>DMD_CAEEL (Q9TW65) Dystrophin-1|
          Length = 3674

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 101 PTTPPKDSHPLAKEHGKTIESSKRNVTRMTRPLSATRSSGRVDRRSR 241
           P TPP   H    + GK+ E S     R  +  S+++ SG+  +  R
Sbjct: 279 PQTPPTAHHQAMLDRGKSFEQSAEGEVRSRKSSSSSQKSGKSKKARR 325

>VGP_MABVP (P35254) Structural glycoprotein precursor (Virion spike|
           glycoprotein)
          Length = 681

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +2

Query: 95  PKPTTPPKDSHPLAKEHGKTIESSKRNVTRMTR--PLSATRSSGRVDRRSRITSLCTPTL 268
           P+P+TP ++ +      G   E +K N T      P + T  S     ++  ++L   ++
Sbjct: 300 PQPSTPQQEGNNTDHSQGTVTEPNKTNTTAQPSMPPHNTTAISTNNTSKNNFSTL---SV 356

Query: 269 QIANTNNFDNQ 301
            + NT N+D Q
Sbjct: 357 SLQNTTNYDTQ 367

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = +2

Query: 74  TSYNL*FPKPTTPPKDSHPLAKEHGKTIESSKRNVTRMTRPLSATRSSGRVDRRSRITSL 253
           TS  L  PKP   P+   P  +++ K     K      TRP S +RS  R   RSR  S 
Sbjct: 241 TSDILKVPKPEPIPEPKEPSPEKNSK-----KEKEKEKTRPRSRSRSKSRSRTRSRSPSH 295

Query: 254 CTP 262
             P
Sbjct: 296 TRP 298

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = +2

Query: 74  TSYNL*FPKPTTPPKDSHPLAKEHGKTIESSKRNVTRMTRPLSATRSSGRVDRRSRITSL 253
           TS  L  PKP   P+   P  +++ K     K      TRP S +RS  R   RSR  S 
Sbjct: 241 TSDILKVPKPEPIPEPKEPSPEKNSK-----KEKEKEKTRPRSRSRSKSRSRTRSRSPSH 295

Query: 254 CTP 262
             P
Sbjct: 296 TRP 298

>PRELP_MOUSE (Q9JK53) Prolargin precursor (Proline-arginine-rich end|
           leucine-rich repeat protein)
          Length = 378

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +3

Query: 21  LINSRVRKMDQLV*QTK*PLTTYNFQNQQHPQRTRILLQRNMEKLLSRQNVMS 179
           L N+R+RK+DQ V   K P   + +  +   +     L RN+E+L   QN++S
Sbjct: 129 LDNNRIRKVDQRV-LGKLPSLAFLYMEKNQLEEVPSALPRNLEQLRLSQNLIS 180

>MCM16_YEAST (Q12262) Central kinetochore subunit MCM16 (Minichromosome|
           maintenance protein 16)
          Length = 181

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +2

Query: 92  FPKPTTPPKDSHPLAKEHGKTIESSKRNVT 181
           FPKPT PP DS       GK +E  K N T
Sbjct: 135 FPKPTIPPDDSDTA----GKQVEVEKENET 160

>VU47_HHV6Z (P52549) Glycoprotein U47 precursor|
          Length = 738

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 5/116 (4%)
 Frame = +2

Query: 5   FSKVQTD*FKGTENGP---ASMTD*VTSY--NL*FPKPTTPPKDSHPLAKEHGKTIESSK 169
           F+++QTD  K T N P   A  T+ +        FP+P   P D   L      TI++ +
Sbjct: 274 FTELQTDTIKVTPNTPTITAQTTESIKKVVKRSDFPRPMYTPTDIPTLTIRRNATIKTEQ 333

Query: 170 RNVTRMTRPLSATRSSGRVDRRSRITSLCTPTLQIANTNNFDNQKKVYTELAAALG 337
                   P S  + +   +   RI      T    NT     QK   T  A  +G
Sbjct: 334 NTENPTENPKSPPKPTNFENTTIRIPETFESTTVATNT----TQKLESTTFATTIG 385

>AUXI_BOVIN (Q27974) Auxilin|
          Length = 910

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
 Frame = +2

Query: 92  FPKPTTPPKDSHPLAKEHGK-----TIESSKRNVTRMTRPLSATRSSGRVDRRSRITSLC 256
           F  P  PP +S  L+   G       ++S +  V  +  P   T S+    RRS  ++  
Sbjct: 508 FSSPAAPPSNSELLSDLFGGGGAAGPVQSGQSGVDDVFHPSGPT-STQSTPRRSATSTSA 566

Query: 257 TPTLQIANTNNFD 295
           +PTL++     FD
Sbjct: 567 SPTLRVGEGATFD 579

>CUPC4_CANPG (P81583) Cuticle protein CP1499 (CPCP1499)|
          Length = 148

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 95  PKPTTPPKDSHPLAKEHGKTIESSKRNVTRMTRPLSATRSS 217
           PKP  PPK   PLA +    +  S  NV  +T  LSA R++
Sbjct: 28  PKPADPPKWYGPLASKIPAGLPGSSANVA-LTADLSAARNA 67

>THRC_SCHPO (Q42598) Threonine synthase (EC 4.2.3.1) (TS)|
          Length = 514

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 415 PNHWSSEESEVASRWQNHY 471
           PNH  +E SE+ SRW N +
Sbjct: 356 PNHTPAEASEILSRWMNEF 374

>RFBX_SHIDY (Q03583) Putative O-antigen transporter|
          Length = 396

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = -2

Query: 348 KSAWP---SAAASSVYTFF*LSKLLVLAIWRVGVHRDVILLRLSTLPELLVAESGLVIRV 178
           K AWP   S AA+SVYT+F    +++L+ +      D ++   +   +L +A  GL+I +
Sbjct: 206 KEAWPFFLSLAATSVYTYF---NVILLSFYA----GDYVVANFNAADKLRMAAQGLLIPI 258


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,895,362
Number of Sequences: 219361
Number of extensions: 1452859
Number of successful extensions: 3684
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3682
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)