>RL4_PRUAR (Q9XF97) 60S ribosomal protein L4 (L1)|
          Length = 408

 Score =  176 bits (445), Expect = 5e-44
 Identities = 88/126 (69%), Positives = 102/126 (80%)
 Frame = -3

Query: 563 KKKGFVLPRPKMTNADLGRLINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYF 384
           KK G+VLPR KM NADL R+INSDEVQSVV PI +  KR   +KNPL+    +LKLNPY 
Sbjct: 281 KKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYA 340

Query: 383 GTARRMAVLAEAARVKARKDKINSKRTKLSAEEASKIKAAGKAWYQTMISDSDYTEFDVF 204
            TARRM++LAEA RVKA+K+K++ KR  +S EEAS IKAAGKAWYQTMISDSDYTEFD F
Sbjct: 341 KTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNF 400

Query: 203 SKWLGV 186
           +KWLGV
Sbjct: 401 TKWLGV 406

>RL4B_ARATH (Q9SF40) 60S ribosomal protein L4-2 (L1)|
          Length = 406

 Score =  175 bits (443), Expect = 9e-44
 Identities = 85/125 (68%), Positives = 102/125 (81%)
 Frame = -3

Query: 563 KKKGFVLPRPKMTNADLGRLINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYF 384
           KKKG+VLPR KM NADL R+INSDE+QSVV PI K+ KR   +KNPLKN   +LKLNPY 
Sbjct: 279 KKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYA 338

Query: 383 GTARRMAVLAEAARVKARKDKINSKRTKLSAEEASKIKAAGKAWYQTMISDSDYTEFDVF 204
            TA+RM++LAEA RVKA+K+K+  KR  ++ EEA  IKAAGK+WY+TMISDSDYTEFD F
Sbjct: 339 KTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNF 398

Query: 203 SKWLG 189
           +KWLG
Sbjct: 399 TKWLG 403

>RL4A_ARATH (P49691) 60S ribosomal protein L4-1 (L1)|
          Length = 407

 Score =  174 bits (440), Expect = 2e-43
 Identities = 86/125 (68%), Positives = 100/125 (80%)
 Frame = -3

Query: 563 KKKGFVLPRPKMTNADLGRLINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYF 384
           KKKG+VLPR KM NADL R+INSDEVQSVV PI    KR   +KNPLKN   + KLNPY 
Sbjct: 280 KKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYA 339

Query: 383 GTARRMAVLAEAARVKARKDKINSKRTKLSAEEASKIKAAGKAWYQTMISDSDYTEFDVF 204
            TA+RM++LAEA+RVKA+K+K+  KR  ++ EEA  IKAAGKAWYQTMISDSDYTEFD F
Sbjct: 340 KTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNF 399

Query: 203 SKWLG 189
           +KWLG
Sbjct: 400 TKWLG 404

>RL4B_XENLA (P02385) 60S ribosomal protein L4-B (L1B) (Fragment)|
          Length = 396

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 42/97 (43%), Positives = 61/97 (62%)
 Frame = -3

Query: 560 KKGFVLPRPKMTNADLGRLINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYFG 381
           K  + LP  KMTN DL R++ S E+Q  ++  NK+VKRRE +KNPLKN   +++LNPY  
Sbjct: 273 KADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAK 332

Query: 380 TARRMAVLAEAARVKARKDKINSKRTKLSAEEASKIK 270
           TARR A+L +   +KA++ K +  + K      +K K
Sbjct: 333 TARRHAILQQLENIKAKEKKPDDGKPKAKKPLDAKTK 369

>RL4A_XENLA (P08429) 60S ribosomal protein L4-A (L1A)|
          Length = 396

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 42/97 (43%), Positives = 61/97 (62%)
 Frame = -3

Query: 560 KKGFVLPRPKMTNADLGRLINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYFG 381
           K  + LP  KMTN DL R++ S E+Q  ++  NK+VKRRE +KNPLKN   +++LNPY  
Sbjct: 278 KADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAK 337

Query: 380 TARRMAVLAEAARVKARKDKINSKRTKLSAEEASKIK 270
           TARR A+L +   +KA++ K +  + K      +K K
Sbjct: 338 TARRHAILQQLENIKAKEKKPDDGKPKAKKPLDAKTK 374

>RL4_HUMAN (P36578) 60S ribosomal protein L4 (L1)|
          Length = 426

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 43/103 (41%), Positives = 57/103 (55%)
 Frame = -3

Query: 566 SKKKGFVLPRPKMTNADLGRLINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPY 387
           S K  + LP  KM N DL R++ S E+Q  ++   K++ RR  +KNPLKN   +LKLNPY
Sbjct: 271 SLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPY 330

Query: 386 FGTARRMAVLAEAARVKARKDKINSKRTKLSAEEASKIKAAGK 258
             T RR  +L +A   K R DK  +    L A+   K   AGK
Sbjct: 331 AKTMRRNTILRQARNHKLRVDKAAAAAAALQAKSDEKAAVAGK 373

>RL4_URECA (P49165) 60S ribosomal protein L4 (L1)|
          Length = 386

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 40/103 (38%), Positives = 63/103 (61%)
 Frame = -3

Query: 566 SKKKGFVLPRPKMTNADLGRLINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPY 387
           ++K  + LP PKMTN DL RL+ SDE+Q+ ++   K+  RR  +KNPLKN   +++LNP+
Sbjct: 271 AEKSHYNLPMPKMTNTDLSRLLKSDEIQNALREPKKDKARRLQKKNPLKNYRVMMRLNPF 330

Query: 386 FGTARRMAVLAEAARVKARKDKINSKRTKLSAEEASKIKAAGK 258
            G  +  A   E  R+K ++ K++ KR       A+ ++ AGK
Sbjct: 331 AGAQKAAAKAVEQRRLKEKQAKLDQKR-----GIATPVEGAGK 368

>RL4_MOUSE (Q9D8E6) 60S ribosomal protein L4 (L1)|
          Length = 418

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 40/104 (38%), Positives = 57/104 (54%)
 Frame = -3

Query: 566 SKKKGFVLPRPKMTNADLGRLINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPY 387
           S K  + LP  KM N DL R++ S E+Q  ++   K++ RR  +KNPLKN   +LKLNPY
Sbjct: 271 SLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPY 330

Query: 386 FGTARRMAVLAEAARVKARKDKINSKRTKLSAEEASKIKAAGKA 255
             T RR  +L +A   K R  K+ +  T L+ +    +   G A
Sbjct: 331 AKTMRRNTILRQARNHKLRVKKLEAAATALATKSEKVVPEKGTA 374

>RL4_RAT (P50878) 60S ribosomal protein L4 (L1)|
          Length = 420

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 39/102 (38%), Positives = 56/102 (54%)
 Frame = -3

Query: 566 SKKKGFVLPRPKMTNADLGRLINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPY 387
           S K  + LP  KM N DL R++ S E+Q  ++   K++ RR  +KNPLKN   +LKLNPY
Sbjct: 271 SLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPY 330

Query: 386 FGTARRMAVLAEAARVKARKDKINSKRTKLSAEEASKIKAAG 261
             T RR  +L +A   K R  K+ +    L+A+    +   G
Sbjct: 331 AKTMRRNTILRQARNHKLRVKKLEAAAAALAAKSEKIVPEKG 372

>RL4_BOVIN (Q58DW0) 60S ribosomal protein L4|
          Length = 421

 Score = 73.6 bits (179), Expect = 4e-13
 Identities = 37/82 (45%), Positives = 49/82 (59%)
 Frame = -3

Query: 566 SKKKGFVLPRPKMTNADLGRLINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPY 387
           S K  + LP  KM N DL R++ S E+Q  ++   K++ RR  +KNPLKN   +LKLNPY
Sbjct: 271 SLKSNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPY 330

Query: 386 FGTARRMAVLAEAARVKARKDK 321
             T RR  +L +A   K R DK
Sbjct: 331 AKTMRRNTILRQARNHKIRMDK 352

>RL4_DROME (P09180) 60S ribosomal protein L4 (L1)|
          Length = 401

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
 Frame = -3

Query: 560 KKGFVLPRPKMTNADLGRLINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYFG 381
           KKG+ LP+PKM N DL RL+ S+E++ V++   K V R   R NPL N   ++KLNPY  
Sbjct: 277 KKGYNLPQPKMANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAE 336

Query: 380 TARRMAVLA----EAARVKARKDKINSKRTKLSAEEASKIKAAGKA 255
             +R A LA      A+V A+  K N +  K      +   AA +A
Sbjct: 337 VLKRRAALAAEKRTVAKVLAKAKKQNVELAKSHFANVATKAAANRA 382

>RL4_CANFA (Q28346) 60S ribosomal protein L4 (L1)|
          Length = 420

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 34/82 (41%), Positives = 45/82 (54%)
 Frame = -3

Query: 566 SKKKGFVLPRPKMTNADLGRLINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPY 387
           S K  + LP  KM N DL R++        ++   K++ RR  +KNPLKN   +LKLNPY
Sbjct: 271 SLKSNYNLPMHKMLNTDLSRILKMPRDPRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPY 330

Query: 386 FGTARRMAVLAEAARVKARKDK 321
             T RR  +L +A   K R DK
Sbjct: 331 AKTMRRNTILRQAKNHKLRMDK 352

>RL4B_SCHPO (Q9P784) 60S ribosomal protein L4-B|
          Length = 363

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 40/94 (42%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
 Frame = -3

Query: 560 KKGFVLPRPKMTNADLGRLINSDEVQSVVKPIN-KEVKRREA-RKNPLKNAAAVLKLNPY 387
           KK + LP   ++NAD+ RLINSDE+QS+VK      VKR    +KNPLKN A + +LNPY
Sbjct: 274 KKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPY 333

Query: 386 FGTARRMAVLAEAARVKARKDKINSKRTKLSAEE 285
                        A+      KINS++T  +A E
Sbjct: 334 -------------AKAYKANVKINSEKTPKAAGE 354

>RL4A_SCHPO (P35679) 60S ribosomal protein L4-A (L2)|
          Length = 363

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
 Frame = -3

Query: 560 KKGFVLPRPKMTNADLGRLINSDEVQSVVKPIN-KEVKRREA-RKNPLKNAAAVLKLNPY 387
           KK + LP   ++NAD+ RLINSDE+QS+VK      VKR    +KNPLKN A + +LNPY
Sbjct: 274 KKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPY 333

Query: 386 FGTARRMAVLAEAARVKARKDK 321
               +    L      KA  +K
Sbjct: 334 AKAYKANVKLNTGKTPKAAGEK 355

>RL4B_YEAST (P49626) 60S ribosomal protein L4-B (L2B) (RP2)|
          Length = 361

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
 Frame = -3

Query: 566 SKKKGFVLPRPKMTNADLGRLINSDEVQSVVKPINKEVKRRE--ARKNPLKNAAAVLKLN 393
           S K G+ LP   ++ +D+ R+INS E+QS ++P  +  ++R    +KNPLKN   +L+LN
Sbjct: 268 SSKVGYTLPSHIISTSDVTRIINSSEIQSAIRPAGQATQKRTHVLKKNPLKNKQVLLRLN 327

Query: 392 PY 387
           PY
Sbjct: 328 PY 329

>RL4A_YEAST (P10664) 60S ribosomal protein L4-A (L2A) (RP2)|
          Length = 361

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
 Frame = -3

Query: 566 SKKKGFVLPRPKMTNADLGRLINSDEVQSVVKPINKEVKRRE--ARKNPLKNAAAVLKLN 393
           S K G+ LP   ++ +D+ R+INS E+QS ++P  +  ++R    +KNPLKN   +L+LN
Sbjct: 268 SSKVGYTLPSHIISTSDVTRIINSSEIQSAIRPAGQATQKRTHVLKKNPLKNKQVLLRLN 327

Query: 392 PY 387
           PY
Sbjct: 328 PY 329

>RL4_XENTR (P14117) 60S ribosomal protein L4 (L1) (Fragment)|
          Length = 96

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 26/48 (54%), Positives = 34/48 (70%)
 Frame = -3

Query: 560 KKGFVLPRPKMTNADLGRLINSDEVQSVVKPINKEVKRREARKNPLKN 417
           K  + LP  KMTN DL R++ S E+Q  ++  NK+VKRRE +KNPLKN
Sbjct: 48  KADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKN 95

>RL4_CAEEL (O02056) 60S ribosomal protein L4|
          Length = 344

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 28/75 (37%), Positives = 39/75 (52%)
 Frame = -3

Query: 560 KKGFVLPRPKMTNADLGRLINSDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNPYFG 381
           KKG+ +P P M N+D  R+I S+EV   ++   K     +  +NPLK    + KLNPY  
Sbjct: 273 KKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPYAS 332

Query: 380 TARRMAVLAEAARVK 336
             R+    A  A VK
Sbjct: 333 ILRK----ASKANVK 343

>RL4_TRYBB (P49669) 60S ribosomal protein L4 (L1)|
          Length = 374

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
 Frame = -3

Query: 560 KKGFVLPRPKMTNADLGRLINSDEVQSVVKPINKEVKRREARKNP---LKNAAAVLKLNP 390
           K GF+LP P +T+ D+ R++ S+EV+ V+KP   + KR    + P   ++N    L+LNP
Sbjct: 272 KSGFMLPAPMLTSTDVTRIMQSEEVRRVLKPKKLQPKRPSRYRQPTNGIRNRRLRLRLNP 331

Query: 389 YFGTARRMAVLAEAARVKARKDKINSKRTKLSAEEASKIKAAGKA 255
           +    + MA        K  ++K N +     A  A+K+    KA
Sbjct: 332 FQKKEKAMA--------KGMQNKKNRE-----ARHAAKVVRLAKA 363

>H1B_STRPU (P15869) Histone H1-beta, late embryonic|
          Length = 211

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
 Frame = -3

Query: 563 KKKGFVLPRPKMTNADLGRLIN--SDEVQSVVKPINKEVKRREARKNPLKNAAAVLKLNP 390
           KK+   + R  +T  + G L+           K   K+  + +A+K P  +AA   KL  
Sbjct: 56  KKQAIFIKRALITGVEKGTLVQVKGKGASGSFKLGKKKEGKSDAQKAP--DAAKKAKL-- 111

Query: 389 YFGTARRMAVLAEAARVKARKDKINSKRTKLSAEEASKIKAAGKA 255
                ++ A   +AAR KA+K+K+ +K+      +  K  AA KA
Sbjct: 112 --AAKKKEAKEKKAARSKAKKEKLAAKKASKKTTKKVKKPAAKKA 154

>CDC27_HUMAN (P30260) Cell division cycle protein 27 homolog (CDC27Hs) (H-NUC)|
          Length = 824

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 4   VSKKASTDKTLEITSYQNSIRCLRLHNTTQ*QNHTLGSQR 123
           + +K   D+T + TS QN   CL    TTQ  NH+L  ++
Sbjct: 158 IGEKPDPDQTFKFTSLQNFSNCLPNSCTTQVPNHSLSHRQ 197

>TMPB_TREPH (P29720) Treponemal membrane protein B precursor (Antigen tmpB)|
          Length = 384

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -3

Query: 464 NKEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARKDKI-NSKRTKLSAE 288
           +K  K + A++   K+ AA  K       A+  A    AA+ KA KDK    +  + +AE
Sbjct: 190 DKAAKEKAAKEKAAKDKAAKEK------AAKEKAAREMAAKEKAAKDKAAKEEAARKAAE 243

Query: 287 EASKIKAAGKA 255
           EA+  KAA +A
Sbjct: 244 EAAARKAAEEA 254

>RL4_PIG (Q29187) 60S ribosomal protein L4 (L1) (Fragment)|
          Length = 101

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 404 LKLNPYFGTARRMAVLAEAARVKARKDKINSKRTK 300
           LKLNPY  T RR  +L +    K R DK  + + K
Sbjct: 1   LKLNPYAKTMRRNTILRQXRXHKIRMDKAAALKAK 35

>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)|
          Length = 4684

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
 Frame = -3

Query: 452  KRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARKDKINSK-------RTKLS 294
            K +E ++   +  + + +L      ARR A  AE ARV+A ++   S+       R K S
Sbjct: 2198 KEQELQQTLQQEQSVLDRLRGEAEAARRAAEEAEEARVQAEREAAQSRRQVEEAERLKQS 2257

Query: 293  AEEASKIKAAGKA 255
            AEE ++ +A  +A
Sbjct: 2258 AEEQAQARAQAQA 2270

>PARD3_RAT (Q9Z340) Partitioning-defective 3 homolog (PARD-3) (PAR-3) (Atypical|
            PKC isotype-specific-interacting protein) (ASIP)
            (Atypical PKC-specific-binding protein) (ASBP)
          Length = 1337

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 21/95 (22%), Positives = 40/95 (42%)
 Frame = -3

Query: 473  KPINKEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARKDKINSKRTKLS 294
            K   KE  + +A+K  LK    + +    FG  R+   + +  R+K +    + +     
Sbjct: 1001 KDREKEKDKLKAKKGMLKGLGDMFR----FGKHRKDDKMEKMGRIKIQDSFTSEEDRVRM 1056

Query: 293  AEEASKIKAAGKAWYQTMISDSDYTEFDVFSKWLG 189
             EE  +I+A  + + +    + DY E   F +  G
Sbjct: 1057 KEEQERIQAKTREFRERQARERDYAEIQDFHRTFG 1091

>Y1158_ARCFU (O29107) Hypothetical protein AF1158|
          Length = 112

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = -3

Query: 506 LINSDEVQSVVKPINKEVKRREA---RKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVK 336
           ++  D  + + K    E+K  EA    +   KN     K+      AR +   AEA  VK
Sbjct: 1   MVTMDRTEILEKIKQAEIKVEEAIRAAEEERKNKILEAKMK-----AREIIESAEAEAVK 55

Query: 335 ARKDKINSKRTKLSAEE 285
            ++D +NS R ++ AE+
Sbjct: 56  VKEDILNSARQQIEAEK 72

>PARD3_MOUSE (Q99NH2) Partitioning-defective 3 homolog (PARD-3) (PAR-3) (Atypical|
            PKC isotype-specific-interacting protein) (ASIP)
            (Ephrin-interacting protein) (PHIP)
          Length = 1333

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 21/95 (22%), Positives = 39/95 (41%)
 Frame = -3

Query: 473  KPINKEVKRREARKNPLKNAAAVLKLNPYFGTARRMAVLAEAARVKARKDKINSKRTKLS 294
            K   KE  + +A K  LK    + +    FG  R+   + +  R+K +    + +     
Sbjct: 997  KDREKEKDKLKANKGMLKGLGDMFR----FGKHRKDDKMEKMGRIKIQDSFTSEEDRVRM 1052

Query: 293  AEEASKIKAAGKAWYQTMISDSDYTEFDVFSKWLG 189
             EE  +I+A  + + +    + DY E   F +  G
Sbjct: 1053 KEEQERIQAKTREFRERQARERDYAEIQDFHRTFG 1087

>RAD50_CAEEL (O44199) DNA repair protein rad-50 (EC 3.6.-.-)|
          Length = 1298

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
 Frame = -3

Query: 452 KRREARKNPLKNAAAVLKLNPYFGTARRM-------------AVLAEAARVKARKDKINS 312
           K+ E  +  LK   +++++ PYFGT   +             +   E AR++ +  K N 
Sbjct: 272 KKTELERQNLKKQLSLIRVEPYFGTEEELKREIEEFRGSEGRSYGEERARIQKKIGKNNQ 331

Query: 311 KRTKLSAEE 285
           +R +LS ++
Sbjct: 332 ERQELSQKK 340


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,556,396
Number of Sequences: 219361
Number of extensions: 986978
Number of successful extensions: 3131
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 3051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3123
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)