ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FOG_DROME (P40795) Protein folded gastrulation precursor [Contai... 34 0.087
2YRS7_CAEEL (Q10003) Hypothetical protein T05H10.7 29 3.7
3Y442_RICTY (Q68WS4) UPF0082 protein RT0442 28 4.8
4VSX2_ORYLA (Q9I9A3) Visual system homeobox 2 (Transcription fact... 28 6.3
5PPBD_BACSU (P42251) Alkaline phosphatase D precursor (EC 3.1.3.1... 28 6.3
6CN140_RAT (Q6AYP4) Protein C14orf140 homolog 28 6.3
7DCL4_ARATH (P84634) Dicer-like protein 4 (EC 3.1.26.-) 28 6.3
8HPPD_DAUCA (O23920) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13... 28 8.2

>FOG_DROME (P40795) Protein folded gastrulation precursor [Contains: Protein|
           folded gastrulation; G protein-coupled receptor ligand]
          Length = 730

 Score = 34.3 bits (77), Expect = 0.087
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +3

Query: 48  FHLGDITYLFTNNTTAPYSPSKRTSSDA---EQVPLEDNGDDLQTNSLSGTGYEGDDAVH 218
           FH        ++ TTA   PS  T  D      +P  DN D+L TN++ G G + DD  H
Sbjct: 467 FHYQHFVEDESSTTTATPEPSSSTPGDPIEQSDMPASDN-DNLMTNTIGGRGDDDDDGGH 525

Query: 219 E 221
           +
Sbjct: 526 K 526



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>YRS7_CAEEL (Q10003) Hypothetical protein T05H10.7|
          Length = 796

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = +3

Query: 81  NNTTAPYSPSKRTSSDAEQVPLEDNGDDLQ--TNSLSGTGYE 200
           NNT+ P+S     ++ ++   LE+N DD++  ++ L+ TG++
Sbjct: 747 NNTSPPHSAKLTRNAQSDSALLEENEDDVEHLSDKLNITGFQ 788



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>Y442_RICTY (Q68WS4) UPF0082 protein RT0442|
          Length = 252

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = +3

Query: 57  GDITYLFTNNTTAPYSPSKRTSSDAEQVPLEDNGDDLQTNSLSGTGYEGDDAVHELLG 230
           G + YLF +     Y  +  ++ D  +  +E  G+D+ +N  + T Y   +  ++ LG
Sbjct: 129 GSVNYLFNHCGVIQYPINIASNEDIFEAAIEAGGNDIISNDFAHTIYTDIENFYKALG 186



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>VSX2_ORYLA (Q9I9A3) Visual system homeobox 2 (Transcription factor VSX2)|
          Length = 393

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = +3

Query: 78  TNNTTAPYSPSKRTSSDAEQVPLEDNG------DDLQTNSLSGTGYEGDDAVHELLGVVA 239
           T    AP  PS + S D E      +G      ++++ NS++    +  +   ++LG V+
Sbjct: 303 TAKCDAPQQPSAQRSEDVEAEEKRSDGKSTISKEEMRENSIAALRAKAQEHSAKVLGTVS 362

Query: 240 PG 245
           PG
Sbjct: 363 PG 364



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>PPBD_BACSU (P42251) Alkaline phosphatase D precursor (EC 3.1.3.1) (APaseD)|
          Length = 556

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 42  LEFHLGDITYLFTNNTTAPYSPSKRTSSDAEQVPLED 152
           L FHLGD  Y +  N     + + RT + AE + L+D
Sbjct: 201 LVFHLGDYIYEYGPNEYVSKTGNVRTHNSAEIITLQD 237



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>CN140_RAT (Q6AYP4) Protein C14orf140 homolog|
          Length = 525

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 141 PLEDNGDDLQTNSLSGT 191
           P ED GD+LQ +SLSGT
Sbjct: 348 PAEDLGDELQASSLSGT 364



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>DCL4_ARATH (P84634) Dicer-like protein 4 (EC 3.1.26.-)|
          Length = 1589

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -3

Query: 201  LHSRCLIESWSADHLHCLREEPALHHCLFAYWV 103
            LH  C+   W   H  C  EE   H   F Y V
Sbjct: 1513 LHETCVANCWKPPHFECCEEEGPGHLKSFVYKV 1545



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>HPPD_DAUCA (O23920) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid
           oxidase)
          Length = 442

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +3

Query: 90  TAPYSPSKRTSSDAEQVPLEDNGDDLQTNSLSGTGYEGDDAVHEL 224
           TAPYSPS  TSS +  +P           S S +G+    A H L
Sbjct: 99  TAPYSPSTTTSSGSAAIP-----------SFSASGFHSFAAKHGL 132


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,815,334
Number of Sequences: 219361
Number of extensions: 436177
Number of successful extensions: 1481
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 80,573,946
effective HSP length: 58
effective length of database: 67,851,008
effective search space used: 1628424192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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