ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal4a06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK060702.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-G02, full insert sequence Length = 1345 Score = 258 bits (130), Expect = 2e-65 Identities = 193/214 (90%) Strand = Plus / Minus Query: 527 ttttgaagaattcaaatgagttaggaaattgatgcgtatcaacaagatgctgctgccgac 586 ||||||||||||||||||| || ||||| || ||| |||||| ||||||||||||||||| Sbjct: 708 ttttgaagaattcaaatgacttgggaaactggtgcttatcaagaagatgctgctgccgac 649 Query: 587 ttttgtacgtcttcgacttcaccccacaaccctccaccaaacattcgtacatcggaaaac 646 ||||||| ||||| |||||||||||||||||||||||||||| || ||||| ||||||| Sbjct: 648 ttttgtagctcttcaacttcaccccacaaccctccaccaaacactcatacattggaaaac 589 Query: 647 cacgagcgacttttgcttggaagaaggaatcatgcgcctcagaaatatgaatactcagca 706 |||| || ||||||||||| || ||||||||||| ||||||||||||||||||||||||| Sbjct: 588 cacgggcaacttttgcttgaaaaaaggaatcatgtgcctcagaaatatgaatactcagca 529 Query: 707 gccttgatgttgggtacactcttgaacatacaga 740 ||||||| ||||| |||||||| |||||||||| Sbjct: 528 gccttgaagttggatacactctccaacatacaga 495
>gb|AC152996.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0010E20_PCR, complete sequence Length = 2483 Score = 133 bits (67), Expect = 9e-28 Identities = 94/103 (91%) Strand = Plus / Minus Query: 527 ttttgaagaattcaaatgagttaggaaattgatgcgtatcaacaagatgctgctgccgac 586 ||||||||||||||||||| || ||||| || ||| |||||| ||||||||||||||||| Sbjct: 1171 ttttgaagaattcaaatgacttgggaaactggtgcttatcaagaagatgctgctgccgac 1112 Query: 587 ttttgtacgtcttcgacttcaccccacaaccctccaccaaaca 629 ||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 1111 ttttgtagctcttcaacttcaccccacaaccctccaccaaaca 1069 Score = 129 bits (65), Expect = 1e-26 Identities = 92/101 (91%) Strand = Plus / Minus Query: 640 ggaaaaccacgagcgacttttgcttggaagaaggaatcatgcgcctcagaaatatgaata 699 ||||||||||| || ||||||||||| || ||||||||||| |||||||||||||||||| Sbjct: 737 ggaaaaccacgggcaacttttgcttgaaaaaaggaatcatgtgcctcagaaatatgaata 678 Query: 700 ctcagcagccttgatgttgggtacactcttgaacatacaga 740 |||||||||||||| ||||| |||||||| |||||||||| Sbjct: 677 ctcagcagccttgaagttggatacactctccaacatacaga 637
>gb|AC145306.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0010E20, complete sequence Length = 713 Score = 133 bits (67), Expect = 9e-28 Identities = 94/103 (91%) Strand = Plus / Minus Query: 527 ttttgaagaattcaaatgagttaggaaattgatgcgtatcaacaagatgctgctgccgac 586 ||||||||||||||||||| || ||||| || ||| |||||| ||||||||||||||||| Sbjct: 255 ttttgaagaattcaaatgacttgggaaactggtgcttatcaagaagatgctgctgccgac 196 Query: 587 ttttgtacgtcttcgacttcaccccacaaccctccaccaaaca 629 ||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 195 ttttgtagctcttcaacttcaccccacaaccctccaccaaaca 153
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 9e-28 Identities = 94/103 (91%) Strand = Plus / Minus Query: 527 ttttgaagaattcaaatgagttaggaaattgatgcgtatcaacaagatgctgctgccgac 586 ||||||||||||||||||| || ||||| || ||| |||||| ||||||||||||||||| Sbjct: 17129837 ttttgaagaattcaaatgacttgggaaactggtgcttatcaagaagatgctgctgccgac 17129778 Query: 587 ttttgtacgtcttcgacttcaccccacaaccctccaccaaaca 629 ||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 17129777 ttttgtagctcttcaacttcaccccacaaccctccaccaaaca 17129735 Score = 129 bits (65), Expect = 1e-26 Identities = 92/101 (91%) Strand = Plus / Minus Query: 640 ggaaaaccacgagcgacttttgcttggaagaaggaatcatgcgcctcagaaatatgaata 699 ||||||||||| || ||||||||||| || ||||||||||| |||||||||||||||||| Sbjct: 17129403 ggaaaaccacgggcaacttttgcttgaaaaaaggaatcatgtgcctcagaaatatgaata 17129344 Query: 700 ctcagcagccttgatgttgggtacactcttgaacatacaga 740 |||||||||||||| ||||| |||||||| |||||||||| Sbjct: 17129343 ctcagcagccttgaagttggatacactctccaacatacaga 17129303
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 9e-28 Identities = 94/103 (91%) Strand = Plus / Minus Query: 527 ttttgaagaattcaaatgagttaggaaattgatgcgtatcaacaagatgctgctgccgac 586 ||||||||||||||||||| || ||||| || ||| |||||| ||||||||||||||||| Sbjct: 17225023 ttttgaagaattcaaatgacttgggaaactggtgcttatcaagaagatgctgctgccgac 17224964 Query: 587 ttttgtacgtcttcgacttcaccccacaaccctccaccaaaca 629 ||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 17224963 ttttgtagctcttcaacttcaccccacaaccctccaccaaaca 17224921 Score = 129 bits (65), Expect = 1e-26 Identities = 92/101 (91%) Strand = Plus / Minus Query: 640 ggaaaaccacgagcgacttttgcttggaagaaggaatcatgcgcctcagaaatatgaata 699 ||||||||||| || ||||||||||| || ||||||||||| |||||||||||||||||| Sbjct: 17224589 ggaaaaccacgggcaacttttgcttgaaaaaaggaatcatgtgcctcagaaatatgaata 17224530 Query: 700 ctcagcagccttgatgttgggtacactcttgaacatacaga 740 |||||||||||||| ||||| |||||||| |||||||||| Sbjct: 17224529 ctcagcagccttgaagttggatacactctccaacatacaga 17224489
>gb|AC135569.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0018F17, complete sequence Length = 104291 Score = 129 bits (65), Expect = 1e-26 Identities = 92/101 (91%) Strand = Plus / Minus Query: 640 ggaaaaccacgagcgacttttgcttggaagaaggaatcatgcgcctcagaaatatgaata 699 ||||||||||| || ||||||||||| || ||||||||||| |||||||||||||||||| Sbjct: 103864 ggaaaaccacgggcaacttttgcttgaaaaaaggaatcatgtgcctcagaaatatgaata 103805 Query: 700 ctcagcagccttgatgttgggtacactcttgaacatacaga 740 |||||||||||||| ||||| |||||||| |||||||||| Sbjct: 103804 ctcagcagccttgaagttggatacactctccaacatacaga 103764 Score = 119 bits (60), Expect = 1e-23 Identities = 87/96 (90%) Strand = Plus / Minus Query: 534 gaattcaaatgagttaggaaattgatgcgtatcaacaagatgctgctgccgacttttgta 593 |||||||||||| || ||||| || ||| |||||| |||||||||||||||||||||||| Sbjct: 104291 gaattcaaatgacttgggaaactggtgcttatcaagaagatgctgctgccgacttttgta 104232 Query: 594 cgtcttcgacttcaccccacaaccctccaccaaaca 629 ||||| |||||||||||||||||||||||||||| Sbjct: 104231 gctcttcaacttcaccccacaaccctccaccaaaca 104196
>gb|BT019036.1| Zea mays clone Contig553.F mRNA sequence Length = 1202 Score = 101 bits (51), Expect = 3e-18 Identities = 177/219 (80%) Strand = Plus / Minus Query: 522 tgcccttttgaagaattcaaatgagttaggaaattgatgcgtatcaacaagatgctgctg 581 |||| ||||||| || |||||||| || ||||| |||||| |||| | | | ||||||| Sbjct: 674 tgcctttttgaaaaactcaaatgatttgggaaactgatgcttatcgatgaaaagctgctg 615 Query: 582 ccgacttttgtacgtcttcgacttcaccccacaaccctccaccaaacattcgtacatcgg 641 ||| || ||| | ||||| | |||| |||||||||||| ||||||| |||||||| || Sbjct: 614 ccggctcttggaactcttcaatttcataccacaaccctcccccaaacactcgtacattgg 555 Query: 642 aaaaccacgagcgacttttgcttggaagaaggaatcatgcgcctcagaaatatgaatact 701 ||||||||| || |||||||||||||| | || || |||| |||||||| ||| || || Sbjct: 554 aaaaccacgggcaacttttgcttggaaatacgagtcgtgcgtctcagaaacatggatgct 495 Query: 702 cagcagccttgatgttgggtacactcttgaacatacaga 740 ||||| |||||| ||||| || |||| || |||||||| Sbjct: 494 cagcaaccttgaagttggataaactcgcgagcatacaga 456 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 241 tcatcaatcttctgttccacctccat 266 |||||||||||||| ||||||||||| Sbjct: 895 tcatcaatcttctgctccacctccat 870 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 449 tatcccttgtctcttccccctt 470 |||||||||||||||||||||| Sbjct: 747 tatcccttgtctcttccccctt 726
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 271 ctctccttggcctccttctggtg 293 ||||||||||||||||||||||| Sbjct: 2752928 ctctccttggcctccttctggtg 2752950
>gb|AC084540.1|CBRG26M15 Caenorhabditis briggsae cosmid G26M15, complete sequence Length = 20553 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 295 ttttcattttctctcggctcctt 317 ||||||||||||||||||||||| Sbjct: 7071 ttttcattttctctcggctcctt 7049
>gb|AC101854.8| Mus musculus chromosome 1, clone RP23-298H18, complete sequence Length = 190474 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 134 taatagaccttgggacaaaagtaag 158 ||||||||||||| ||||||||||| Sbjct: 152075 taatagaccttggcacaaaagtaag 152051
>gb|AC116591.4| Mus musculus BAC clone RP24-90K1 from chromosome 14, complete sequence Length = 237561 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 tccaagtacaatgggaaatcc 63 ||||||||||||||||||||| Sbjct: 38403 tccaagtacaatgggaaatcc 38423
>gb|AC133203.3| Mus musculus BAC clone RP23-85M7 from chromosome 15, complete sequence Length = 227133 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 529 ttgaagaattcaaatgagtta 549 ||||||||||||||||||||| Sbjct: 117948 ttgaagaattcaaatgagtta 117968
>ref|XM_747639.1| Aspergillus fumigatus Af293 oligopeptide transporter, OPT family (Afu1g13620) partial mRNA Length = 2532 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 attgtcaatttgcttctggct 112 ||||||||||||||||||||| Sbjct: 2488 attgtcaatttgcttctggct 2508
>emb|CT009558.5| M.truncatula DNA sequence from clone MTH2-72I11 on chromosome 3, complete sequence Length = 145085 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 349 ccatcatgttcattttctttc 369 ||||||||||||||||||||| Sbjct: 110044 ccatcatgttcattttctttc 110064
>emb|BX649606.1| Aspergillus fumigatus BAC pilot project supercontig; segment 2/3 Length = 348551 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 attgtcaatttgcttctggct 112 ||||||||||||||||||||| Sbjct: 321347 attgtcaatttgcttctggct 321327
>gb|AC055731.22| Homo sapiens 3 BAC RP11-588D3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152537 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 716 ttgggtacactcttgaacata 736 ||||||||||||||||||||| Sbjct: 31157 ttgggtacactcttgaacata 31177
>gb|AC025155.20| Homo sapiens 3 BAC RP11-487M24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 40307 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 682 gcctcagaaatatgaatactc 702 ||||||||||||||||||||| Sbjct: 37760 gcctcagaaatatgaatactc 37780 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,176,017 Number of Sequences: 3902068 Number of extensions: 7176017 Number of successful extensions: 136320 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 136156 Number of HSP's gapped (non-prelim): 164 length of query: 740 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 717 effective length of database: 17,143,297,704 effective search space: 12291744453768 effective search space used: 12291744453768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
