ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066591.1| Oryza sativa (japonica cultivar-group) cDNA clon... 400 e-108
2ref|XM_470256.1| Oryza sativa (japonica cultivar-group), predic... 396 e-107
3gb|AY112221.1| Zea mays CL58622_1 mRNA sequence 244 2e-61
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 212 7e-52
5gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome... 212 7e-52
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 212 7e-52
7gb|AF333066.1| Anguillid herpesvirus polymerase gene, partial cds 42 1.4
8emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 42 1.4
9ref|XM_468503.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
10ref|XM_463635.1| Oryza sativa (japonica cultivar-group), predic... 40 5.6
11ref|XM_463632.1| Oryza sativa (japonica cultivar-group), predic... 40 5.6
12gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 5.6
13ref|XM_581852.2| PREDICTED: Bos taurus similar to Epsin-3 (EPS-1... 40 5.6
14emb|X61927.1|PCPPC1 P.cepacia plasmid PPC1 DNA 40 5.6
15gb|BC112775.1| Bos taurus similar to Epsin-3 (EPS-15 interacting... 40 5.6
16emb|AL645803.19| Mouse DNA sequence from clone RP23-119N24 on ch... 40 5.6
17emb|BX842584.1| Mycobacterium tuberculosis H37Rv complete genome... 40 5.6
18emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 5.6
19dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
20gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.6
21gb|AC008860.7| Homo sapiens chromosome 5 clone CTD-2185A1, compl... 40 5.6
22gb|AC008577.7| Homo sapiens chromosome 5 clone CTC-558D17, compl... 40 5.6
23gb|AC011208.5|AC011208 Homo sapiens chromosome 18, clone RP11-13... 40 5.6
24dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
25dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
26dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
27dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
28dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
29dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
30dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
31gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.6
32gb|AC112204.2| Homo sapiens chromosome 5 clone RP11-79C6, comple... 40 5.6
33dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
34gb|AE004994.1| Halobacterium sp. NRC-1 section 25 of 170 of the ... 40 5.6
35ref|XM_561331.1| Anopheles gambiae str. PEST ENSANGP00000025558 ... 40 5.6
36dbj|AK099149.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
37dbj|AK099125.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
38dbj|AK071688.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
39dbj|AK069159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
40dbj|AK060332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
41dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
42gb|AY859695.1| Mycobacterium conceptionae CIP 108544 RNA polymer... 40 5.6
43gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 5.6
44gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
45emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.6
46emb|AL606654.3|OSJN00100 Oryza sativa genomic DNA, chromosome 4,... 40 5.6
47gb|AD000012.1|MSGY126 Mycobacterium tuberculosis sequence from c... 40 5.6 
>dbj|AK066591.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073D03, full
            insert sequence
          Length = 1341

 Score =  400 bits (202), Expect = e-108
 Identities = 295/326 (90%)
 Strand = Plus / Minus

                                                                        
Query: 82   agttacaagttgtcgtgctcgatgacctgcgcccccctccactcctcgccggggccgacg 141
            ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||  ||||
Sbjct: 1127 agttacaggttgtcgtgctcgatgacctgcgccgccctccactcctcgccggggttgacg 1068

                                                                        
Query: 142  acgacgggcacgaggatggacgccggcccggtgcagaggaagtagtcgttgccgaacttg 201
            || || ||||| || |||||||||| ||||||||| ||||||||||| ||||||||||| 
Sbjct: 1067 accaccggcaccagcatggacgccgtcccggtgcacaggaagtagtccttgccgaacttc 1008

                                                                        
Query: 202  tcgtacattcctcctgggctgcccaggtacatgtcctcgaaccccatcctcacaagcctg 261
              ||||||  | || ||||||| |||||||||||||||| ||||||||||||| | ||||
Sbjct: 1007 ctgtacatctcccccgggctgcacaggtacatgtcctcgtaccccatcctcaccaccctg 948

                                                                        
Query: 262  aaccccagcccgctagactggtcgatggtggtgaacttggagggcgcggtgttgtagatg 321
            |||||||||||||||  ||| || ||||||||||| ||||||||||| ||| ||||||||
Sbjct: 947  aaccccagcccgctattctgatcaatggtggtgaatttggagggcgccgtgctgtagatg 888

                                                                        
Query: 322  cgcttcttcctctcctccggcggcgccgcgtacaccctgctcaccttcttcttgaggatg 381
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 887  cgcttcttcctctcctccggcggggccgcgtacaccctgctcaccttcttcttgaggatg 828

                                      
Query: 382  gtgtagaggttctcctccacggtcca 407
            ||||||||||| ||||||||||||||
Sbjct: 827  gtgtagaggttgtcctccacggtcca 802
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>ref|XM_470256.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1200

 Score =  396 bits (200), Expect = e-107
 Identities = 293/324 (90%)
 Strand = Plus / Minus

                                                                        
Query: 84   ttacaagttgtcgtgctcgatgacctgcgcccccctccactcctcgccggggccgacgac 143
            ||||| ||||||||||||||||||||||||| ||||||||||||||||||||  ||||||
Sbjct: 1200 ttacaggttgtcgtgctcgatgacctgcgccgccctccactcctcgccggggttgacgac 1141

                                                                        
Query: 144  gacgggcacgaggatggacgccggcccggtgcagaggaagtagtcgttgccgaacttgtc 203
             || ||||| || |||||||||| ||||||||| ||||||||||| |||||||||||   
Sbjct: 1140 caccggcaccagcatggacgccgtcccggtgcacaggaagtagtccttgccgaacttcct 1081

                                                                        
Query: 204  gtacattcctcctgggctgcccaggtacatgtcctcgaaccccatcctcacaagcctgaa 263
            ||||||  | || ||||||| |||||||||||||||| ||||||||||||| | ||||||
Sbjct: 1080 gtacatctcccccgggctgcacaggtacatgtcctcgtaccccatcctcaccaccctgaa 1021

                                                                        
Query: 264  ccccagcccgctagactggtcgatggtggtgaacttggagggcgcggtgttgtagatgcg 323
            |||||||||||||  ||| || ||||||||||| ||||||||||| ||| ||||||||||
Sbjct: 1020 ccccagcccgctattctgatcaatggtggtgaatttggagggcgccgtgctgtagatgcg 961

                                                                        
Query: 324  cttcttcctctcctccggcggcgccgcgtacaccctgctcaccttcttcttgaggatggt 383
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 960  cttcttcctctcctccggcggggccgcgtacaccctgctcaccttcttcttgaggatggt 901

                                    
Query: 384  gtagaggttctcctccacggtcca 407
            ||||||||| ||||||||||||||
Sbjct: 900  gtagaggttgtcctccacggtcca 877
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>gb|AY112221.1| Zea mays CL58622_1 mRNA sequence
          Length = 883

 Score =  244 bits (123), Expect = 2e-61
 Identities = 225/262 (85%)
 Strand = Plus / Plus

                                                                       
Query: 86  acaagttgtcgtgctcgatgacctgcgcccccctccactcctcgccggggccgacgacga 145
           |||||||||| ||||| |||||||||||| || |||||||||||||||||  |||||| |
Sbjct: 137 acaagttgtcatgctctatgacctgcgccgccttccactcctcgccggggttgacgacaa 196

                                                                       
Query: 146 cgggcacgaggatggacgccggcccggtgcagaggaagtagtcgttgccgaacttgtcgt 205
           ||||||| |  |||||||||  ||| ||||| || |||||||| |||||||||||| |||
Sbjct: 197 cgggcaccaacatggacgccatccccgtgcacagaaagtagtccttgccgaacttggcgt 256

                                                                       
Query: 206 acattcctcctgggctgcccaggtacatgtcctcgaaccccatcctcacaagcctgaacc 265
           |||| ||||| |||||||  ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 257 acatgcctcccgggctgcagaggtacatgtcctcgaaccccatcctcaccagcctgaacc 316

                                                                       
Query: 266 ccagcccgctagactggtcgatggtggtgaacttggagggcgcggtgttgtagatgcgct 325
           | ||||||||| |||| |||||       |||||||| ||||||||| |||||| |||||
Sbjct: 317 cgagcccgctatactgatcgatnnnnnnnaacttggacggcgcggtgctgtagacgcgct 376

                                 
Query: 326 tcttcctctcctccggcggcgc 347
           ||||||||||||||  ||||||
Sbjct: 377 tcttcctctcctccnncggcgc 398
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  212 bits (107), Expect = 7e-52
 Identities = 173/195 (88%)
 Strand = Plus / Plus

                                                                           
Query: 82      agttacaagttgtcgtgctcgatgacctgcgcccccctccactcctcgccggggccgacg 141
               ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||  ||||
Sbjct: 3102212 agttacaggttgtcgtgctcgatgacctgcgccgccctccactcctcgccggggttgacg 3102271

                                                                           
Query: 142     acgacgggcacgaggatggacgccggcccggtgcagaggaagtagtcgttgccgaacttg 201
               || || ||||| || |||||||||| ||||||||| ||||||||||| ||||||||||| 
Sbjct: 3102272 accaccggcaccagcatggacgccgtcccggtgcacaggaagtagtccttgccgaacttc 3102331

                                                                           
Query: 202     tcgtacattcctcctgggctgcccaggtacatgtcctcgaaccccatcctcacaagcctg 261
                 ||||||  | || ||||||| |||||||||||||||| ||||||||||||| | ||||
Sbjct: 3102332 ctgtacatctcccccgggctgcacaggtacatgtcctcgtaccccatcctcaccaccctg 3102391

                              
Query: 262     aaccccagcccgcta 276
               |||||||||||||||
Sbjct: 3102392 aaccccagcccgcta 3102406



 Score =  202 bits (102), Expect = 7e-49
 Identities = 117/122 (95%)
 Strand = Plus / Plus

                                                                           
Query: 286     atggtggtgaacttggagggcgcggtgttgtagatgcgcttcttcctctcctccggcggc 345
               ||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| 
Sbjct: 3102905 atggtggtgaatttggagggcgccgtgctgtagatgcgcttcttcctctcctccggcggg 3102964

                                                                           
Query: 346     gccgcgtacaccctgctcaccttcttcttgaggatggtgtagaggttctcctccacggtc 405
               ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3102965 gccgcgtacaccctgctcaccttcttcttgaggatggtgtagaggttgtcctccacggtc 3103024

                 
Query: 406     ca 407
               ||
Sbjct: 3103025 ca 3103026



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 320      tgcgcttcttcctctcctcc 339
                ||||||||||||||||||||
Sbjct: 13764944 tgcgcttcttcctctcctcc 13764925
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>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05,
             complete sequence
          Length = 101799

 Score =  212 bits (107), Expect = 7e-52
 Identities = 173/195 (88%)
 Strand = Plus / Plus

                                                                         
Query: 82    agttacaagttgtcgtgctcgatgacctgcgcccccctccactcctcgccggggccgacg 141
             ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||  ||||
Sbjct: 25225 agttacaggttgtcgtgctcgatgacctgcgccgccctccactcctcgccggggttgacg 25284

                                                                         
Query: 142   acgacgggcacgaggatggacgccggcccggtgcagaggaagtagtcgttgccgaacttg 201
             || || ||||| || |||||||||| ||||||||| ||||||||||| ||||||||||| 
Sbjct: 25285 accaccggcaccagcatggacgccgtcccggtgcacaggaagtagtccttgccgaacttc 25344

                                                                         
Query: 202   tcgtacattcctcctgggctgcccaggtacatgtcctcgaaccccatcctcacaagcctg 261
               ||||||  | || ||||||| |||||||||||||||| ||||||||||||| | ||||
Sbjct: 25345 ctgtacatctcccccgggctgcacaggtacatgtcctcgtaccccatcctcaccaccctg 25404

                            
Query: 262   aaccccagcccgcta 276
             |||||||||||||||
Sbjct: 25405 aaccccagcccgcta 25419



 Score =  202 bits (102), Expect = 7e-49
 Identities = 117/122 (95%)
 Strand = Plus / Plus

                                                                         
Query: 286   atggtggtgaacttggagggcgcggtgttgtagatgcgcttcttcctctcctccggcggc 345
             ||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| 
Sbjct: 25918 atggtggtgaatttggagggcgccgtgctgtagatgcgcttcttcctctcctccggcggg 25977

                                                                         
Query: 346   gccgcgtacaccctgctcaccttcttcttgaggatggtgtagaggttctcctccacggtc 405
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 25978 gccgcgtacaccctgctcaccttcttcttgaggatggtgtagaggttgtcctccacggtc 26037

               
Query: 406   ca 407
             ||
Sbjct: 26038 ca 26039
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  212 bits (107), Expect = 7e-52
 Identities = 173/195 (88%)
 Strand = Plus / Plus

                                                                           
Query: 82      agttacaagttgtcgtgctcgatgacctgcgcccccctccactcctcgccggggccgacg 141
               ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||  ||||
Sbjct: 3102323 agttacaggttgtcgtgctcgatgacctgcgccgccctccactcctcgccggggttgacg 3102382

                                                                           
Query: 142     acgacgggcacgaggatggacgccggcccggtgcagaggaagtagtcgttgccgaacttg 201
               || || ||||| || |||||||||| ||||||||| ||||||||||| ||||||||||| 
Sbjct: 3102383 accaccggcaccagcatggacgccgtcccggtgcacaggaagtagtccttgccgaacttc 3102442

                                                                           
Query: 202     tcgtacattcctcctgggctgcccaggtacatgtcctcgaaccccatcctcacaagcctg 261
                 ||||||  | || ||||||| |||||||||||||||| ||||||||||||| | ||||
Sbjct: 3102443 ctgtacatctcccccgggctgcacaggtacatgtcctcgtaccccatcctcaccaccctg 3102502

                              
Query: 262     aaccccagcccgcta 276
               |||||||||||||||
Sbjct: 3102503 aaccccagcccgcta 3102517



 Score =  202 bits (102), Expect = 7e-49
 Identities = 117/122 (95%)
 Strand = Plus / Plus

                                                                           
Query: 286     atggtggtgaacttggagggcgcggtgttgtagatgcgcttcttcctctcctccggcggc 345
               ||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| 
Sbjct: 3103016 atggtggtgaatttggagggcgccgtgctgtagatgcgcttcttcctctcctccggcggg 3103075

                                                                           
Query: 346     gccgcgtacaccctgctcaccttcttcttgaggatggtgtagaggttctcctccacggtc 405
               ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3103076 gccgcgtacaccctgctcaccttcttcttgaggatggtgtagaggttgtcctccacggtc 3103135

                 
Query: 406     ca 407
               ||
Sbjct: 3103136 ca 3103137



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 320      tgcgcttcttcctctcctcc 339
                ||||||||||||||||||||
Sbjct: 13759919 tgcgcttcttcctctcctcc 13759900
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>gb|AF333066.1| Anguillid herpesvirus polymerase gene, partial cds
          Length = 463

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 375 gaggatggtgtagaggttctc 395
           |||||||||||||||||||||
Sbjct: 172 gaggatggtgtagaggttctc 152
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 127     tcgccggggccgacgacgacg 147
               |||||||||||||||||||||
Sbjct: 1435716 tcgccggggccgacgacgacg 1435696
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>ref|XM_468503.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2037

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 cgccggggccgacgacgacg 147
           ||||||||||||||||||||
Sbjct: 213 cgccggggccgacgacgacg 232
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>ref|XM_463635.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 324  cttcttcctctcctccggcg 343
            ||||||||||||||||||||
Sbjct: 1047 cttcttcctctcctccggcg 1028
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>ref|XM_463632.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1110

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 324  cttcttcctctcctccggcggcgc 347
            |||||||||| |||||||||||||
Sbjct: 1029 cttcttcctcccctccggcggcgc 1006
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 134     ggccgacgacgacgggcacg 153
               ||||||||||||||||||||
Sbjct: 4220932 ggccgacgacgacgggcacg 4220951
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>ref|XM_581852.2| PREDICTED: Bos taurus similar to Epsin-3 (EPS-15 interacting
           protein 3) (LOC538660), mRNA
          Length = 1908

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 377 ggatggtgtagaggttctcc 396
           ||||||||||||||||||||
Sbjct: 310 ggatggtgtagaggttctcc 291
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>emb|X61927.1|PCPPC1 P.cepacia plasmid PPC1 DNA
          Length = 1641

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 95  cgtgctcgatgacctgcgcc 114
           ||||||||||||||||||||
Sbjct: 291 cgtgctcgatgacctgcgcc 272
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>gb|BC112775.1| Bos taurus similar to Epsin-3 (EPS-15 interacting protein 3), mRNA
           (cDNA clone MGC:137304 IMAGE:8179488), complete cds
          Length = 2598

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 377 ggatggtgtagaggttctcc 396
           ||||||||||||||||||||
Sbjct: 690 ggatggtgtagaggttctcc 671
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>emb|AL645803.19| Mouse DNA sequence from clone RP23-119N24 on chromosome 11 Contains the
             5' end of the Ddc gene for dopa decarboxylase, a novel
             gene and the 3' end of the Grb10 gene for growth factor
             receptor bound protein 10, complete sequence
          Length = 128744

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    tttgagaatgtacatgattt 48
             ||||||||||||||||||||
Sbjct: 30952 tttgagaatgtacatgattt 30971
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>emb|BX842584.1| Mycobacterium tuberculosis H37Rv complete genome; segment 13/13
          Length = 244800

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   ggccgacgacgacgggcacg 153
             ||||||||||||||||||||
Sbjct: 61887 ggccgacgacgacgggcacg 61906
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>emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             14/14
          Length = 278492

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   ggccgacgacgacgggcacg 153
             ||||||||||||||||||||
Sbjct: 97914 ggccgacgacgacgggcacg 97933
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>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OJ1485_B09
          Length = 66599

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 324  cttcttcctctcctccggcg 343
            ||||||||||||||||||||
Sbjct: 5433 cttcttcctctcctccggcg 5414
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>gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0048D11, from chromosome 3, complete sequence
          Length = 158911

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   tgcgcttcttcctctcctcc 339
             ||||||||||||||||||||
Sbjct: 41472 tgcgcttcttcctctcctcc 41453
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>gb|AC008860.7| Homo sapiens chromosome 5 clone CTD-2185A1, complete sequence
          Length = 105885

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 359   tgctcaccttcttcttgaggatggtgta 386
             |||||| ||| |||||||||||||||||
Sbjct: 77846 tgctcaactttttcttgaggatggtgta 77873
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>gb|AC008577.7| Homo sapiens chromosome 5 clone CTC-558D17, complete sequence
          Length = 77686

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   cctcgaaccccatcctcaca 255
             ||||||||||||||||||||
Sbjct: 40351 cctcgaaccccatcctcaca 40370
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>gb|AC011208.5|AC011208 Homo sapiens chromosome 18, clone RP11-131K21, complete sequence
          Length = 181602

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   aagcctgaaccccagcccgc 274
             ||||||||||||||||||||
Sbjct: 89204 aagcctgaaccccagcccgc 89185
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 170     cggtgcagaggaagtagtcg 189
               ||||||||||||||||||||
Sbjct: 4200788 cggtgcagaggaagtagtcg 4200807
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 324      cttcttcctctcctccggcg 343
                ||||||||||||||||||||
Sbjct: 22977256 cttcttcctctcctccggcg 22977237
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 329      tcctctcctccggcggcgcc 348
                ||||||||||||||||||||
Sbjct: 26217560 tcctctcctccggcggcgcc 26217579
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 128      cgccggggccgacgacgacg 147
                ||||||||||||||||||||
Sbjct: 35572573 cgccggggccgacgacgacg 35572592
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 324      cttcttcctctcctccggcg 343
                ||||||||||||||||||||
Sbjct: 40206481 cttcttcctctcctccggcg 40206462



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 324      cttcttcctctcctccggcggcgc 347
                |||||||||| |||||||||||||
Sbjct: 40196869 cttcttcctcccctccggcggcgc 40196846
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>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0678F11
          Length = 154292

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 324    cttcttcctctcctccggcg 343
              ||||||||||||||||||||
Sbjct: 149565 cttcttcctctcctccggcg 149546



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 324    cttcttcctctcctccggcggcgc 347
              |||||||||| |||||||||||||
Sbjct: 139953 cttcttcctcccctccggcggcgc 139930
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>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1793G04
          Length = 156714

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   cttcttcctctcctccggcg 343
             ||||||||||||||||||||
Sbjct: 72259 cttcttcctctcctccggcg 72240



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 324   cttcttcctctcctccggcggcgc 347
             |||||||||| |||||||||||||
Sbjct: 62647 cttcttcctcccctccggcggcgc 62624
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 338    ccggcggcgccgcgtacacc 357
              ||||||||||||||||||||
Sbjct: 316851 ccggcggcgccgcgtacacc 316870
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>gb|AC112204.2| Homo sapiens chromosome 5 clone RP11-79C6, complete sequence
          Length = 165304

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 359    tgctcaccttcttcttgaggatggtgta 386
              |||||| ||| |||||||||||||||||
Sbjct: 112776 tgctcaactttttcttgaggatggtgta 112749
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>dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0452F04
          Length = 171421

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   cgccggggccgacgacgacg 147
             ||||||||||||||||||||
Sbjct: 88965 cgccggggccgacgacgacg 88984
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>gb|AE004994.1| Halobacterium sp. NRC-1 section 25 of 170 of the complete genome
          Length = 15274

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 123  ctcctcgccggggccgacga 142
            ||||||||||||||||||||
Sbjct: 7360 ctcctcgccggggccgacga 7341
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>ref|XM_561331.1| Anopheles gambiae str. PEST ENSANGP00000025558
           (ENSANGG00000023121), partial mRNA
          Length = 1167

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 89  agttgtcgtgctcgatgacc 108
           ||||||||||||||||||||
Sbjct: 661 agttgtcgtgctcgatgacc 642
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>dbj|AK099149.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063C05, full
           insert sequence
          Length = 934

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 324 cttcttcctctcctccggcg 343
           ||||||||||||||||||||
Sbjct: 76  cttcttcctctcctccggcg 95
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>dbj|AK099125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044P12, full
           insert sequence
          Length = 927

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 324 cttcttcctctcctccggcg 343
           ||||||||||||||||||||
Sbjct: 73  cttcttcctctcctccggcg 92
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>dbj|AK071688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113H16, full
            insert sequence
          Length = 1334

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 324  cttcttcctctcctccggcg 343
            ||||||||||||||||||||
Sbjct: 1075 cttcttcctctcctccggcg 1056
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>dbj|AK069159.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007N07, full
           insert sequence
          Length = 2037

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 cgccggggccgacgacgacg 147
           ||||||||||||||||||||
Sbjct: 213 cgccggggccgacgacgacg 232
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>dbj|AK060332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-B07, full
           insert sequence
          Length = 952

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 324 cttcttcctctcctccggcg 343
           ||||||||||||||||||||
Sbjct: 76  cttcttcctctcctccggcg 95
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>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E12
          Length = 152448

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 329    tcctctcctccggcggcgcc 348
              ||||||||||||||||||||
Sbjct: 109418 tcctctcctccggcggcgcc 109437
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>gb|AY859695.1| Mycobacterium conceptionae CIP 108544 RNA polymerase subunit B (rpoB)
            gene, complete cds
          Length = 3934

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 342  cggcgccgcgtacaccctgc 361
            ||||||||||||||||||||
Sbjct: 3425 cggcgccgcgtacaccctgc 3444
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 320     tgcgcttcttcctctcctccggcg 343
               ||||||||||||| ||||||||||
Sbjct: 1483557 tgcgcttcttcctgtcctccggcg 1483534
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 324      cttcttcctctcctccggcg 343
                ||||||||||||||||||||
Sbjct: 22905447 cttcttcctctcctccggcg 22905428
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>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 155568

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   cttcttcctctcctccggcg 343
             ||||||||||||||||||||
Sbjct: 86533 cttcttcctctcctccggcg 86514
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>emb|AL606654.3|OSJN00100 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18,
             complete sequence
          Length = 132854

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   cggtgcagaggaagtagtcg 189
             ||||||||||||||||||||
Sbjct: 43852 cggtgcagaggaagtagtcg 43871
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>gb|AD000012.1|MSGY126 Mycobacterium tuberculosis sequence from clone y126
          Length = 37164

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   ggccgacgacgacgggcacg 153
             ||||||||||||||||||||
Sbjct: 15268 ggccgacgacgacgggcacg 15287


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,537,425
Number of Sequences: 3902068
Number of extensions: 3537425
Number of successful extensions: 86340
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85497
Number of HSP's gapped (non-prelim): 838
length of query: 420
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 398
effective length of database: 17,147,199,772
effective search space: 6824585509256
effective search space used: 6824585509256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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