone mth2-24i13, complete sequence
          Length = 94953

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   gttgggaagaggctgctgca 379
             ||||||||||||||||||||
Sbjct: 64844 gttgggaagaggctgctgca 64825



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   gttgggaagaggctgctgca 379
             ||||||||||||||||||||
Sbjct: 64749 gttgggaagaggctgctgca 64730



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   gttgggaagaggctgctgca 379
             ||||||||||||||||||||
Sbjct: 59634 gttgggaagaggctgctgca 59615
to top
>gb|AF083031.2|AF083031 Guillardia theta nucleomorph chromosome 3, complete sequence
          Length = 174133

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   ttgcttgtaatgataaacct 150
             ||||||||||||||||||||
Sbjct: 28252 ttgcttgtaatgataaacct 28271
to top
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
              sequence
          Length = 154555

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 179    taatactccctttatttcaaaatacttg 206
              ||||||||||||| ||||||| ||||||
Sbjct: 101427 taatactccctttgtttcaaattacttg 101454
to top
>emb|AL113886.1|CNS01B7Q Botrytis cinerea strain T4 cDNA library
          Length = 720

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 578 ccattctccacgatcttctc 597
           ||||||||||||||||||||
Sbjct: 620 ccattctccacgatcttctc 639
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 179      taatactccctttatttcaaaatacttg 206
                ||||||||||||| ||||||| ||||||
Sbjct: 33487194 taatactccctttgtttcaaattacttg 33487167



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 180      aatactccctttatttcaaaatac 203
                |||||||||| |||||||||||||
Sbjct: 21297837 aatactccctctatttcaaaatac 21297860
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 243     acgacaagtattttagaacggata 266
               |||||||||||||||| |||||||
Sbjct: 7500052 acgacaagtattttaggacggata 7500029
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 179      taatactccctttatttcaaaata 202
                ||||||||||| ||||||||||||
Sbjct: 29441113 taatactccctctatttcaaaata 29441090
to top
>gb|AC009499.4| Homo sapiens BAC clone RP11-510D10 from 2, complete sequence
          Length = 176570

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   gataaaccttttgagactcc 161
             ||||||||||||||||||||
Sbjct: 63381 gataaaccttttgagactcc 63400
to top
>gb|AC073066.5| Homo sapiens BAC clone RP11-149P12 from 2, complete sequence
          Length = 169286

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 328    gtatttcatacataaaccaa 347
              ||||||||||||||||||||
Sbjct: 140817 gtatttcatacataaaccaa 140836
to top
>dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0510F09
          Length = 138277

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 179    taatactccctttatttcaaaata 202
              ||||||||||| ||||||||||||
Sbjct: 136175 taatactccctctatttcaaaata 136152
to top
>dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0456F08
          Length = 156850

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 179  taatactccctttatttcaaaata 202
            ||||||||||| ||||||||||||
Sbjct: 7387 taatactccctctatttcaaaata 7364
to top
>dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0079G12
          Length = 139796

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 180    aatactccctttatttcaaaatac 203
              |||||||||| |||||||||||||
Sbjct: 110089 aatactccctctatttcaaaatac 110112
to top
>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0057D11
          Length = 190790

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 180   aatactccctttatttcaaaatac 203
             |||||||||| |||||||||||||
Sbjct: 18675 aatactccctctatttcaaaatac 18698
to top
>dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1705_E12
          Length = 191416

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 243   acgacaagtattttagaacggata 266
             |||||||||||||||| |||||||
Sbjct: 93758 acgacaagtattttaggacggata 93735
to top
>emb|CT030245.8| M.truncatula DNA sequence from clone MTH2-59B18 on chromosome 3, complete
              sequence
          Length = 128436

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 360    gttgggaagaggctgctgca 379
              ||||||||||||||||||||
Sbjct: 119600 gttgggaagaggctgctgca 119581



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 360    gttgggaagaggctgctgca 379
              ||||||||||||||||||||
Sbjct: 114485 gttgggaagaggctgctgca 114466



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   gttgggaagaggctgctgca 379
             ||||||||||||||||||||
Sbjct: 32842 gttgggaagaggctgctgca 32823



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   gttgggaagaggctgctgca 379
             ||||||||||||||||||||
Sbjct: 27729 gttgggaagaggctgctgca 27710
to top
>emb|CR956402.15| M.truncatula DNA sequence from clone MTH2-50J5 on chromosome 3, complete
              sequence
          Length = 142361

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 360    gttgggaagaggctgctgca 379
              ||||||||||||||||||||
Sbjct: 103741 gttgggaagaggctgctgca 103722



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   gttgggaagaggctgctgca 379
             ||||||||||||||||||||
Sbjct: 98607 gttgggaagaggctgctgca 98588


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,840,905
Number of Sequences: 3902068
Number of extensions: 5840905
Number of successful extensions: 128596
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127976
Number of HSP's gapped (non-prelim): 620
length of query: 636
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 613
effective length of database: 17,143,297,704
effective search space: 10508841492552
effective search space used: 10508841492552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top