ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal3l01 |
|---|---|
| Clone Library Name | barley_pub |
>HOW_DROME (O01367) Protein held out wings (KH-domain protein KH93F) (Putative| RNA-binding protein) (Protein muscle-specific) (Protein wings held out) (Protein struthio) (Quaking-related 93F) Length = 405 Score = 71.6 bits (174), Expect = 2e-12 Identities = 35/81 (43%), Positives = 52/81 (64%) Frame = -1 Query: 602 RGSIKDPAREDMMRGKPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDES 423 +GS++D +ED RGKP +EHL++ LH+L+ E +L QA ++ LL P E Sbjct: 181 KGSMRDKKKEDANRGKPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEG 240 Query: 422 QDFFKKQQLRELAMLNGTLRE 360 +D KK+QL ELA++NGT R+ Sbjct: 241 EDELKKRQLMELAIINGTYRD 261
>GLD1_CAEEL (Q17339) Female germline-specific tumor suppressor gld-1 (Defective| in germ line development protein 1) Length = 463 Score = 66.6 bits (161), Expect = 5e-11 Identities = 33/80 (41%), Positives = 50/80 (62%) Frame = -1 Query: 602 RGSIKDPAREDMMRGKPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDES 423 +GS++D ++E RGK +EHL + LH+LV+ E + +L A E ++ LL P E Sbjct: 249 KGSMRDKSKESAHRGKANWEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEG 308 Query: 422 QDFFKKQQLRELAMLNGTLR 363 D K++QL ELA++NGT R Sbjct: 309 TDELKRKQLMELAIINGTYR 328
>KHDR3_RAT (Q9JLP1) KH domain-containing, RNA binding, signal| transduction-associated protein 3 (Sam68-like mammalian protein 2) (SLM-2) (rSLM-2) Length = 346 Score = 50.8 bits (120), Expect = 3e-06 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Frame = -1 Query: 602 RGSIKDPAREDMMR--GKPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMD 429 +GS++D A+E+ +R G+ Y HLN+ LH+L+E P AR+ A E ++ L P Sbjct: 100 KGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEDIKKFLIP-- 157 Query: 428 ESQDFFKKQQLRELAMLNG 372 + D ++ QL+EL LNG Sbjct: 158 DYNDEIRQAQLQELTYLNG 176
>KHDR3_MOUSE (Q9R226) KH domain-containing, RNA binding, signal| transduction-associated protein 3 (Sam68-like mammalian protein 2) (SLM-2) (RNA-binding protein Etoile) Length = 346 Score = 50.8 bits (120), Expect = 3e-06 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Frame = -1 Query: 602 RGSIKDPAREDMMR--GKPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMD 429 +GS++D A+E+ +R G+ Y HLN+ LH+L+E P AR+ A E ++ L P Sbjct: 100 KGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP-- 157 Query: 428 ESQDFFKKQQLRELAMLNG 372 + D ++ QL+EL LNG Sbjct: 158 DYNDEIRQAQLQELTYLNG 176
>KHDR3_HUMAN (O75525) KH domain-containing, RNA binding, signal| transduction-associated protein 3 (Sam68-like mammalian protein 2) (SLM-2) (Sam68-like phosphotyrosine protein) (RNA-binding protein T-Star) Length = 346 Score = 50.8 bits (120), Expect = 3e-06 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Frame = -1 Query: 602 RGSIKDPAREDMMR--GKPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMD 429 +GS++D A+E+ +R G+ Y HLN+ LH+L+E P AR+ A E ++ L P Sbjct: 100 KGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP-- 157 Query: 428 ESQDFFKKQQLRELAMLNG 372 + D ++ QL+EL LNG Sbjct: 158 DYNDEIRQAQLQELTYLNG 176
>SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) Length = 639 Score = 45.4 bits (106), Expect = 1e-04 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 4/86 (4%) Frame = -1 Query: 602 RGSIKDP--ARED--MMRGKPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRP 435 +GS+K+ R+D M+ G+ +EPLH LV A +E + + Q R IL+ + Sbjct: 180 KGSVKEGKVGRKDGQMLPGE------DEPLHALVTANT-MENVKKAVEQIRNILKQGIET 232 Query: 434 MDESQDFFKKQQLRELAMLNGTLREE 357 ++ D +K QLRELA LNGTLRE+ Sbjct: 233 PEDQNDL-RKMQLRELARLNGTLRED 257
>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) (CW17) Length = 653 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/60 (45%), Positives = 37/60 (61%) Frame = -1 Query: 536 NEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLNGTLREE 357 +EPLH LV A +E + + Q R IL+ + ++ D +K QLRELA LNGTLRE+ Sbjct: 200 DEPLHALVTANT-MENVKKAVEQIRNILKQGIETPEDQNDL-RKMQLRELARLNGTLRED 257
>SAM68_CHICK (Q8UUW7) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (Src-associated in mitosis 68 kDa protein) (Sam68) Length = 433 Score = 44.3 bits (103), Expect = 3e-04 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 6/98 (6%) Frame = -1 Query: 602 RGSIKDPAREDMMR--GKPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMD 429 +GS++D A+E+ +R G P Y HLN LH+ +E P A + A E ++ L P Sbjct: 183 KGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP-- 240 Query: 428 ESQDFFKKQQLRELAMLNG----TLREEGMQRSGSASP 327 + D ++Q EL+ LNG T G R A+P Sbjct: 241 DMMDDICQEQFLELSYLNGVPEPTRGRGGPVRGRGAAP 278
>SAM68_RAT (Q91V33) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 43.9 bits (102), Expect = 4e-04 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = -1 Query: 602 RGSIKDPAREDMMR--GKPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMD 429 +GS++D A+E+ +R G P Y HLN LH+ +E P A + A E ++ L P Sbjct: 200 KGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP-- 257 Query: 428 ESQDFFKKQQLRELAMLNG 372 + D ++Q EL+ LNG Sbjct: 258 DMMDDICQEQFLELSYLNG 276
>SAM68_MOUSE (Q60749) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 43.9 bits (102), Expect = 4e-04 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = -1 Query: 602 RGSIKDPAREDMMR--GKPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMD 429 +GS++D A+E+ +R G P Y HLN LH+ +E P A + A E ++ L P Sbjct: 200 KGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP-- 257 Query: 428 ESQDFFKKQQLRELAMLNG 372 + D ++Q EL+ LNG Sbjct: 258 DMMDDICQEQFLELSYLNG 276
>SAM68_HUMAN (Q07666) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 43.9 bits (102), Expect = 4e-04 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = -1 Query: 602 RGSIKDPAREDMMR--GKPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMD 429 +GS++D A+E+ +R G P Y HLN LH+ +E P A + A E ++ L P Sbjct: 200 KGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP-- 257 Query: 428 ESQDFFKKQQLRELAMLNG 372 + D ++Q EL+ LNG Sbjct: 258 DMMDDICQEQFLELSYLNG 276
>MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synthesis lethal 5| protein) Length = 476 Score = 43.9 bits (102), Expect = 4e-04 Identities = 29/82 (35%), Positives = 45/82 (54%) Frame = -1 Query: 602 RGSIKDPAREDMMRGKPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDES 423 RGS+K+ + PG + +PLH L+ A+ +I + +++ + P E Sbjct: 192 RGSVKEGKNASDL--PPGAMNFEDPLHCLIIADSEDKIQKGIKVCQNIVIKAVTSP--EG 247 Query: 422 QDFFKKQQLRELAMLNGTLREE 357 Q+ K+ QLRELA LNGTLRE+ Sbjct: 248 QNDLKRGQLRELAELNGTLRED 269
>GRP33_ARTSA (P13230) Glycine-rich protein GRP33| Length = 308 Score = 32.0 bits (71), Expect = 1.4 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Frame = -1 Query: 602 RGSIKDPAREDMMR--GKPGYEHLNEPLHI-LVEAELPVEIIDARLMQAREILEDLLRPM 432 RGS++D +E+ +R G Y HLNE LHI ++ P E AR+ A ++ + P Sbjct: 118 RGSMRDRNKEEELRNSGDVKYAHLNEQLHIEIISIASPAE-AHARMAYALTEIKKYITPE 176 Query: 431 DE 426 ++ Sbjct: 177 ED 178
>EAF5_YEAST (P39995) Chromatin modification-related protein EAF5| (ESA1-associated factor 5) Length = 279 Score = 30.0 bits (66), Expect = 5.4 Identities = 13/49 (26%), Positives = 26/49 (53%) Frame = -1 Query: 455 LEDLLRPMDESQDFFKKQQLRELAMLNGTLREEGMQRSGSASPFHNSLG 309 + D+ + +DE D FKK Q+ ++ M+ + + G++ S H + G Sbjct: 107 MHDIEKLLDEKYDRFKKTQVEQIRMMEDEILKNGIKTGASQLQPHANAG 155
>MYH9_RAT (Q62812) Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle| myosin heavy chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin heavy chain, type A) (Nonmuscle myosin heavy chain-A) (NMMHC-A) Length = 1960 Score = 29.6 bits (65), Expect = 7.0 Identities = 21/72 (29%), Positives = 34/72 (47%) Frame = -1 Query: 557 KPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAML 378 K E L + L +A+L +E+ L + E L+ DE + KKQ +R++ + Sbjct: 1538 KTQLEELEDELQATEDAKLRLEV---NLQAMKAQFERDLQGRDEQSEEKKKQLVRQVREM 1594 Query: 377 NGTLREEGMQRS 342 L +E QRS Sbjct: 1595 EAELEDERKQRS 1606
>MYH9_MOUSE (Q8VDD5) Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle| myosin heavy chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin heavy chain, type A) (Nonmuscle myosin heavy chain-A) (NMMHC-A) Length = 1959 Score = 29.6 bits (65), Expect = 7.0 Identities = 21/72 (29%), Positives = 34/72 (47%) Frame = -1 Query: 557 KPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAML 378 K E L + L +A+L +E+ L + E L+ DE + KKQ +R++ + Sbjct: 1537 KTQLEELEDELQATEDAKLRLEV---NLQAMKAQFERDLQGRDEQSEEKKKQLVRQVREM 1593 Query: 377 NGTLREEGMQRS 342 L +E QRS Sbjct: 1594 EAELEDERKQRS 1605
>MYH9_HUMAN (P35579) Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle| myosin heavy chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin heavy chain, type A) (Nonmuscle myosin heavy chain-A) (NMMHC-A) Length = 1959 Score = 29.6 bits (65), Expect = 7.0 Identities = 21/72 (29%), Positives = 34/72 (47%) Frame = -1 Query: 557 KPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAML 378 K E L + L +A+L +E+ L + E L+ DE + KKQ +R++ + Sbjct: 1537 KTQLEELEDELQATEDAKLRLEV---NLQAMKAQFERDLQGRDEQSEEKKKQLVRQVREM 1593 Query: 377 NGTLREEGMQRS 342 L +E QRS Sbjct: 1594 EAELEDERKQRS 1605
>S6A20_HUMAN (Q9NP91) Sodium- and chloride-dependent transporter XTRP3 (Solute| carrier family 6 member 20) (Neurotransmitter transporter rB21A homolog) Length = 592 Score = 29.3 bits (64), Expect = 9.2 Identities = 18/48 (37%), Positives = 28/48 (58%) Frame = +1 Query: 199 LATKADP*AYSVSVSGQMIGSSMVLMAFYPLVLALFIPRLLWKGDAEP 342 L TK P AY+++V G ++ SS + + L F+ R L +GDA+P Sbjct: 546 LVTKDYP-AYALAVIGLLVASSTMCIPL--AALGTFVQRRLKRGDADP 590
>TXLNA_HUMAN (P40222) Alpha-taxilin| Length = 546 Score = 29.3 bits (64), Expect = 9.2 Identities = 14/55 (25%), Positives = 30/55 (54%) Frame = -1 Query: 545 EHLNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAM 381 EH+++ + +L +++DA+L QA+E+L++ +DF K+ + M Sbjct: 321 EHIDK---VFKHKDLQQQLVDAKLQQAQEMLKEAEERHQREKDFLLKEAVESQRM 372 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,478,064 Number of Sequences: 219361 Number of extensions: 1713626 Number of successful extensions: 4890 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4777 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4888 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
