ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4a24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1E1A_ADE07 (P03256) Early E1A 28 kDa protein 29 3.3
2SUIS_RAT (P23739) Sucrase-isomaltase, intestinal [Contains: Sucr... 28 4.3
3HEMK_RICPR (Q9ZCB3) Bifunctional methyltransferase [Includes: He... 28 4.3
4SUIS_HUMAN (P14410) Sucrase-isomaltase, intestinal [Contains: Su... 28 7.3
5MBX1_SCHPO (O42954) MADS-box transcription factor 1 28 7.3
6SUIS_SUNMU (O62653) Sucrase-isomaltase, intestinal [Contains: Su... 28 7.3
7TP53B_MOUSE (P70399) Tumor suppressor p53-binding protein 1 (p53... 27 9.6

>E1A_ADE07 (P03256) Early E1A 28 kDa protein|
          Length = 261

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +1

Query: 31  SLCYSRAH*IMCFRPITDKNKVKCSATEPPQXVMVVAKA--LSSILILPKYNKR 186
           SLCY R H    + P++D       +T  P  +   A A     I + PK  KR
Sbjct: 181 SLCYMRMHCHFIYSPVSDDESPSPDSTTSPPEIQAPAPANVCKPIPVKPKPGKR 234



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>SUIS_RAT (P23739) Sucrase-isomaltase, intestinal [Contains: Sucrase (EC|
           3.2.1.48); Isomaltase (EC 3.2.1.10)]
          Length = 1840

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 246 WPLASREQLPADESHNQRGEE 308
           WP+ +R+++P D +HN  G +
Sbjct: 267 WPIFTRDEIPGDNNHNLYGHQ 287



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>HEMK_RICPR (Q9ZCB3) Bifunctional methyltransferase [Includes: HemK protein|
           homolog (EC 2.1.1.-) (M.RprHemKP); tRNA
           (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)
           (tRNA(m7G46)-methyltransferase)]
          Length = 518

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +1

Query: 142 KALSSILILPKYNKRHLGSAKSXVNLALLCFADYIGLWQAENSCQLMKAITSEE-KSSKP 318
           K+L S+L    YN   LG+    + ++LLC      +   + S   +K   S   K +  
Sbjct: 123 KSLDSVLTTQSYNILELGTGSGCIAISLLCELPNTNIIATDISVDAIKVAKSNSIKYNVT 182

Query: 319 TTLGVCHSN 345
             + + HSN
Sbjct: 183 DRIQIIHSN 191



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>SUIS_HUMAN (P14410) Sucrase-isomaltase, intestinal [Contains: Sucrase (EC|
           3.2.1.48); Isomaltase (EC 3.2.1.10)]
          Length = 1826

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 246 WPLASREQLPADESHNQRGEE 308
           WP+ +R+QLP D ++N  G +
Sbjct: 257 WPIFTRDQLPGDNNNNLYGHQ 277



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>MBX1_SCHPO (O42954) MADS-box transcription factor 1|
          Length = 436

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 109 TEPPQXVMVVAKALSSILILPKYNKRHLGSAKSXVNLALLCFAD-YIGLWQAENSCQLMK 285
           + P + +  ++ A +  L    +N+R LG  K    L++LC A   + ++ ++N+C +  
Sbjct: 12  SSPRRSIQRISDAKNKALT---FNRRRLGLIKKAHELSVLCDAKVVVMIFDSKNACHVYS 68

Query: 286 AITSEEK 306
           +   EE+
Sbjct: 69  SEEPEEQ 75



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>SUIS_SUNMU (O62653) Sucrase-isomaltase, intestinal [Contains: Sucrase (EC|
           3.2.1.48); Isomaltase (EC 3.2.1.10)]
          Length = 1812

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 246 WPLASREQLPADESHNQRGEE 308
           WP+ +R+QLP D ++N  G +
Sbjct: 243 WPIFTRDQLPGDNNNNLYGHQ 263



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>TP53B_MOUSE (P70399) Tumor suppressor p53-binding protein 1 (p53-binding|
           protein 1) (p53BP1) (53BP1)
          Length = 1957

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 232 FADYIGLWQAENSCQLMKAITSEEKSSKPTTLG 330
           F D +GL    +SC+LM + +   +SSK  +LG
Sbjct: 494 FTDDLGLSMTGDSCKLMLSTSEYSQSSKMESLG 526


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,620,293
Number of Sequences: 219361
Number of extensions: 683494
Number of successful extensions: 1386
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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