ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MAGD4_HUMAN (Q96JG8) Melanoma-associated antigen D4 (MAGE-D4 ant... 30 5.4
2VWF_BOVIN (P80012) Von Willebrand factor precursor (vWF) (Fragment) 30 9.2

>MAGD4_HUMAN (Q96JG8) Melanoma-associated antigen D4 (MAGE-D4 antigen) (MAGE-E1|
           antigen)
          Length = 741

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 438 EGAD-VESEEMMEEDQTSPAGAAYNYNTFESFMLHLWHFLQLIVGRMKPRVTRLPSTPW 265
           EG+D V  EEM+E +     GA   Y T  SF +H+        G + P +  L + PW
Sbjct: 20  EGSDEVGEEEMVEGNDYEEFGAFGGYGTLTSFDIHILR----AFGSLGPGLRILSNEPW 74



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>VWF_BOVIN (P80012) Von Willebrand factor precursor (vWF) (Fragment)|
          Length = 937

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +1

Query: 499 SADCAPNGILCSFHLPSLCVLTCDIYMEISEGSNVLNAKLKTIIHKHSFCSELQVE 666
           +A CA  G+   +  PS C L+C       +     N   +++ H    C+E+ +E
Sbjct: 629 AAACARRGVHVGWREPSFCALSCPHGQVYQQCGTPCNLTCRSLSHPDEECTEVCLE 684


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,706,835
Number of Sequences: 219361
Number of extensions: 1784727
Number of successful extensions: 5892
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5884
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6969622431
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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