Clone Information

BLAST Search Result

Clone Name	rbaal3k15
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY108992.1\| Zea mays PCO062765 mRNA sequence	210	5e-51
2	ref\|NM_185970.1\| Oryza sativa (japonica cultivar-group), mRNA	194	3e-46
3	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	188	2e-44
4	dbj\|AP005184.5\| Oryza sativa (japonica cultivar-group) genomic D...	188	2e-44
5	ref\|XM_479396.1\| Oryza sativa (japonica cultivar-group), mRNA	168	2e-38
6	dbj\|AK060061.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	168	2e-38
7	dbj\|AP005182.5\| Oryza sativa (japonica cultivar-group) genomic D...	159	1e-35
8	ref\|NM_121375.3\| Arabidopsis thaliana unknown protein AT5G13720 ...	70	1e-08
9	ref\|NM_121376.2\| Arabidopsis thaliana SIGD (SIGMA-LIKE FACTOR 4)...	70	1e-08
10	gb\|AY150387.1\| Arabidopsis thaliana unknown protein (At5g13720) ...	70	1e-08
11	gb\|AY096494.1\| Arabidopsis thaliana unknown protein (At5g13720) ...	70	1e-08
12	dbj\|AB021119.1\| Arabidopsis thaliana sigD gene for RNA polymeras...	70	1e-08
13	dbj\|AB006704.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	70	1e-08
14	gb\|AY110425.1\| Zea mays CL28396_2 mRNA sequence	70	1e-08
15	gb\|AC025905.3\| Oryza sativa (japonica cultivar-group) chromosome...	46	0.15
16	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.15
17	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	46	0.15
18	gb\|AC133874.10\| Mus musculus chromosome 19, clone RP23-81N16, co...	42	2.4
19	emb\|CT573502.2\| Medicago truncatula chromosome 5 clone mte1-69f2...	42	2.4
20	gb\|AC120416.11\| Mus musculus chromosome 1, clone RP24-472N18, co...	40	9.6
21	gb\|AE017350.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	9.6
22	ref\|XM_603414.2\| PREDICTED: Bos taurus similar to mitochondrial ...	40	9.6
23	ref\|XM_955005.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.6
24	ref\|XM_325692.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.6
25	gb\|AY814775.1\| Schistosoma japonicum SJCHGC09088 protein mRNA, c...	40	9.6
26	ref\|XM_567554.1\| Cryptococcus neoformans var. neoformans JEC21 h...	40	9.6
27	gb\|AC108527.6\| Rattus norvegicus 9 BAC CH230-7F11 (Children's Ho...	40	9.6
28	emb\|AL939125.1\|SCO939125 Streptomyces coelicolor A3(2) complete ...	40	9.6
29	emb\|AL939105.1\|SCO939105 Streptomyces coelicolor A3(2) complete ...	40	9.6
30	gb\|AC018600.6\| Homo sapiens, clone RP11-26L8, complete sequence	40	9.6
31	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	9.6
32	gb\|CP000254.1\| Methanospirillum hungatei JF-1, complete genome	40	9.6
33	gb\|AY747397.1\| Arachis hypogaea isolate PLTRP2B09 resistance pro...	40	9.6
34	gb\|AY747362.1\| Arachis hypogaea isolate PLTRP2B05 resistance pro...	40	9.6
35	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	9.6
36	emb\|BX296515.11\| Pig DNA sequence from clone PigE-121D21, comple...	40	9.6
37	gb\|BT024054.1\| Zea mays clone EL01N0439D05 mRNA sequence	40	9.6
38	emb\|AL359397.3\|CNS05TE2 Human chromosome 14 DNA sequence BAC R-2...	40	9.6
39	gb\|AC113456.9\| Mus musculus chromosome 1, clone RP23-257E16, com...	40	9.6
40	emb\|AL606902.26\| Mouse DNA sequence from clone RP23-167A12 on ch...	40	9.6
41	emb\|AL672247.8\| Mouse DNA sequence from clone RP23-95I19 on chro...	40	9.6
42	emb\|AL645530.11\| Mouse DNA sequence from clone RP23-92N10 on chr...	40	9.6
43	emb\|AL645484.14\| Mouse DNA sequence from clone RP23-38A10 on chr...	40	9.6

>gb|AY108992.1| Zea mays PCO062765 mRNA sequence
          Length = 499

 Score =  210 bits (106), Expect = 5e-51
 Identities = 190/218 (87%)
 Strand = Plus / Minus

                                                                       
Query: 270 tgcaggatgtagagggaggccgaggagaggaagatgcagaccgagtagctgagcaggtcc 329
           |||||||||||||| || || || || | ||||||||||| |||||||||||| ||||||
Sbjct: 307 tgcaggatgtagagagaagctgacgacaagaagatgcagatcgagtagctgaggaggtcc 248

                                                                       
Query: 330 agccccgtggtgatcttcaccatcttgctccgctcgaacatcttcaccagcaggatcatc 389
           ||||||||||  ||| ||||||||||||||  ||||||||||||||| || || ||||||
Sbjct: 247 agccccgtggctatcgtcaccatcttgctcttctcgaacatcttcacaagtagaatcatc 188

                                                                       
Query: 390 acgatgacgtgcccaaccttggtcttgagctcgtccagggacgtgatcttcatccacttc 449
           |||||||||||||| || || |||||||||||||| || || ||||| ||||||||||||
Sbjct: 187 acgatgacgtgccccacttttgtcttgagctcgtcaagcgaggtgatgttcatccacttc 128

                                                 
Query: 450 ggcctctccttcagagcgaacatcccgaacagcgacga 487
           || |  ||||||| ||||||||||||||||| ||||||
Sbjct: 127 gggcgttccttcaaagcgaacatcccgaacaacgacga 90



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 532 gcgttgctgatgaacagcccgtagagacccatccc 566
           |||||||||||||| || |||||||||||||||||
Sbjct: 46  gcgttgctgatgaagaggccgtagagacccatccc 12

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>ref|NM_185970.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 861

 Score =  194 bits (98), Expect = 3e-46
 Identities = 215/254 (84%)
 Strand = Plus / Minus

                                                                       
Query: 222 tacaagtggggcatcaccgactcctcgtgctcgggccggtggaggttatgcaggatgtag 281
           |||||||  ||||| ||||| || || || || |||| ||| ||||| ||||||||||| 
Sbjct: 860 tacaagtttggcataaccgagtcatcctgttcaggcctgtgaaggttgtgcaggatgtac 801

                                                                       
Query: 282 agggaggccgaggagaggaagatgcagaccgagtagctgagcaggtccagccccgtggtg 341
           || || || || || ||||||||||||||||||||||| |||||||||| |||||| || 
Sbjct: 800 agtgaagcggacgacaggaagatgcagaccgagtagctcagcaggtccaaccccgttgtt 741

                                                                       
Query: 342 atcttcaccatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgc 401
           ||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||| |||
Sbjct: 740 atcttcaccattttgctcctctcgaacatcttcaccagaaggatcatgacgatgacatgc 681

                                                                       
Query: 402 ccaaccttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttc 461
           || || ||||| || || ||||||||||| || |||||||||||||| || || ||||| 
Sbjct: 680 cctactttggttttcagttcgtccagggaggtaatcttcatccactttggtctttccttt 621

                         
Query: 462 agagcgaacatccc 475
           | ||| ||||||||
Sbjct: 620 aaagcaaacatccc 607



 Score =  137 bits (69), Expect = 5e-29
 Identities = 105/117 (89%)
 Strand = Plus / Minus

                                                                       
Query: 535 ttgctgatgaacagcccgtagagacccatcccgaagatcagcatgacggtgccagcaaga 594
           |||||||||||||||||||| |  |||||||| |||||||||||||| || ||||| |||
Sbjct: 548 ttgctgatgaacagcccgtacaagcccatcccaaagatcagcatgactgttccagcgaga 489

                                                                    
Query: 595 tacacatcaatggcctcgacgaccttgaggaccatctgccctgtatggacacctttg 651
           || ||||||||||| ||||| || |||||||||||||||||||||||||| ||||||
Sbjct: 488 taaacatcaatggcttcgacaactttgaggaccatctgccctgtatggacgcctttg 432

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  188 bits (95), Expect = 2e-44
 Identities = 194/227 (85%)
 Strand = Plus / Minus

                                                                            
Query: 222      tacaagtggggcatcaccgactcctcgtgctcgggccggtggaggttatgcaggatgtag 281
                |||||||  ||||| ||||| || || || || |||| ||| ||||| ||||||||||| 
Sbjct: 27579477 tacaagtttggcataaccgagtcatcctgttcaggcctgtgaaggttgtgcaggatgtac 27579418

                                                                            
Query: 282      agggaggccgaggagaggaagatgcagaccgagtagctgagcaggtccagccccgtggtg 341
                || || || || || ||||||||||||||||||||||| |||||||||| |||||| || 
Sbjct: 27579417 agtgaagcggacgacaggaagatgcagaccgagtagctcagcaggtccaaccccgttgtt 27579358

                                                                            
Query: 342      atcttcaccatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgc 401
                ||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||| |||
Sbjct: 27579357 atcttcaccattttgctcctctcgaacatcttcaccagaaggatcatgacgatgacatgc 27579298

                                                               
Query: 402      ccaaccttggtcttgagctcgtccagggacgtgatcttcatccactt 448
                || || ||||| || || ||||||||||| || ||||||||||||||
Sbjct: 27579297 cctactttggttttcagttcgtccagggaggtaatcttcatccactt 27579251



 Score =  159 bits (80), Expect = 1e-35
 Identities = 167/196 (85%)
 Strand = Plus / Minus

                                                                            
Query: 264      aggttatgcaggatgtagagggaggccgaggagaggaagatgcagaccgagtagctgagc 323
                ||||| ||||||||||| ||||| ||||| || | |||||||||||||| ||||||||||
Sbjct: 27576141 aggttgtgcaggatgtacagggaagccgacgacaagaagatgcagaccgcgtagctgagc 27576082

                                                                            
Query: 324      aggtccagccccgtggtgatcttcaccatcttgctccgctcgaacatcttcaccagcagg 383
                |||||||  ||||||||||| | |||||||||||||| |||||||||||||||||| || 
Sbjct: 27576081 aggtccattcccgtggtgatgtgcaccatcttgctcctctcgaacatcttcaccaggaga 27576022

                                                                            
Query: 384      atcatcacgatgacgtgcccaaccttggtcttgagctcgtccagggacgtgatcttcatc 443
                ||||||||||||| ||| || | ||| || |||||||| || || ||  ||||  |||||
Sbjct: 27576021 atcatcacgatgatgtggcccagcttcgttttgagctcatcgagagagctgattctcatc 27575962

                                
Query: 444      cacttcggcctctcct 459
                ||| |||| |||||||
Sbjct: 27575961 cacctcggtctctcct 27575946



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                            
Query: 533      cgttgctgatgaacagcccgtagagacccatcccgaagatcagcatgacggtgccagcaa 592
                ||||||||||||||||||| || ||||||||||| || ||||||||||| || |||||||
Sbjct: 27575711 cgttgctgatgaacagcccatacagacccatcccaaaaatcagcatgactgttccagcaa 27575652

                          
Query: 593      gatacacatc 602
                ||||||||||
Sbjct: 27575651 gatacacatc 27575642



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                            
Query: 535      ttgctgatgaacagcccgtagagacccatcccgaagatcagcatgacggtgccagcaaga 594
                |||||||||||||||||||| |  |||||||| |||||||||||||| || ||||| |||
Sbjct: 27578743 ttgctgatgaacagcccgtacaagcccatcccaaagatcagcatgactgttccagcgaga 27578684

                        
Query: 595      tacacatc 602
                || |||||
Sbjct: 27578683 taaacatc 27578676



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                  
Query: 602      caatggcctcgacgaccttgaggaccatctgccctgtatggacacctttg 651
                ||||||| ||||| || |||||||||||||||||||||||||| ||||||
Sbjct: 27577999 caatggcttcgacaactttgaggaccatctgccctgtatggacgcctttg 27577950



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                          
Query: 607      gcctcgacgaccttgaggaccatctgccctgtatggacacct 648
                |||||||||| | |||||||||||||||||||||||||||||
Sbjct: 27575455 gcctcgacgagcctgaggaccatctgccctgtatggacacct 27575414

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>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0047B07
          Length = 157797

 Score =  188 bits (95), Expect = 2e-44
 Identities = 194/227 (85%)
 Strand = Plus / Minus

                                                                         
Query: 222   tacaagtggggcatcaccgactcctcgtgctcgggccggtggaggttatgcaggatgtag 281
             |||||||  ||||| ||||| || || || || |||| ||| ||||| ||||||||||| 
Sbjct: 36470 tacaagtttggcataaccgagtcatcctgttcaggcctgtgaaggttgtgcaggatgtac 36411

                                                                         
Query: 282   agggaggccgaggagaggaagatgcagaccgagtagctgagcaggtccagccccgtggtg 341
             || || || || || ||||||||||||||||||||||| |||||||||| |||||| || 
Sbjct: 36410 agtgaagcggacgacaggaagatgcagaccgagtagctcagcaggtccaaccccgttgtt 36351

                                                                         
Query: 342   atcttcaccatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgc 401
             ||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||| |||
Sbjct: 36350 atcttcaccattttgctcctctcgaacatcttcaccagaaggatcatgacgatgacatgc 36291

                                                            
Query: 402   ccaaccttggtcttgagctcgtccagggacgtgatcttcatccactt 448
             || || ||||| || || ||||||||||| || ||||||||||||||
Sbjct: 36290 cctactttggttttcagttcgtccagggaggtaatcttcatccactt 36244



 Score =  159 bits (80), Expect = 1e-35
 Identities = 167/196 (85%)
 Strand = Plus / Minus

                                                                         
Query: 264   aggttatgcaggatgtagagggaggccgaggagaggaagatgcagaccgagtagctgagc 323
             ||||| ||||||||||| ||||| ||||| || | |||||||||||||| ||||||||||
Sbjct: 33134 aggttgtgcaggatgtacagggaagccgacgacaagaagatgcagaccgcgtagctgagc 33075

                                                                         
Query: 324   aggtccagccccgtggtgatcttcaccatcttgctccgctcgaacatcttcaccagcagg 383
             |||||||  ||||||||||| | |||||||||||||| |||||||||||||||||| || 
Sbjct: 33074 aggtccattcccgtggtgatgtgcaccatcttgctcctctcgaacatcttcaccaggaga 33015

                                                                         
Query: 384   atcatcacgatgacgtgcccaaccttggtcttgagctcgtccagggacgtgatcttcatc 443
             ||||||||||||| ||| || | ||| || |||||||| || || ||  ||||  |||||
Sbjct: 33014 atcatcacgatgatgtggcccagcttcgttttgagctcatcgagagagctgattctcatc 32955

                             
Query: 444   cacttcggcctctcct 459
             ||| |||| |||||||
Sbjct: 32954 cacctcggtctctcct 32939



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                         
Query: 533   cgttgctgatgaacagcccgtagagacccatcccgaagatcagcatgacggtgccagcaa 592
             ||||||||||||||||||| || ||||||||||| || ||||||||||| || |||||||
Sbjct: 32704 cgttgctgatgaacagcccatacagacccatcccaaaaatcagcatgactgttccagcaa 32645

                       
Query: 593   gatacacatc 602
             ||||||||||
Sbjct: 32644 gatacacatc 32635



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                         
Query: 535   ttgctgatgaacagcccgtagagacccatcccgaagatcagcatgacggtgccagcaaga 594
             |||||||||||||||||||| |  |||||||| |||||||||||||| || ||||| |||
Sbjct: 35736 ttgctgatgaacagcccgtacaagcccatcccaaagatcagcatgactgttccagcgaga 35677

                     
Query: 595   tacacatc 602
             || |||||
Sbjct: 35676 taaacatc 35669



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                               
Query: 602   caatggcctcgacgaccttgaggaccatctgccctgtatggacacctttg 651
             ||||||| ||||| || |||||||||||||||||||||||||| ||||||
Sbjct: 34992 caatggcttcgacaactttgaggaccatctgccctgtatggacgcctttg 34943



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                       
Query: 607   gcctcgacgaccttgaggaccatctgccctgtatggacacct 648
             |||||||||| | |||||||||||||||||||||||||||||
Sbjct: 32448 gcctcgacgagcctgaggaccatctgccctgtatggacacct 32407

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>ref|XM_479396.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1073

 Score =  168 bits (85), Expect = 2e-38
 Identities = 178/209 (85%)
 Strand = Plus / Minus

                                                                       
Query: 264 aggttatgcaggatgtagagggaggccgaggagaggaagatgcagaccgagtagctgagc 323
           ||||| ||||||||||| ||||| ||||| || | |||||||||||||| ||||||||||
Sbjct: 843 aggttgtgcaggatgtacagggaagccgacgacaagaagatgcagaccgcgtagctgagc 784

                                                                       
Query: 324 aggtccagccccgtggtgatcttcaccatcttgctccgctcgaacatcttcaccagcagg 383
           |||||||  ||||||||||| | |||||||||||||| |||||||||||||||||| || 
Sbjct: 783 aggtccattcccgtggtgatgtgcaccatcttgctcctctcgaacatcttcaccaggaga 724

                                                                       
Query: 384 atcatcacgatgacgtgcccaaccttggtcttgagctcgtccagggacgtgatcttcatc 443
           ||||||||||||| ||| || | ||| || |||||||| || || ||  ||||  |||||
Sbjct: 723 atcatcacgatgatgtggcccagcttcgttttgagctcatcgagagagctgattctcatc 664

                                        
Query: 444 cacttcggcctctccttcagagcgaacat 472
           ||| |||| |||||||||| ||| |||||
Sbjct: 663 cacctcggtctctccttcaaagcaaacat 635



 Score =  151 bits (76), Expect = 4e-33
 Identities = 106/116 (91%)
 Strand = Plus / Minus

                                                                       
Query: 533 cgttgctgatgaacagcccgtagagacccatcccgaagatcagcatgacggtgccagcaa 592
           ||||||||||||||||||| || ||||||||||| || ||||||||||| || |||||||
Sbjct: 578 cgttgctgatgaacagcccatacagacccatcccaaaaatcagcatgactgttccagcaa 519

                                                                   
Query: 593 gatacacatcaatggcctcgacgaccttgaggaccatctgccctgtatggacacct 648
           |||||||||| || |||||||||| | |||||||||||||||||||||||||||||
Sbjct: 518 gatacacatcgatagcctcgacgagcctgaggaccatctgccctgtatggacacct 463

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>dbj|AK060061.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-F12, full
           insert sequence
          Length = 1073

 Score =  168 bits (85), Expect = 2e-38
 Identities = 178/209 (85%)
 Strand = Plus / Minus

                                                                       
Query: 264 aggttatgcaggatgtagagggaggccgaggagaggaagatgcagaccgagtagctgagc 323
           ||||| ||||||||||| ||||| ||||| || | |||||||||||||| ||||||||||
Sbjct: 843 aggttgtgcaggatgtacagggaagccgacgacaagaagatgcagaccgcgtagctgagc 784

                                                                       
Query: 324 aggtccagccccgtggtgatcttcaccatcttgctccgctcgaacatcttcaccagcagg 383
           |||||||  ||||||||||| | |||||||||||||| |||||||||||||||||| || 
Sbjct: 783 aggtccattcccgtggtgatgtgcaccatcttgctcctctcgaacatcttcaccaggaga 724

                                                                       
Query: 384 atcatcacgatgacgtgcccaaccttggtcttgagctcgtccagggacgtgatcttcatc 443
           ||||||||||||| ||| || | ||| || |||||||| || || ||  ||||  |||||
Sbjct: 723 atcatcacgatgatgtggcccagcttcgttttgagctcatcgagagagctgattctcatc 664

                                        
Query: 444 cacttcggcctctccttcagagcgaacat 472
           ||| |||| |||||||||| ||| |||||
Sbjct: 663 cacctcggtctctccttcaaagcaaacat 635



 Score =  151 bits (76), Expect = 4e-33
 Identities = 106/116 (91%)
 Strand = Plus / Minus

                                                                       
Query: 533 cgttgctgatgaacagcccgtagagacccatcccgaagatcagcatgacggtgccagcaa 592
           ||||||||||||||||||| || ||||||||||| || ||||||||||| || |||||||
Sbjct: 578 cgttgctgatgaacagcccatacagacccatcccaaaaatcagcatgactgttccagcaa 519

                                                                   
Query: 593 gatacacatcaatggcctcgacgaccttgaggaccatctgccctgtatggacacct 648
           |||||||||| || |||||||||| | |||||||||||||||||||||||||||||
Sbjct: 518 gatacacatcgatagcctcgacgagcctgaggaccatctgccctgtatggacacct 463

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>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0018C07
          Length = 141707

 Score =  159 bits (80), Expect = 1e-35
 Identities = 167/196 (85%)
 Strand = Plus / Minus

                                                                          
Query: 264    aggttatgcaggatgtagagggaggccgaggagaggaagatgcagaccgagtagctgagc 323
              ||||| ||||||||||| ||||| ||||| || | |||||||||||||| ||||||||||
Sbjct: 140112 aggttgtgcaggatgtacagggaagccgacgacaagaagatgcagaccgcgtagctgagc 140053

                                                                          
Query: 324    aggtccagccccgtggtgatcttcaccatcttgctccgctcgaacatcttcaccagcagg 383
              |||||||  ||||||||||| | |||||||||||||| |||||||||||||||||| || 
Sbjct: 140052 aggtccattcccgtggtgatgtgcaccatcttgctcctctcgaacatcttcaccaggaga 139993

                                                                          
Query: 384    atcatcacgatgacgtgcccaaccttggtcttgagctcgtccagggacgtgatcttcatc 443
              ||||||||||||| ||| || | ||| || |||||||| || || ||  ||||  |||||
Sbjct: 139992 atcatcacgatgatgtggcccagcttcgttttgagctcatcgagagagctgattctcatc 139933

                              
Query: 444    cacttcggcctctcct 459
              ||| |||| |||||||
Sbjct: 139932 cacctcggtctctcct 139917



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                          
Query: 533    cgttgctgatgaacagcccgtagagacccatcccgaagatcagcatgacggtgccagcaa 592
              ||||||||||||||||||| || ||||||||||| || ||||||||||| || |||||||
Sbjct: 139682 cgttgctgatgaacagcccatacagacccatcccaaaaatcagcatgactgttccagcaa 139623

                        
Query: 593    gatacacatc 602
              ||||||||||
Sbjct: 139622 gatacacatc 139613



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                        
Query: 607    gcctcgacgaccttgaggaccatctgccctgtatggacacct 648
              |||||||||| | |||||||||||||||||||||||||||||
Sbjct: 139426 gcctcgacgagcctgaggaccatctgccctgtatggacacct 139385

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>ref|NM_121375.3| Arabidopsis thaliana unknown protein AT5G13720 mRNA, complete cds
          Length = 1012

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                       
Query: 348 accatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgcccaacc 407
           ||||||||||| | ||||||||||||||| ||||| ||||| || ||||| || || || 
Sbjct: 805 accatcttgcttctctcgaacatcttcactagcagaatcataacaatgacatgtcccact 746

                                                                  
Query: 408 ttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttca 462
           ||||| || ||||| || || ||  ||||||||||||| || || ||||||||||
Sbjct: 745 ttggttttaagctcatcaagtgagctgatcttcatccattttggtctctccttca 691

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>ref|NM_121376.2| Arabidopsis thaliana SIGD (SIGMA-LIKE FACTOR 4); DNA binding /
            DNA-directed RNA polymerase/ transcription factor
            AT5G13730 (SIGD) mRNA, complete cds
          Length = 1785

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Plus

                                                                        
Query: 348  accatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgcccaacc 407
            ||||||||||| | ||||||||||||||| ||||| ||||| || ||||| || || || 
Sbjct: 1556 accatcttgcttctctcgaacatcttcactagcagaatcataacaatgacatgtcccact 1615

                                                                   
Query: 408  ttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttca 462
            ||||| || ||||| || || ||  ||||||||||||| || || ||||||||||
Sbjct: 1616 ttggttttaagctcatcaagtgagctgatcttcatccattttggtctctccttca 1670

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>gb|AY150387.1| Arabidopsis thaliana unknown protein (At5g13720) mRNA, complete cds
          Length = 820

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                       
Query: 348 accatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgcccaacc 407
           ||||||||||| | ||||||||||||||| ||||| ||||| || ||||| || || || 
Sbjct: 686 accatcttgcttctctcgaacatcttcactagcagaatcataacaatgacatgtcccact 627

                                                                  
Query: 408 ttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttca 462
           ||||| || ||||| || || ||  ||||||||||||| || || ||||||||||
Sbjct: 626 ttggttttaagctcatcaagtgagctgatcttcatccattttggtctctccttca 572

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>gb|AY096494.1| Arabidopsis thaliana unknown protein (At5g13720) mRNA, complete cds
          Length = 974

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                       
Query: 348 accatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgcccaacc 407
           ||||||||||| | ||||||||||||||| ||||| ||||| || ||||| || || || 
Sbjct: 805 accatcttgcttctctcgaacatcttcactagcagaatcataacaatgacatgtcccact 746

                                                                  
Query: 408 ttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttca 462
           ||||| || ||||| || || ||  ||||||||||||| || || ||||||||||
Sbjct: 745 ttggttttaagctcatcaagtgagctgatcttcatccattttggtctctccttca 691

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>dbj|AB021119.1| Arabidopsis thaliana sigD gene for RNA polymerase sigma subunit SigD
            and spliced variant SigD*, complete cds
          Length = 2975

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Plus

                                                                        
Query: 348  accatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgcccaacc 407
            ||||||||||| | ||||||||||||||| ||||| ||||| || ||||| || || || 
Sbjct: 2337 accatcttgcttctctcgaacatcttcactagcagaatcataacaatgacatgtcccact 2396

                                                                   
Query: 408  ttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttca 462
            ||||| || ||||| || || ||  ||||||||||||| || || ||||||||||
Sbjct: 2397 ttggttttaagctcatcaagtgagctgatcttcatccattttggtctctccttca 2451

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>dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSH12
          Length = 79259

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                         
Query: 348   accatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgcccaacc 407
             ||||||||||| | ||||||||||||||| ||||| ||||| || ||||| || || || 
Sbjct: 72132 accatcttgcttctctcgaacatcttcactagcagaatcataacaatgacatgtcccact 72073

                                                                    
Query: 408   ttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttca 462
             ||||| || ||||| || || ||  ||||||||||||| || || ||||||||||
Sbjct: 72072 ttggttttaagctcatcaagtgagctgatcttcatccattttggtctctccttca 72018

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>gb|AY110425.1| Zea mays CL28396_2 mRNA sequence
          Length = 1071

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                       
Query: 532 gcgttgctgatgaacagcccgtagagacccatcccgaagatcagcatgacggtgccagca 591
           |||||||||| ||| || ||||||||||||||||| || |||| |||||| ||  |||||
Sbjct: 249 gcgttgctgacgaagagaccgtagagacccatcccaaatatcaacatgaccgtttcagca 190

                      
Query: 592 agatacacatc 602
           |||||||||||
Sbjct: 189 agatacacatc 179

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>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16,
             complete sequence
          Length = 179157

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 42/47 (89%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                            
Query: 535   ttgctgatgaacagcccgtagagacccatcccgaagatcagcatgac 581
             ||||||||||||| |||||| | ||||||||| || |||||||||||
Sbjct: 15640 ttgctgatgaacaacccgtacatacccatccc-aaaatcagcatgac 15595

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 42/47 (89%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                               
Query: 535      ttgctgatgaacagcccgtagagacccatcccgaagatcagcatgac 581
                ||||||||||||| |||||| | ||||||||| || |||||||||||
Sbjct: 16136751 ttgctgatgaacaacccgtacatacccatccc-aaaatcagcatgac 16136706

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 42/47 (89%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                               
Query: 535      ttgctgatgaacagcccgtagagacccatcccgaagatcagcatgac 581
                ||||||||||||| |||||| | ||||||||| || |||||||||||
Sbjct: 16144992 ttgctgatgaacaacccgtacatacccatccc-aaaatcagcatgac 16144947

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>gb|AC133874.10| Mus musculus chromosome 19, clone RP23-81N16, complete sequence
          Length = 215113

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 281    gagggaggccgaggagaggaagatg 305
              |||||||| ||||||||||||||||
Sbjct: 178263 gagggaggtcgaggagaggaagatg 178239

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>emb|CT573502.2| Medicago truncatula chromosome 5 clone mte1-69f21, COMPLETE SEQUENCE
          Length = 89977

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1    tttgtgctatatgaatgtttt 21
            |||||||||||||||||||||
Sbjct: 7686 tttgtgctatatgaatgtttt 7706

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>gb|AC120416.11| Mus musculus chromosome 1, clone RP24-472N18, complete sequence
          Length = 199727

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 282   agggaggccgaggagaggaagatg 305
             ||||||||||||| ||||||||||
Sbjct: 22277 agggaggccgaggggaggaagatg 22300

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>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete
              sequence
          Length = 1085720

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 439    tcatccacttcggcctctcc 458
              ||||||||||||||||||||
Sbjct: 764020 tcatccacttcggcctctcc 764039

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>ref|XM_603414.2| PREDICTED: Bos taurus similar to mitochondrial protein 18 kDa
           isoform a (LOC525071), mRNA
          Length = 1123

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 caggatgtagagggaggccg 291
           ||||||||||||||||||||
Sbjct: 420 caggatgtagagggaggccg 401

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>ref|XM_955005.1| Neurospora crassa OR74A hypothetical protein (NCU05838.1) partial
            mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 284  ggaggccgaggagaggaaga 303
            ||||||||||||||||||||
Sbjct: 993  ggaggccgaggagaggaaga 1012

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>ref|XM_325692.1| Neurospora crassa OR74A hypothetical protein (NCU05838.1) partial
            mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 284  ggaggccgaggagaggaaga 303
            ||||||||||||||||||||
Sbjct: 993  ggaggccgaggagaggaaga 1012

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>gb|AY814775.1| Schistosoma japonicum SJCHGC09088 protein mRNA, complete cds
          Length = 745

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 8   tatatgaatgttttgaataa 27
           ||||||||||||||||||||
Sbjct: 585 tatatgaatgttttgaataa 604

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>ref|XM_567554.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNJ02640) partial mRNA
          Length = 809

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 439 tcatccacttcggcctctcc 458
           ||||||||||||||||||||
Sbjct: 698 tcatccacttcggcctctcc 679

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>gb|AC108527.6| Rattus norvegicus 9 BAC CH230-7F11 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 225777

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 620    tgaggaccatctgccctgta 639
              ||||||||||||||||||||
Sbjct: 129877 tgaggaccatctgccctgta 129896

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>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 419    ctcgtccagggacgtgatct 438
              ||||||||||||||||||||
Sbjct: 142451 ctcgtccagggacgtgatct 142470

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>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   ctcctcgtgctcgggccggt 261
             ||||||||||||||||||||
Sbjct: 66240 ctcctcgtgctcgggccggt 66259

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>gb|AC018600.6| Homo sapiens, clone RP11-26L8, complete sequence
          Length = 159469

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    atgaatgttttgaataaagt 30
             ||||||||||||||||||||
Sbjct: 17300 atgaatgttttgaataaagt 17281

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 90      aaccggtcgaccaccgcgca 109
               ||||||||||||||||||||
Sbjct: 2393304 aaccggtcgaccaccgcgca 2393323

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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 432     gtgatcttcatccacttcgg 451
               ||||||||||||||||||||
Sbjct: 3355402 gtgatcttcatccacttcgg 3355421

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>gb|AY747397.1| Arachis hypogaea isolate PLTRP2B09 resistance protein PLTR gene,
           partial cds
          Length = 529

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 8   tatatgaatgttttgaataaagtt 31
           |||| |||||||||||||||||||
Sbjct: 460 tataagaatgttttgaataaagtt 483

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>gb|AY747362.1| Arachis hypogaea isolate PLTRP2B05 resistance protein PLTR gene,
           partial cds
          Length = 529

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 8   tatatgaatgttttgaataaagtt 31
           |||| |||||||||||||||||||
Sbjct: 460 tataagaatgttttgaataaagtt 483

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 419     ctcgtccagggacgtgatct 438
               ||||||||||||||||||||
Sbjct: 2919304 ctcgtccagggacgtgatct 2919285

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>emb|BX296515.11| Pig DNA sequence from clone PigE-121D21, complete sequence
          Length = 179691

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 602    caatggcctcgacgaccttgagga 625
              ||||||||| ||||||||||||||
Sbjct: 123809 caatggccttgacgaccttgagga 123832

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>gb|BT024054.1| Zea mays clone EL01N0439D05 mRNA sequence
          Length = 1966

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 284  ggaggccgaggagaggaaga 303
            ||||||||||||||||||||
Sbjct: 1307 ggaggccgaggagaggaaga 1326

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>emb|AL359397.3|CNS05TE2 Human chromosome 14 DNA sequence BAC R-247L20 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 168193

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    atgttttgaataaagttcttcctt 38
             |||||||||||||||| |||||||
Sbjct: 35838 atgttttgaataaagtccttcctt 35815

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>gb|AC113456.9| Mus musculus chromosome 1, clone RP23-257E16, complete sequence
          Length = 174902

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 282    agggaggccgaggagaggaagatg 305
              ||||||||||||| ||||||||||
Sbjct: 101457 agggaggccgaggggaggaagatg 101434

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>emb|AL606902.26| Mouse DNA sequence from clone RP23-167A12 on chromosome 4, complete
            sequence
          Length = 100421

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  atgcaggatgtagagggagg 288
            ||||||||||||||||||||
Sbjct: 7833 atgcaggatgtagagggagg 7814

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>emb|AL672247.8| Mouse DNA sequence from clone RP23-95I19 on chromosome X, complete
              sequence
          Length = 224241

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 678    aggcctctttttatgtacac 697
              ||||||||||||||||||||
Sbjct: 108451 aggcctctttttatgtacac 108432

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>emb|AL645530.11| Mouse DNA sequence from clone RP23-92N10 on chromosome 11, complete
             sequence
          Length = 91481

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 440   catccacttcggcctctcct 459
             ||||||||||||||||||||
Sbjct: 91016 catccacttcggcctctcct 91035

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>emb|AL645484.14| Mouse DNA sequence from clone RP23-38A10 on chromosome 11, complete
            sequence
          Length = 161787

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 440  catccacttcggcctctcct 459
            ||||||||||||||||||||
Sbjct: 1535 catccacttcggcctctcct 1554


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,225,414
Number of Sequences: 3902068
Number of extensions: 5225414
Number of successful extensions: 101587
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101218
Number of HSP's gapped (non-prelim): 369
length of query: 698
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 675
effective length of database: 17,143,297,704
effective search space: 11571725950200
effective search space used: 11571725950200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result