ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 78 1e-11
2dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic D... 78 1e-11
3dbj|AK108359.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 1e-11
4dbj|AK067180.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
5dbj|AK071569.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 1e-05
6dbj|AK070294.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 1e-05
7ref|XM_446867.1| Candida glabrata CBS138, CAGL0H01573g partial mRNA 44 0.20
8emb|CR380954.1| Candida glabrata strain CBS138 chromosome H comp... 44 0.20
9gb|AY769950.1| Homo sapiens coagulation factor VIII, procoagulan... 42 0.81
10ref|NG_005114.1| Homo sapiens coagulation factor VIII region (F8... 42 0.81
11gb|CP000114.1| Streptococcus agalactiae A909, complete genome 42 0.81
12emb|BX842564.3| Human DNA sequence from clone CTD-2037E7 on chro... 42 0.81
13gb|AE014234.1| Streptococcus agalactiae 2603V/R section 44 of 10... 42 0.81
14emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complet... 42 0.81
15gb|AC163771.5| Pan troglodytes BAC clone CH251-57G17 from chromo... 42 0.81
16emb|AL645722.2|HSA524G17 Homo sapiens chromosome X clone RP11-52... 42 0.81
17gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 42 0.81
18ref|XM_424700.1| PREDICTED: Gallus gallus similar to COUP transc... 40 3.2
19emb|AL731856.14| Human DNA sequence from clone RP11-647P3 on chr... 40 3.2
20gb|AE011665.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 3.2
21gb|AF499777.1| Xanthomonas axonopodis pv. glycines strain 8ra hr... 40 3.2
22dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 3.2
23gb|DQ286698.1| Xanthomonas campestris pv. vignicola strain 81-30... 40 3.2
24gb|DQ286697.1| Xanthomonas smithii subsp. citri strain 50E HrpE ... 40 3.2
25gb|DQ286696.1| Xanthomonas smithii subsp. smithii strain G34 Hrp... 40 3.2
26gb|DQ286695.1| Xanthomonas campestris pv. begoniae strain 077-33... 40 3.2
27gb|DQ286694.1| Xanthomonas campestris pv. vesicatoria strain 56 ... 40 3.2
28gb|DQ286693.1| Xanthomonas campestris pv. glycines strain 202 Hr... 40 3.2
29gb|AC151826.8| Monodelphis domestica, clone XX-25F7, complete se... 40 3.2 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                   
Query: 192      ggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcaccc 242
                ||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct: 17370864 ggctatgaacgccacgacgcggtccatgagctgcttggccttgtcgcaccc 17370814



 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                     
Query: 190      ccggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcaccc 242
                |||| |||||| || ||||||||||||| |||||||||||| |||||||||||
Sbjct: 17367490 ccggatatgaacgccacgacgcggtccaagagctgcttggccttgtcgcaccc 17367438



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                    
Query: 205      acgacgcggtccatgagctgcttggcgttgtcgcac 240
                |||||||||||||||||||||||||| |||||||||
Sbjct: 17363667 acgacgcggtccatgagctgcttggccttgtcgcac 17363632



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 188      caccggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcac 240
                ||||||||||||| || |||| ||| ||||||||||||||||| || ||||||
Sbjct: 17360617 caccggctatgaacgccacgatgcgatccatgagctgcttggcattctcgcac 17360565



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                             
Query: 196      atgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcac 240
                ||||| || ||||||||||||||||||| |||||| ||| |||||
Sbjct: 17373774 atgaacgccacgacgcggtccatgagctccttggccttggcgcac 17373730
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>dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0054F02
          Length = 180651

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                
Query: 192   ggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcaccc 242
             ||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct: 94777 ggctatgaacgccacgacgcggtccatgagctgcttggccttgtcgcaccc 94727



 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 190   ccggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcaccc 242
             |||| |||||| || ||||||||||||| |||||||||||| |||||||||||
Sbjct: 91403 ccggatatgaacgccacgacgcggtccaagagctgcttggccttgtcgcaccc 91351



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                 
Query: 205   acgacgcggtccatgagctgcttggcgttgtcgcac 240
             |||||||||||||||||||||||||| |||||||||
Sbjct: 87580 acgacgcggtccatgagctgcttggccttgtcgcac 87545



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 188   caccggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcac 240
             ||||||||||||| || |||| ||| ||||||||||||||||| || ||||||
Sbjct: 84530 caccggctatgaacgccacgatgcgatccatgagctgcttggcattctcgcac 84478



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                          
Query: 196   atgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcac 240
             ||||| || ||||||||||||||||||| |||||| ||| |||||
Sbjct: 97687 atgaacgccacgacgcggtccatgagctccttggccttggcgcac 97643
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>dbj|AK108359.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-C08, full
           insert sequence
          Length = 1059

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                              
Query: 192 ggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcaccc 242
           ||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct: 952 ggctatgaacgccacgacgcggtccatgagctgcttggccttgtcgcaccc 902
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>dbj|AK067180.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094M19, full
           insert sequence
          Length = 1117

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                               
Query: 205 acgacgcggtccatgagctgcttggcgttgtcgcac 240
           |||||||||||||||||||||||||| |||||||||
Sbjct: 979 acgacgcggtccatgagctgcttggccttgtcgcac 944
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>dbj|AK071569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102G04, full
            insert sequence
          Length = 1519

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 188  caccggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcac 240
            ||||||||||||| || |||| ||| ||||||||||||||||| || ||||||
Sbjct: 1183 caccggctatgaacgccacgatgcgatccatgagctgcttggcattctcgcac 1131
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>dbj|AK070294.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050O07, full
            insert sequence
          Length = 1333

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 188  caccggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcac 240
            ||||||||||||| || |||| ||| ||||||||||||||||| || ||||||
Sbjct: 1180 caccggctatgaacgccacgatgcgatccatgagctgcttggcattctcgcac 1128
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>ref|XM_446867.1| Candida glabrata CBS138, CAGL0H01573g partial mRNA
          Length = 1080

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 122 cagtgatgcagagcaggttcct 143
           ||||||||||||||||||||||
Sbjct: 288 cagtgatgcagagcaggttcct 309
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>emb|CR380954.1| Candida glabrata strain CBS138 chromosome H complete sequence
          Length = 1050361

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 122    cagtgatgcagagcaggttcct 143
              ||||||||||||||||||||||
Sbjct: 153827 cagtgatgcagagcaggttcct 153806
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>gb|AY769950.1| Homo sapiens coagulation factor VIII, procoagulant component
             (hemophilia A) (F8) gene, complete cds
          Length = 192029

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 64    tcacctatttattcacaaata 84
             |||||||||||||||||||||
Sbjct: 31914 tcacctatttattcacaaata 31894
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>ref|NG_005114.1| Homo sapiens coagulation factor VIII region (F8@) on chromosome X
          Length = 652898

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 64     tcacctatttattcacaaata 84
              |||||||||||||||||||||
Sbjct: 158629 tcacctatttattcacaaata 158649
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>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 63      atcacctatttattcacaaat 83
               |||||||||||||||||||||
Sbjct: 1002892 atcacctatttattcacaaat 1002872
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>emb|BX842564.3| Human DNA sequence from clone CTD-2037E7 on chromosome X Contains part
             of the F8 gene for coagulation factor VIII, procoagulant
             component (hemophilia A), complete sequence
          Length = 71989

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 64    tcacctatttattcacaaata 84
             |||||||||||||||||||||
Sbjct: 45724 tcacctatttattcacaaata 45744
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>gb|AE014234.1| Streptococcus agalactiae 2603V/R section 44 of 100 of the complete
             genome
          Length = 20692

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 63    atcacctatttattcacaaat 83
             |||||||||||||||||||||
Sbjct: 13796 atcacctatttattcacaaat 13776
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>emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complete genome, segment 6
          Length = 233050

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 63    atcacctatttattcacaaat 83
             |||||||||||||||||||||
Sbjct: 16354 atcacctatttattcacaaat 16334
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>gb|AC163771.5| Pan troglodytes BAC clone CH251-57G17 from chromosome unknown,
           complete sequence
          Length = 179603

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 64  tcacctatttattcacaaata 84
           |||||||||||||||||||||
Sbjct: 929 tcacctatttattcacaaata 909
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>emb|AL645722.2|HSA524G17 Homo sapiens chromosome X clone RP11-524G17 map Xq28, complete sequence
          Length = 189940

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 64    tcacctatttattcacaaata 84
             |||||||||||||||||||||
Sbjct: 48232 tcacctatttattcacaaata 48212
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 211    cggtccatgagctgcttggcg 231
              |||||||||||||||||||||
Sbjct: 965041 cggtccatgagctgcttggcg 965021
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>ref|XM_424700.1| PREDICTED: Gallus gallus similar to COUP transcription factor 1
           (LOC427108), mRNA
          Length = 937

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 196 atgaaggcgacgacgcggtc 215
           ||||||||||||||||||||
Sbjct: 509 atgaaggcgacgacgcggtc 490
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>emb|AL731856.14| Human DNA sequence from clone RP11-647P3 on chromosome 9, complete
             sequence
          Length = 51132

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 61    acatcacctatttattcacaaata 84
             ||||||||||| ||||||||||||
Sbjct: 32165 acatcacctatatattcacaaata 32188
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>gb|AE011665.1| Xanthomonas axonopodis pv. citri str. 306,  section 43 of 469 of the
            complete genome
          Length = 10257

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 219  gagctgcttggcgttgtcgc 238
            ||||||||||||||||||||
Sbjct: 9919 gagctgcttggcgttgtcgc 9938
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>gb|AF499777.1| Xanthomonas axonopodis pv. glycines strain 8ra hrp pathogenicity
             island, complete sequence
          Length = 29206

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   gagctgcttggcgttgtcgc 238
             ||||||||||||||||||||
Sbjct: 20787 gagctgcttggcgttgtcgc 20768
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    ggcgacgacgcggtccatga 220
              ||||||||||||||||||||
Sbjct: 661020 ggcgacgacgcggtccatga 661001
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>gb|DQ286698.1| Xanthomonas campestris pv. vignicola strain 81-30 HrpE (hrpE) gene,
           complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 gagctgcttggcgttgtcgc 238
           ||||||||||||||||||||
Sbjct: 270 gagctgcttggcgttgtcgc 251
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>gb|DQ286697.1| Xanthomonas smithii subsp. citri strain 50E HrpE (hrpE) gene,
           complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 gagctgcttggcgttgtcgc 238
           ||||||||||||||||||||
Sbjct: 270 gagctgcttggcgttgtcgc 251
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>gb|DQ286696.1| Xanthomonas smithii subsp. smithii strain G34 HrpE (hrpE) gene,
           complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 gagctgcttggcgttgtcgc 238
           ||||||||||||||||||||
Sbjct: 270 gagctgcttggcgttgtcgc 251
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>gb|DQ286695.1| Xanthomonas campestris pv. begoniae strain 077-3382 HrpE (hrpE)
           gene, complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 gagctgcttggcgttgtcgc 238
           ||||||||||||||||||||
Sbjct: 270 gagctgcttggcgttgtcgc 251
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>gb|DQ286694.1| Xanthomonas campestris pv. vesicatoria strain 56 HrpE (hrpE) gene,
           complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 gagctgcttggcgttgtcgc 238
           ||||||||||||||||||||
Sbjct: 270 gagctgcttggcgttgtcgc 251
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>gb|DQ286693.1| Xanthomonas campestris pv. glycines strain 202 HrpE (hrpE) gene,
           complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 gagctgcttggcgttgtcgc 238
           ||||||||||||||||||||
Sbjct: 270 gagctgcttggcgttgtcgc 251
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>gb|AC151826.8| Monodelphis domestica, clone XX-25F7, complete sequence
          Length = 152619

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     aaaacttgaattccatctag 57
              ||||||||||||||||||||
Sbjct: 104328 aaaacttgaattccatctag 104347


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,704,054
Number of Sequences: 3902068
Number of extensions: 1704054
Number of successful extensions: 29080
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28997
Number of HSP's gapped (non-prelim): 83
length of query: 248
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 226
effective length of database: 17,147,199,772
effective search space: 3875267148472
effective search space used: 3875267148472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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