ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal3k14 |
|---|---|
| Clone Library Name | barley_pub |
>HOW_DROME (O01367) Protein held out wings (KH-domain protein KH93F) (Putative| RNA-binding protein) (Protein muscle-specific) (Protein wings held out) (Protein struthio) (Quaking-related 93F) Length = 405 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/60 (40%), Positives = 36/60 (60%) Frame = -3 Query: 625 LNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLNGTLRE 446 L++ LH+L+ E +L QA ++ LL P E +D KK+QL ELA++NGT R+ Sbjct: 202 LSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGTYRD 261
>GLD1_CAEEL (Q17339) Female germline-specific tumor suppressor gld-1 (Defective| in germ line development protein 1) Length = 463 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/59 (40%), Positives = 35/59 (59%) Frame = -3 Query: 625 LNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLNGTLR 449 L + LH+LV+ E + +L A E ++ LL P E D K++QL ELA++NGT R Sbjct: 270 LEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAIINGTYR 328
>SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) Length = 639 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/60 (45%), Positives = 37/60 (61%) Frame = -3 Query: 622 NEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLNGTLREE 443 +EPLH LV A +E + + Q R IL+ + ++ D +K QLRELA LNGTLRE+ Sbjct: 200 DEPLHALVTANT-MENVKKAVEQIRNILKQGIETPEDQNDL-RKMQLRELARLNGTLRED 257
>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) (CW17) Length = 653 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/60 (45%), Positives = 37/60 (61%) Frame = -3 Query: 622 NEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLNGTLREE 443 +EPLH LV A +E + + Q R IL+ + ++ D +K QLRELA LNGTLRE+ Sbjct: 200 DEPLHALVTANT-MENVKKAVEQIRNILKQGIETPEDQNDL-RKMQLRELARLNGTLRED 257
>MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synthesis lethal 5| protein) Length = 476 Score = 37.7 bits (86), Expect = 0.028 Identities = 23/59 (38%), Positives = 35/59 (59%) Frame = -3 Query: 619 EPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLNGTLREE 443 +PLH L+ A+ +I + +++ + P E Q+ K+ QLRELA LNGTLRE+ Sbjct: 213 DPLHCLIIADSEDKIQKGIKVCQNIVIKAVTSP--EGQNDLKRGQLRELAELNGTLRED 269
>KHDR3_RAT (Q9JLP1) KH domain-containing, RNA binding, signal| transduction-associated protein 3 (Sam68-like mammalian protein 2) (SLM-2) (rSLM-2) Length = 346 Score = 35.0 bits (79), Expect = 0.18 Identities = 21/56 (37%), Positives = 31/56 (55%) Frame = -3 Query: 625 LNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLNG 458 LN+ LH+L+E P AR+ A E ++ L P + D ++ QL+EL LNG Sbjct: 123 LNDDLHVLIEVFAPPAEAYARMGHALEDIKKFLIP--DYNDEIRQAQLQELTYLNG 176
>KHDR3_MOUSE (Q9R226) KH domain-containing, RNA binding, signal| transduction-associated protein 3 (Sam68-like mammalian protein 2) (SLM-2) (RNA-binding protein Etoile) Length = 346 Score = 35.0 bits (79), Expect = 0.18 Identities = 21/56 (37%), Positives = 31/56 (55%) Frame = -3 Query: 625 LNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLNG 458 LN+ LH+L+E P AR+ A E ++ L P + D ++ QL+EL LNG Sbjct: 123 LNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNG 176
>KHDR3_HUMAN (O75525) KH domain-containing, RNA binding, signal| transduction-associated protein 3 (Sam68-like mammalian protein 2) (SLM-2) (Sam68-like phosphotyrosine protein) (RNA-binding protein T-Star) Length = 346 Score = 35.0 bits (79), Expect = 0.18 Identities = 21/56 (37%), Positives = 31/56 (55%) Frame = -3 Query: 625 LNEPLHILVEAELPVEIIDARLMQAREILEDLLRPMDESQDFFKKQQLRELAMLNG 458 LN+ LH+L+E P AR+ A E ++ L P + D ++ QL+EL LNG Sbjct: 123 LNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNG 176
>KRA61_RABIT (Q02957) Keratin, glycine/tyrosine-rich of hair| Length = 79 Score = 31.6 bits (70), Expect = 2.0 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Frame = -1 Query: 192 FGYGKTGCRLSSYLS-GCARSGLCIAMSYDWGFDLRFLC 79 +GYG GC L SY G R G Y +G+ R LC Sbjct: 23 YGYGGLGCGLGSYYGCGYRRLGCGYGCGYGYGYGSRSLC 61
>EAF5_YEAST (P39995) Chromatin modification-related protein EAF5| (ESA1-associated factor 5) Length = 279 Score = 30.0 bits (66), Expect = 5.8 Identities = 13/49 (26%), Positives = 26/49 (53%) Frame = -3 Query: 541 LEDLLRPMDESQDFFKKQQLRELAMLNGTLREEGMQRSGSASPFHNSLG 395 + D+ + +DE D FKK Q+ ++ M+ + + G++ S H + G Sbjct: 107 MHDIEKLLDEKYDRFKKTQVEQIRMMEDEILKNGIKTGASQLQPHANAG 155
>S6A20_HUMAN (Q9NP91) Sodium- and chloride-dependent transporter XTRP3 (Solute| carrier family 6 member 20) (Neurotransmitter transporter rB21A homolog) Length = 592 Score = 29.3 bits (64), Expect = 10.0 Identities = 18/48 (37%), Positives = 28/48 (58%) Frame = +3 Query: 285 LATKADP*AYSVSVSGQMIGSSMVLMAFYPLVLALFIPRLLWKGDAEP 428 L TK P AY+++V G ++ SS + + L F+ R L +GDA+P Sbjct: 546 LVTKDYP-AYALAVIGLLVASSTMCIPL--AALGTFVQRRLKRGDADP 590 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,608,037 Number of Sequences: 219361 Number of extensions: 1675630 Number of successful extensions: 4577 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4464 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4575 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
