ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal4a21 |
|---|---|
| Clone Library Name | barley_pub |
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from transposon TNT| 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1328 Score = 73.9 bits (180), Expect(2) = 5e-15 Identities = 36/103 (34%), Positives = 58/103 (56%) Frame = -2 Query: 338 DWLIDTGANVHVCGDISMFSSYESAGTSTVLMGNGSSASVRGVGTVDLKFTSGKVMRLKN 159 +W++DT A+ H +F Y + TV MGN S + + G+G + +K G + LK+ Sbjct: 293 EWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKD 352 Query: 158 VHYVPSVNKNLVSGSHLCRDGYKLVFVSNKFVISKYGTFVGKG 30 V +VP + NL+SG L RDGY+ F + K+ ++K + KG Sbjct: 353 VRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKG 395 Score = 26.6 bits (57), Expect(2) = 5e-15 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -3 Query: 499 CHVCGDPDHWAPNCPDKRQHGKG 431 C+ C P H+ +CP+ R+ GKG Sbjct: 232 CYNCNQPGHFKRDCPNPRK-GKG 253
>YCH5_YEAST (P25601) Hypothetical transposon Ty5-1 protein YCL075W| Length = 146 Score = 52.8 bits (125), Expect = 9e-07 Identities = 26/73 (35%), Positives = 41/73 (56%) Frame = -2 Query: 338 DWLIDTGANVHVCGDISMFSSYESAGTSTVLMGNGSSASVRGVGTVDLKFTSGKVMRLKN 159 +W+ DTG H+C D S+FSS+ + + G G S + G GTV++ ++L + Sbjct: 78 EWIFDTGCTSHMCHDRSIFSSFTRSSRKDFVRGVGGSIPIMGSGTVNI-----GTVQLHD 132 Query: 158 VHYVPSVNKNLVS 120 V YVP + NL+S Sbjct: 133 VSYVPDLPVNLIS 145
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein| Length = 1803 Score = 40.8 bits (94), Expect = 0.003 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 6/105 (5%) Frame = -2 Query: 332 LIDTGANVHVCGDISMFSSYESAGTSTVLMGNG--SSASVRGVGTVDLK----FTSGKVM 171 +IDTG+ V++ D ++ +YE + ST G G SS SV+G G + +K T K + Sbjct: 413 IIDTGSGVNITNDKTLLHNYEDSNRSTRFFGIGKNSSVSVKGYGYIKIKNGHNNTDNKCL 472 Query: 170 RLKNVHYVPSVNKNLVSGSHLCRDGYKLVFVSNKFVISKYGTFVG 36 +YVP ++S C D K K V+S+ T +G Sbjct: 473 L---TYYVPEEESTIIS----CYDLAK----KTKMVLSRKYTRLG 506
>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein| p2A; Core protein p2B; Core protein p10; Capsid protein p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)] Length = 701 Score = 35.0 bits (79), Expect = 0.19 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -3 Query: 505 GVCHVCGDPDHWAPNCPDKRQHGKGGKTANVVIG 404 G+C+ CG P H+ CP KR+ G + + G Sbjct: 507 GLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNG 540
>IE63_HCMVA (P16749) Transcriptional regulator IE63 homolog (Protein UL69)| Length = 744 Score = 32.7 bits (73), Expect = 0.95 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -3 Query: 487 GDPDHWAPNCPDKRQHGKGGKTANVVIG 404 GDPDH+ P P +H GG ++++G Sbjct: 94 GDPDHYPPPLPPSSRHALGGTGGHIIMG 121
>PCX_DROME (P18490) Protein pecanex| Length = 3433 Score = 32.3 bits (72), Expect = 1.2 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +3 Query: 252 GGSPCGLIRRKHGNITAYMHISTRVNQ 332 GGS G+ RR+H N T+Y H S++ N+ Sbjct: 556 GGSAAGMKRRRHSNATSYKHGSSQSNK 582
>TRYB_DROME (P35004) Trypsin beta precursor (EC 3.4.21.4)| Length = 253 Score = 30.8 bits (68), Expect = 3.6 Identities = 23/80 (28%), Positives = 39/80 (48%) Frame = -2 Query: 332 LIDTGANVHVCGDISMFSSYESAGTSTVLMGNGSSASVRGVGTVDLKFTSGKVMRLKNVH 153 +++ A +H+ +S S+ ++ G ++ NG++ASV G GT +SG + Sbjct: 113 MVNDIAVLHLSSSLSFSSTIKAIGLASSNPANGAAASVSGWGTE----SSGSSSIPSQLR 168 Query: 152 YVPSVNKNLVSGSHLCRDGY 93 Y VN N+VS S Y Sbjct: 169 Y---VNVNIVSQSRCSSSSY 185
>MPE1_YEAST (P35728) Protein MPE1| Length = 441 Score = 30.8 bits (68), Expect = 3.6 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = -3 Query: 502 VCHVCGDPDHWAPNCPDKRQHGKGGK 425 +C+ CG DHW NCP GK Sbjct: 181 MCYRCGGRDHWIKNCPTNSDPNFEGK 206
>GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (Matrix| protein); Core protein p24; Core protein p12] Length = 391 Score = 30.4 bits (67), Expect = 4.7 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = -3 Query: 505 GVCHVCGDPDHWAPNCP 455 G C +C DP HW +CP Sbjct: 369 GPCPICKDPSHWKRDCP 385
>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix| protein); Core protein p24; Core protein p12] Length = 391 Score = 30.4 bits (67), Expect = 4.7 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = -3 Query: 505 GVCHVCGDPDHWAPNCP 455 G C +C DP HW +CP Sbjct: 369 GPCPICKDPSHWKRDCP 385
>BARD1_RAT (Q9QZH2) BRCA1-associated RING domain protein 1 (BARD-1)| Length = 768 Score = 30.0 bits (66), Expect = 6.2 Identities = 12/43 (27%), Positives = 20/43 (46%) Frame = -2 Query: 395 CGGC*YGIFPTSLSVCHFPDWLIDTGANVHVCGDISMFSSYES 267 C GC + VCH P W++D N + I ++S ++ Sbjct: 65 CSGCISDCVGSGCPVCHTPAWILDLKINRQLDSMIQLYSKLQN 107
>GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (p19); Core| protein p24; Core protein p12 (p15)] Length = 432 Score = 30.0 bits (66), Expect = 6.2 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = -3 Query: 505 GVCHVCGDPDHWAPNCPDKRQHGKGGK 425 G C +C DP HW +CP + + G+ Sbjct: 383 GPCPLCQDPSHWKRDCPQLKPPQEEGE 409 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,172,064 Number of Sequences: 219361 Number of extensions: 1922996 Number of successful extensions: 5685 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5412 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5683 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
