ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC149676.2| Bos taurus BAC CH240-43C16 (Children's Hospital ... 46 0.097
2gb|AC150881.4| Bos taurus BAC CH240-354J15 (Children's Hospital... 46 0.097
3gb|AF453325.2| Bos taurus pancreatic anionic trypsinogen (TRYP8)... 46 0.097
4gb|AY611008.1| Bos taurus clone 33E10 repeat region D6Z1 44 0.38
5gb|AC150524.3| Bos taurus BAC CH240-89P8 (Children's Hospital O... 44 0.38
6gb|AC087843.2| Bos taurus clone RP42-550C12, complete sequence 44 0.38
7gb|AC087860.2| Bos taurus clone RP42-135P2, complete sequence 44 0.38
8gb|DP000008.1| Bos taurus target 1 genomic scaffold 44 0.38
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.38
10gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare str... 44 0.38
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
12dbj|AK065966.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
13emb|AL731561.12| Human DNA sequence from clone RP11-463P17 on ch... 42 1.5
14gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 1.5
15ref|XM_786299.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.5
16gb|AC103584.15| Bos taurus clone rp42-51p13, complete sequence 42 1.5
17gb|AC107725.10| Mus musculus chromosome 5, clone RP23-477O15, co... 40 6.0
18ref|XM_513746.1| PREDICTED: Pan troglodytes similar to KIAA0454 ... 40 6.0
19gb|AC091252.3| Bos taurus clone RP42-324C24, complete sequence 40 6.0
20gb|AC144736.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
21gb|AC125483.4| Mus musculus BAC clone RP23-109I9 from chromosome... 40 6.0
22emb|X95391.1|BTINRA206 B.taurus microsatellite INRA206 DNA 40 6.0
23gb|AC110269.8| Mus musculus chromosome 1, clone RP23-322P13, com... 40 6.0
24gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.0
25gb|AC127173.17| Mus musculus strain C57BL/6J clone rp23-39k4 map... 40 6.0
26emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segmen... 40 6.0
27gb|AC021036.6| Homo sapiens chromosome 10 clone RP11-420K10, com... 40 6.0
28dbj|AK042152.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 6.0
29dbj|AK041385.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 6.0
30gb|AC159326.9| Mus musculus 10 BAC RP23-451H6 (Roswell Park Canc... 40 6.0
31gb|AC153548.4| Mus musculus 10 BAC RP23-356G7 (Roswell Park Canc... 40 6.0
32dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
33dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
34gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
35dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
36dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
37gb|AC104259.14| Homo sapiens chromosome 15, clone CTD-2525I4, co... 40 6.0
38dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
39emb|CT009721.14| Mouse DNA sequence from clone RP23-130L13 on ch... 40 6.0
40gb|AC013489.17| Homo sapiens chromosome 15, clone RP11-97O12, co... 40 6.0
41dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
42dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0 
>gb|AC149676.2| Bos taurus  BAC CH240-43C16 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 168416

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 209   aaaaaacctgcctgccaatgcaa 231
             |||||||||||||||||||||||
Sbjct: 57926 aaaaaacctgcctgccaatgcaa 57948
to top
>gb|AC150881.4| Bos taurus  BAC CH240-354J15 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 174996

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 209    aaaaaacctgcctgccaatgcaa 231
              |||||||||||||||||||||||
Sbjct: 146001 aaaaaacctgcctgccaatgcaa 146023
to top
>gb|AF453325.2| Bos taurus pancreatic anionic trypsinogen (TRYP8) gene, complete cds;
             germline T-cell receptor beta DJC region genes, partial
             cds
          Length = 151480

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 208   caaaaaacctgcctgccaatgca 230
             |||||||||||||||||||||||
Sbjct: 68132 caaaaaacctgcctgccaatgca 68154
to top
>gb|AY611008.1| Bos taurus clone 33E10 repeat region D6Z1
          Length = 8247

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 209  aaaaaacctgcctgccaatgca 230
            ||||||||||||||||||||||
Sbjct: 5948 aaaaaacctgcctgccaatgca 5969
to top
>gb|AC150524.3| Bos taurus  BAC CH240-89P8 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 189720

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 209   aaaaaacctgcctgccaatgca 230
             ||||||||||||||||||||||
Sbjct: 33197 aaaaaacctgcctgccaatgca 33176
to top
>gb|AC087843.2| Bos taurus clone RP42-550C12, complete sequence
          Length = 157165

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 209    aaaaaacctgcctgccaatgca 230
              ||||||||||||||||||||||
Sbjct: 156677 aaaaaacctgcctgccaatgca 156656
to top
>gb|AC087860.2| Bos taurus clone RP42-135P2, complete sequence
          Length = 203696

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 209  aaaaaacctgcctgccaatgca 230
            ||||||||||||||||||||||
Sbjct: 9012 aaaaaacctgcctgccaatgca 8991
to top
>gb|DP000008.1| Bos taurus target 1 genomic scaffold
          Length = 2072671

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 209    aaaaaacctgcctgccaatgca 230
              ||||||||||||||||||||||
Sbjct: 599516 aaaaaacctgcctgccaatgca 599495



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 213     aacctgcctgccaatgcaaa 232
               ||||||||||||||||||||
Sbjct: 1677175 aacctgcctgccaatgcaaa 1677156
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 385     caggttgctgagggtaagctgc 406
               ||||||||||||||||||||||
Sbjct: 5729403 caggttgctgagggtaagctgc 5729424



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 198     ctgctgctgccaaaaaacct 217
               ||||||||||||||||||||
Sbjct: 5352565 ctgctgctgccaaaaaacct 5352546
to top
>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0021B21, from chromosome 3, complete sequence
          Length = 166777

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 385    caggttgctgagggtaagctgc 406
              ||||||||||||||||||||||
Sbjct: 101768 caggttgctgagggtaagctgc 101747
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 385     caggttgctgagggtaagctgc 406
               ||||||||||||||||||||||
Sbjct: 5728616 caggttgctgagggtaagctgc 5728637



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 198     ctgctgctgccaaaaaacct 217
               ||||||||||||||||||||
Sbjct: 5351780 ctgctgctgccaaaaaacct 5351761
to top
>dbj|AK065966.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047E12, full
            insert sequence
          Length = 2797

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 385  caggttgctgagggtaagctgc 406
            ||||||||||||||||||||||
Sbjct: 2523 caggttgctgagggtaagctgc 2502
to top
>emb|AL731561.12| Human DNA sequence from clone RP11-463P17 on chromosome 10 Contains a
             novel gene, gene FLJ32104, a novel gene, the RBP3 gene for
             retinol binding protein 3, the GDF2 gene for growth
             differentiation factor 2, the GDF10 gene for growth
             differentiation factor 10 and three CpG islands, complete
             sequence
          Length = 204512

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 95    tacaactgcagctgctgcaaa 115
             |||||||||||||||||||||
Sbjct: 52819 tacaactgcagctgctgcaaa 52799
to top
>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 200     gctgctgccaaaaaacctgcc 220
               |||||||||||||||||||||
Sbjct: 3798832 gctgctgccaaaaaacctgcc 3798812
to top
>ref|XM_786299.1| PREDICTED: Strongylocentrotus purpuratus similar to prolyl
           endopeptidase-like (LOC586521), partial mRNA
          Length = 873

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 196 gcctgctgctgccaaaaaacc 216
           |||||||||||||||||||||
Sbjct: 3   gcctgctgctgccaaaaaacc 23
to top
>gb|AC103584.15| Bos taurus clone rp42-51p13, complete sequence
          Length = 177017

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 210   aaaaacctgcctgccaatgca 230
             |||||||||||||||||||||
Sbjct: 81677 aaaaacctgcctgccaatgca 81697
to top
>gb|AC107725.10| Mus musculus chromosome 5, clone RP23-477O15, complete sequence
          Length = 169321

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    aacctgcctgccaatgcaaa 232
              ||||||||||||||||||||
Sbjct: 112648 aacctgcctgccaatgcaaa 112629
to top
>ref|XM_513746.1| PREDICTED: Pan troglodytes similar to KIAA0454 protein (LOC457242),
           mRNA
          Length = 1126

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 381 acagcaggttgctgagggtaagctgctg 408
           ||||||| |||| |||||||||||||||
Sbjct: 288 acagcagattgcagagggtaagctgctg 315
to top
>gb|AC091252.3| Bos taurus clone RP42-324C24, complete sequence
          Length = 183383

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    aacctgcctgccaatgcaaa 232
              ||||||||||||||||||||
Sbjct: 156959 aacctgcctgccaatgcaaa 156940
to top
>gb|AC144736.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBa0008E07, complete sequence
          Length = 146679

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 385    caggttgctgagggtaagct 404
              ||||||||||||||||||||
Sbjct: 105922 caggttgctgagggtaagct 105941
to top
>gb|AC125483.4| Mus musculus BAC clone RP23-109I9 from chromosome 1, complete sequence
          Length = 201732

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    caactgcagctgctgcaaat 116
             ||||||||||||||||||||
Sbjct: 25890 caactgcagctgctgcaaat 25909
to top
>emb|X95391.1|BTINRA206 B.taurus microsatellite INRA206 DNA
          Length = 508

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 aacctgcctgccaatgcaaa 232
           ||||||||||||||||||||
Sbjct: 445 aacctgcctgccaatgcaaa 464
to top
>gb|AC110269.8| Mus musculus chromosome 1, clone RP23-322P13, complete sequence
          Length = 251855

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     caactgcagctgctgcaaat 116
              ||||||||||||||||||||
Sbjct: 146999 caactgcagctgctgcaaat 147018
to top
>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0009J13, from chromosome 3, complete sequence
          Length = 147205

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   ctgctgctgccaaaaaacct 217
             ||||||||||||||||||||
Sbjct: 58733 ctgctgctgccaaaaaacct 58714
to top
>gb|AC127173.17| Mus musculus strain C57BL/6J clone rp23-39k4 map 10, complete sequence
          Length = 228883

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     catgagtaaaggaagatcct 68
              ||||||||||||||||||||
Sbjct: 120641 catgagtaaaggaagatcct 120660
to top
>emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segment 2/7
          Length = 349652

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 312   tgacaacaccaatctagaaatcag 335
             |||||||||| |||||||||||||
Sbjct: 31973 tgacaacaccgatctagaaatcag 31996
to top
>gb|AC021036.6| Homo sapiens chromosome 10 clone RP11-420K10, complete sequence
          Length = 169305

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     agattcctagaaacacaaaa 25
             ||||||||||||||||||||
Sbjct: 62319 agattcctagaaacacaaaa 62338
to top
>dbj|AK042152.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630064C07 product:unclassifiable, full
            insert sequence
          Length = 1878

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   caactgcagctgctgcaaat 116
            ||||||||||||||||||||
Sbjct: 1352 caactgcagctgctgcaaat 1333
to top
>dbj|AK041385.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630006G22 product:unclassifiable, full
            insert sequence
          Length = 1878

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   caactgcagctgctgcaaat 116
            ||||||||||||||||||||
Sbjct: 1354 caactgcagctgctgcaaat 1335
to top
>gb|AC159326.9| Mus musculus 10 BAC RP23-451H6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 230689

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    catgagtaaaggaagatcct 68
             ||||||||||||||||||||
Sbjct: 25163 catgagtaaaggaagatcct 25182
to top
>gb|AC153548.4| Mus musculus 10 BAC RP23-356G7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 194511

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    catgagtaaaggaagatcct 68
             ||||||||||||||||||||
Sbjct: 21948 catgagtaaaggaagatcct 21929
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 385      caggttgctgagggtaagct 404
                ||||||||||||||||||||
Sbjct: 12338444 caggttgctgagggtaagct 12338463
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 385      caggttgctgagggtaagct 404
                ||||||||||||||||||||
Sbjct: 31963216 caggttgctgagggtaagct 31963235



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 385      caggttgctgagggtaagct 404
                ||||||||||||||||||||
Sbjct: 10209952 caggttgctgagggtaagct 10209933
to top
>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0006P09, complete sequence
          Length = 153950

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   ctgctgctgccaaaaaacct 217
             ||||||||||||||||||||
Sbjct: 82880 ctgctgctgccaaaaaacct 82861
to top
>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0512C01
          Length = 176261

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 385  caggttgctgagggtaagct 404
            ||||||||||||||||||||
Sbjct: 5030 caggttgctgagggtaagct 5049
to top
>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1131G08
          Length = 158241

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 385    caggttgctgagggtaagct 404
              ||||||||||||||||||||
Sbjct: 149294 caggttgctgagggtaagct 149313
to top
>gb|AC104259.14| Homo sapiens chromosome 15, clone CTD-2525I4, complete sequence
          Length = 155753

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      agattcctagaaacacaaaa 25
              ||||||||||||||||||||
Sbjct: 114916 agattcctagaaacacaaaa 114935
to top
>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0498A12
          Length = 159749

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 385   caggttgctgagggtaagct 404
             ||||||||||||||||||||
Sbjct: 75266 caggttgctgagggtaagct 75247
to top
>emb|CT009721.14| Mouse DNA sequence from clone RP23-130L13 on chromosome 9, complete
             sequence
          Length = 50450

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   gtaggtacacatgcccatgc 309
             ||||||||||||||||||||
Sbjct: 21698 gtaggtacacatgcccatgc 21679
to top
>gb|AC013489.17| Homo sapiens chromosome 15, clone RP11-97O12, complete sequence
          Length = 175836

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     agattcctagaaacacaaaa 25
             ||||||||||||||||||||
Sbjct: 39363 agattcctagaaacacaaaa 39382
to top
>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0460E08
          Length = 170021

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   caggttgctgagggtaagct 404
             ||||||||||||||||||||
Sbjct: 59943 caggttgctgagggtaagct 59962
to top
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0004B13
          Length = 142268

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 385    caggttgctgagggtaagct 404
              ||||||||||||||||||||
Sbjct: 134551 caggttgctgagggtaagct 134532


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,136,175
Number of Sequences: 3902068
Number of extensions: 4136175
Number of successful extensions: 75786
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75503
Number of HSP's gapped (non-prelim): 283
length of query: 443
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 421
effective length of database: 17,147,199,772
effective search space: 7218971104012
effective search space used: 7218971104012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top