ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal3k08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 1104 bits (557), Expect = 0.0 Identities = 629/641 (98%), Gaps = 9/641 (1%) Strand = Plus / Minus Query: 30 aatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaatcgcttg 88 ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1702 aatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaatcgcttg 1643 Query: 89 gatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgcttaaaag 147 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1642 gatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1583 Query: 148 gtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttggcattttg 206 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1582 gtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttggcattttg 1523 Query: 207 gtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacctcctccta 265 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1522 gtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacctcctccta 1463 Query: 266 tgcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaaggaaccagtct 324 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1462 tgcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaaggaaccagtct 1403 Query: 325 tcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagct 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1402 tcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagct 1343 Query: 385 gcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttct 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1342 gcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttct 1283 Query: 445 cgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagcctct 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1282 cgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagcctct 1223 Query: 505 tgccaatgttctcgattccggtagagccgacccacttgcgcacctcattcgtcgtacacc 564 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1222 tgccaatgttctcgattccggtagagccgacccacttgcgcacctca-tcgtcgtacacc 1164 Query: 565 cgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaaggtgtcgacgatctt 624 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1163 cgagcacgcagagcaccgaaaaagtcaatggattgtcctggg-aaggtgtcgacgatctt 1105 Query: 625 gacgacaggactcgtcactgacattggtcggtctggaagat 665 |||||| |||||||||| |||||| ||||||||||||||| Sbjct: 1104 tacgaca-gactcgtcacagacatt-gtcggtctggaagat 1066
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 886 bits (447), Expect = 0.0 Identities = 623/672 (92%), Gaps = 16/672 (2%) Strand = Plus / Minus Query: 1 aatgataagtaggtgtattggtctttgccaa-tgggtatactcaatatatttagagatat 59 |||||||||||| |||| |||||| |||| | |||||||||||||| |||| ||| Sbjct: 798 aatgataagtagtcctatttgtctttaccaaataggtatactcaatatcttta----tat 743 Query: 60 attaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta-----ggta 113 ||||||||||||||||||||||||||||||||||||||||| ||||||||| | || Sbjct: 742 attaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaaggata 683 Query: 114 aaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgct 173 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 682 aaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcact 624 Query: 174 ccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaa 233 ||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || ||||| Sbjct: 623 cctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacaggcaa 564 Query: 234 agtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatgg 293 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 563 agtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgtatgg 504 Query: 294 agaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccaga 353 ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 503 agaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacccaga 444 Query: 354 gctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctgg 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 443 gctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctgg 384 Query: 414 acgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtc 473 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 383 acgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaaggtc 324 Query: 474 acgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccg 533 || || ||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct: 323 actggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtagaggtc 264 Query: 534 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 593 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 263 acccacttgcgcacctc-gtcgtcgtacacccgagcacgcagagcaccgaaaaagtcgat 205 Query: 594 ggattgtcctgggaaaggtgtcgacgatcttgacgacaggactcgtcactgacattggtc 653 ||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||| ||| Sbjct: 204 ggattgtcctggg-aaggtgtcgacgatcttgacgac-ggactcgtcgctgacatt-gtc 148 Query: 654 ggtctggaagat 665 |||||||||||| Sbjct: 147 ggtctggaagat 136
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 880 bits (444), Expect = 0.0 Identities = 579/616 (93%), Gaps = 11/616 (1%) Strand = Plus / Minus Query: 56 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 109 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537 Query: 110 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 169 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478 Query: 170 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 229 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418 Query: 230 gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 289 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358 Query: 290 atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 349 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298 Query: 350 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 1238 Query: 410 ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 469 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 1237 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 1178 Query: 470 ggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtaga 529 |||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct: 1177 ggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtaga 1118 Query: 530 gccgacccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagt 589 | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1117 ggtcacccacttgcgcacctc-gtcgtcgtacacccgagcacgcagagcaccgaaaaagt 1059 Query: 590 caatggattgtcctgggaaaggtgtcgacgatcttgacgacaggactcgtcactgacatt 649 | ||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||| Sbjct: 1058 cgatggattgtcctggg-aaggtgtcgacgatcttgacgac-ggactcgtcgctgacatt 1001 Query: 650 ggtcggtctggaagat 665 ||||||||||||||| Sbjct: 1000 -gtcggtctggaagat 986
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 660 bits (333), Expect = 0.0 Identities = 542/603 (89%), Gaps = 13/603 (2%) Strand = Plus / Minus Query: 70 catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 123 ||||||||||| ||||||| ||||||||||| |||||||| || |||||||||| Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534 Query: 124 -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 182 || | |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474 Query: 183 tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 242 ||||||| |||||||||||| ||||||| |||||||||||||| |||||||| ||||| Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414 Query: 243 ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 302 |||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||| Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttc 1356 Query: 303 taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctgg 362 |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296 Query: 363 ctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatg 422 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatg 1236 Query: 423 tgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccg 482 || |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||| Sbjct: 1235 tggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccg 1176 Query: 483 tcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttg 542 |||||||||||||||||||||||||| |||||||| |||||||| || ||||||||| Sbjct: 1175 tcccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttg 1116 Query: 543 cgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcc 602 ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 1115 cgcacctca-acgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcc 1057 Query: 603 tgggaaaggtgtcgacgatcttgacgacaggactcgtcactgacattggtcggtctggaa 662 |||| || ||||||||||||||||||||| |||||||| ||||| || |||||||||||| Sbjct: 1056 tggg-aangtgtcgacgatcttgacgaca-gactcgtcgctgacgtt-gtcggtctggaa 1000 Query: 663 gat 665 ||| Sbjct: 999 gat 997
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 650 bits (328), Expect = 0.0 Identities = 335/336 (99%), Gaps = 1/336 (0%) Strand = Plus / Minus Query: 255 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296 Query: 315 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236 Query: 375 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176 Query: 435 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116 Query: 495 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcattc 554 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 7115 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctca-tc 7057 Query: 555 gtcgtacacccgagcacgcagagcaccgaaaaagtc 590 |||||||||||||||||||||||||||||||||||| Sbjct: 7056 gtcgtacacccgagcacgcagagcaccgaaaaagtc 7021 Score = 492 bits (248), Expect = e-136 Identities = 258/260 (99%), Gaps = 1/260 (0%) Strand = Plus / Minus Query: 1 aatgataagtaggtgtattggtctttgccaa-tgggtatactcaatatatttagagatat 59 ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct: 7782 aatgataagtaggtgtattggtctttgccaaatgggtatacacaatatatttagagatat 7723 Query: 60 attaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaaacat 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7722 attaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaaacat 7663 Query: 120 cagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgc 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7662 cagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgc 7603 Query: 180 cgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtacc 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7602 cgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtacc 7543 Query: 240 ttgctgtgctcctttacctc 259 |||||||||||||||||||| Sbjct: 7542 ttgctgtgctcctttacctc 7523 Score = 103 bits (52), Expect = 7e-19 Identities = 73/76 (96%), Gaps = 3/76 (3%) Strand = Plus / Minus Query: 590 caatggattgtcctgggaaaggtgtcgacgatcttgacgacaggactcgtcactgacatt 649 ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct: 6880 caatggattgtcctgggaa-ggtgtcgacgatcttgacgaca-gactcgtcactgacatt 6823 Query: 650 ggtcggtctggaagat 665 ||||||||||||||| Sbjct: 6822 -gtcggtctggaagat 6808 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 381 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 440 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 441 ttctcgactgtcatctttggctgctcgaa 469 ||||| | |||||||| ||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873 Score = 61.9 bits (31), Expect = 2e-06 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand = Plus / Minus Query: 530 gccgacccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagt 589 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||| Sbjct: 3812 gccgacccacttgcgcacctc-gtcgtcgtacacccgtgcccgcagcgcgccgaagaagt 3754 Query: 590 caatgga 596 | ||||| Sbjct: 3753 cgatgga 3747
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 636 bits (321), Expect = e-179 Identities = 355/361 (98%), Gaps = 4/361 (1%) Strand = Plus / Minus Query: 305 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108 Query: 365 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048 Query: 425 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988 Query: 485 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928 Query: 545 cacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctg 604 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 cacctca-tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctg 869 Query: 605 ggaaaggtgtcgacgatcttgacgacaggactcgtcactgacattggtcggtctggaaga 664 || ||||||||||||||||| |||||| |||||||||| |||||| |||||||||||||| Sbjct: 868 gg-aaggtgtcgacgatctttacgaca-gactcgtcacagacatt-gtcggtctggaaga 812 Query: 665 t 665 | Sbjct: 811 t 811 Score = 444 bits (224), Expect = e-121 Identities = 227/228 (99%) Strand = Plus / Minus Query: 30 aatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 89 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1392 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 1333 Query: 90 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1332 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 1273 Query: 150 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1272 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 1213 Query: 210 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 257 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1212 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 507 bits (256), Expect = e-140 Identities = 296/308 (96%), Gaps = 1/308 (0%) Strand = Plus / Minus Query: 283 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 342 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249 Query: 343 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189 Query: 403 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129 Query: 463 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 522 |||| |||||||| || ||||||||||||||||| ||| ||||||||||||||||||| | Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69 Query: 523 cggtagagccgacccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccg 582 |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 68 cggtagaggtcacccacttgcgcacctc-gtcgtcgtacacccgagcacgcagagcaccg 10 Query: 583 aaaaagtc 590 |||||||| Sbjct: 9 aaaaagtc 2
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 438 bits (221), Expect = e-119 Identities = 330/361 (91%), Gaps = 4/361 (1%) Strand = Plus / Minus Query: 305 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 364 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304 Query: 365 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 424 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244 Query: 425 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 484 |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184 Query: 485 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 544 |||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1124 Query: 545 cacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctg 604 |||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||| Sbjct: 1123 cacctc-gtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctg 1065 Query: 605 ggaaaggtgtcgacgatcttgacgacaggactcgtcactgacattggtcggtctggaaga 664 || |||||||||||||||||||||||| |||||||| ||||| || |||||||||||||| Sbjct: 1064 gg-aaggtgtcgacgatcttgacgaca-gactcgtcgctgacgtt-gtcggtctggaaga 1008 Query: 665 t 665 | Sbjct: 1007 t 1007 Score = 176 bits (89), Expect = 6e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 129 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 188 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 189 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 248 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 249 tcctttacc 257 ||||||||| Sbjct: 1369 tcctttacc 1361
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 138 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 197 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 198 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 254 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395 Query: 255 acctcctcct 264 ||||||||| Sbjct: 1394 ccctcctcct 1385 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 304 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 363 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251 Query: 364 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 423 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191 Query: 424 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 483 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131 Query: 484 cccgcgagttcaccagcctcttgccaatgttctc 517 ||| |||||||||||||||||||||||||||||| Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097 Score = 71.9 bits (36), Expect = 3e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 534 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 593 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 1080 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 1022 Query: 594 ggattgtcctgggaaaggtgtcgacgatcttgacga 629 |||||| |||||||| | |||||||||||||||||| Sbjct: 1021 ggattggcctgggaa-gctgtcgacgatcttgacga 987
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 138 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 197 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 198 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 254 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433 Query: 255 acctcctcct 264 ||||||||| Sbjct: 1432 ccctcctcct 1423 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 304 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 363 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289 Query: 364 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 423 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229 Query: 424 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 483 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169 Query: 484 cccgcgagttcaccagcctcttgccaatgttctc 517 ||| |||||||||||||||||||||||||||||| Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135 Score = 71.9 bits (36), Expect = 3e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 534 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 593 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 1118 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 1060 Query: 594 ggattgtcctgggaaaggtgtcgacgatcttgacga 629 |||||| |||||||| | |||||||||||||||||| Sbjct: 1059 ggattggcctgggaa-gctgtcgacgatcttgacga 1025
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 138 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 197 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 198 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 254 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432 Query: 255 acctcctcct 264 ||||||||| Sbjct: 1431 ccctcctcct 1422 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 304 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 363 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288 Query: 364 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 423 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228 Query: 424 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 483 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168 Query: 484 cccgcgagttcaccagcctcttgccaatgttctc 517 ||| |||||||||||||||||||||||||||||| Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134 Score = 71.9 bits (36), Expect = 3e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 534 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 593 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 1117 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 1059 Query: 594 ggattgtcctgggaaaggtgtcgacgatcttgacga 629 |||||| |||||||| | |||||||||||||||||| Sbjct: 1058 ggattggcctgggaa-gctgtcgacgatcttgacga 1024
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 138 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 197 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 198 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 254 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216 Query: 255 acctcctcct 264 ||||||||| Sbjct: 1215 ccctcctcct 1206 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 304 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 363 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072 Query: 364 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 423 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012 Query: 424 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 483 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952 Query: 484 cccgcgagttcaccagcctcttgccaatgttctc 517 ||| |||||||||||||||||||||||||||||| Sbjct: 951 ccctcgagttcaccagcctcttgccaatgttctc 918 Score = 71.9 bits (36), Expect = 3e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 534 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 593 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 901 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 843 Query: 594 ggattgtcctgggaaaggtgtcgacgatcttgacga 629 |||||| |||||||| | |||||||||||||||||| Sbjct: 842 ggattggcctgggaa-gctgtcgacgatcttgacga 808
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 138 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 197 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 198 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 254 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437 Query: 255 acctcctcct 264 ||||||||| Sbjct: 1436 ccctcctcct 1427 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 304 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 363 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293 Query: 364 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 423 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233 Query: 424 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 483 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173 Query: 484 cccgcgagttcaccagcctcttgccaatgttctc 517 ||| |||||||||||||||||||||||||||||| Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139 Score = 71.9 bits (36), Expect = 3e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 534 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 593 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 1122 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 1064 Query: 594 ggattgtcctgggaaaggtgtcgacgatcttgacga 629 |||||| |||||||| | |||||||||||||||||| Sbjct: 1063 ggattggcctgggaa-gctgtcgacgatcttgacga 1029
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 138 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 197 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 198 ggcattttggtcggtgcaaccttccggcacgggca 232 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 301 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 360 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365 Query: 361 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 420 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425 Query: 421 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 480 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485 Query: 481 cgtcccgcgagttcaccagcctcttgccaatgttctc 517 | |||| |||||||||||||||||||||||||||||| Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 156 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 215 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 216 accttccggcacggg 230 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127 Score = 44.1 bits (22), Expect = 0.58 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Plus Query: 592 atggattgtcctgggaaaggtgtcgacgatcttgacga 629 |||||||| |||||||| | |||||||||||||||||| Sbjct: 108688 atggattggcctgggaa-gctgtcgacgatcttgacga 108724 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 489 gagttcaccagcctcttgccaatgttctc 517 ||||||||||||||| |||| |||||||| Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 138 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 197 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 198 ggcattttggtcggtgcaaccttccggcacgggca 232 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 301 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 360 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242 Query: 361 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 420 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302 Query: 421 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 480 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362 Query: 481 cgtcccgcgagttcaccagcctcttgccaatgttctc 517 | |||| |||||||||||||||||||||||||||||| Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 156 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 215 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 216 accttccggcacggg 230 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004 Score = 44.1 bits (22), Expect = 0.58 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Plus Query: 592 atggattgtcctgggaaaggtgtcgacgatcttgacga 629 |||||||| |||||||| | |||||||||||||||||| Sbjct: 30565 atggattggcctgggaa-gctgtcgacgatcttgacga 30601 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 489 gagttcaccagcctcttgccaatgttctc 517 ||||||||||||||| |||| |||||||| Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 138 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 197 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 198 ggcattttggtcggtgcaaccttccggcacgggca 232 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 304 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 363 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257 Query: 364 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 423 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197 Query: 424 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 483 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137 Query: 484 cccgcgagttcaccagcctcttgccaatgttctc 517 ||| |||||||||||||||||||||||||||||| Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103 Score = 71.9 bits (36), Expect = 3e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 534 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 593 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 1086 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 1028 Query: 594 ggattgtcctgggaaaggtgtcgacgatcttgacga 629 |||||| |||||||| | |||||||||||||||||| Sbjct: 1027 ggattggcctgggaa-gctgtcgacgatcttgacga 993
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 138 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 197 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 198 ggcattttggtcggtgcaaccttccggcacgggca 232 |||| |||||||||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 306 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 365 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 366 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 425 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 426 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 485 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130 Query: 486 cgcgagttcaccagcctcttgccaatgttctc 517 | |||||||||||||||||||||||||||||| Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098 Score = 71.9 bits (36), Expect = 3e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 534 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 593 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 1081 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 1023 Query: 594 ggattgtcctgggaaaggtgtcgacgatcttgacga 629 |||||| |||||||| | |||||||||||||||||| Sbjct: 1022 ggattggcctgggaa-gctgtcgacgatcttgacga 988
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 138 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 197 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 198 ggcattttggtcggtgcaaccttccggcacgggca 232 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 301 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 360 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504 Query: 361 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 420 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564 Query: 421 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 480 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624 Query: 481 cgtcccgcgagttcaccagcctcttgccaatgttctc 517 | |||| |||||||||||||||||||||||||||||| Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 156 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 215 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 216 accttccggcacggg 230 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266 Score = 44.1 bits (22), Expect = 0.58 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Plus Query: 592 atggattgtcctgggaaaggtgtcgacgatcttgacga 629 |||||||| |||||||| | |||||||||||||||||| Sbjct: 28303827 atggattggcctgggaa-gctgtcgacgatcttgacga 28303863 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 489 gagttcaccagcctcttgccaatgttctc 517 ||||||||||||||| |||| |||||||| Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 138 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 197 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 198 ggcattttggtcggtgcaaccttccggcacgggca 232 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 301 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 360 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953 Query: 361 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 420 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013 Query: 421 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 480 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073 Query: 481 cgtcccgcgagttcaccagcctcttgccaatgttctc 517 | |||| |||||||||||||||||||||||||||||| Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 156 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 215 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 216 accttccggcacggg 230 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715 Score = 44.1 bits (22), Expect = 0.58 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Plus Query: 592 atggattgtcctgggaaaggtgtcgacgatcttgacga 629 |||||||| |||||||| | |||||||||||||||||| Sbjct: 28286276 atggattggcctgggaa-gctgtcgacgatcttgacga 28286312 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 489 gagttcaccagcctcttgccaatgttctc 517 ||||||||||||||| |||| |||||||| Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 138 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 197 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 198 ggcattttggtcggtgcaaccttccggcacgggca 232 |||| |||||||||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 306 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 365 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 366 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 425 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 426 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 485 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165 Query: 486 cgcgagttcaccagcctcttgccaatgttctc 517 | |||||||||||||||||||||||||||||| Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133 Score = 71.9 bits (36), Expect = 3e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 534 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 593 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 1116 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 1058 Query: 594 ggattgtcctgggaaaggtgtcgacgatcttgacga 629 |||||| |||||||| | |||||||||||||||||| Sbjct: 1057 ggattggcctgggaa-gctgtcgacgatcttgacga 1023
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 125 bits (63), Expect = 2e-25 Identities = 171/207 (82%) Strand = Plus / Minus Query: 302 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 361 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948 Query: 362 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 421 ||||| ||| |||| || |||||||| | ||| || || ||||||||||| || ||||| Sbjct: 947 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888 Query: 422 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 481 || |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 887 gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828 Query: 482 gtcccgcgagttcaccagcctcttgcc 508 ||| |||||||||||||||||||||| Sbjct: 827 ctccagcgagttcaccagcctcttgcc 801 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 148 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 207 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 208 tcggtgcaaccttc 221 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076 Score = 54.0 bits (27), Expect = 6e-04 Identities = 49/55 (89%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 577 gcaccgaaaaagtcaatggattgtcctgggaaaggtgtcgacgatcttgacgaca 631 |||||||| |||||||||||||| || ||| ||||||||||||| ||||| |||| Sbjct: 733 gcaccgaagaagtcaatggattggcc-ggggaaggtgtcgacgagcttgatgaca 680
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 304 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 363 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506 Query: 364 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 423 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446 Query: 424 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 483 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386 Query: 484 cccgcgagttcaccagcctcttgccaatgttctc 517 ||| |||||||||||||||||||||||||||||| Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352 Score = 71.9 bits (36), Expect = 3e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 534 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 593 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 335 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 277 Query: 594 ggattgtcctgggaaaggtgtcgacgatcttgacga 629 |||||| |||||||| | |||||||||||||||||| Sbjct: 276 ggattggcctgggaa-gctgtcgacgatcttgacga 242
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 304 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 363 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300 Query: 364 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 423 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240 Query: 424 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 483 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180 Query: 484 cccgcgagttcaccagcctcttgccaatgttctc 517 ||| |||||||||||||||||||||||||||||| Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146 Score = 119 bits (60), Expect = 1e-23 Identities = 114/130 (87%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 138 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 197 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 198 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 254 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444 Query: 255 acctcctcct 264 ||||||||| Sbjct: 1443 ccctcctcct 1434 Score = 71.9 bits (36), Expect = 3e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 534 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 593 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 1129 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 1071 Query: 594 ggattgtcctgggaaaggtgtcgacgatcttgacga 629 |||||| |||||||| | |||||||||||||||||| Sbjct: 1070 ggattggcctgggaa-gctgtcgacgatcttgacga 1036
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 144 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 203 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 204 ttggtcggtgcaaccttccggcacgggca 232 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 119 bits (60), Expect = 1e-23 Identities = 165/200 (82%) Strand = Plus / Minus Query: 309 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 368 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 369 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 428 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 429 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 488 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015 Query: 489 gagttcaccagcctcttgcc 508 |||||||||||||||||||| Sbjct: 1014 gagttcaccagcctcttgcc 995 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 148 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 207 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 208 tcggtgcaaccttc 221 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232 Score = 54.0 bits (27), Expect = 6e-04 Identities = 49/55 (89%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 577 gcaccgaaaaagtcaatggattgtcctgggaaaggtgtcgacgatcttgacgaca 631 |||||||| |||||||||||||| || ||| ||||||||||||| ||||| |||| Sbjct: 927 gcaccgaagaagtcaatggattggcc-ggggaaggtgtcgacgagcttgatgaca 874
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 103 bits (52), Expect = 7e-19 Identities = 166/204 (81%) Strand = Plus / Minus Query: 302 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 361 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249 Query: 362 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 421 ||||| ||| |||| || |||||||| | ||| || || ||||| ||||| || ||||| Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189 Query: 422 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 481 | |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129 Query: 482 gtcccgcgagttcaccagcctctt 505 ||| ||||||||||||||||||| Sbjct: 1128 ctccagcgagttcaccagcctctt 1105 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 148 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 207 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 208 tcggtgcaaccttc 221 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377 Score = 54.0 bits (27), Expect = 6e-04 Identities = 49/55 (89%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 577 gcaccgaaaaagtcaatggattgtcctgggaaaggtgtcgacgatcttgacgaca 631 |||||||| |||||||||||||| || ||| ||||||||||||| ||||| |||| Sbjct: 1034 gcaccgaagaagtcaatggattggcc-ggggaaggtgtcgacgagcttgatgaca 981
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 103 bits (52), Expect = 7e-19 Identities = 176/216 (81%), Gaps = 1/216 (0%) Strand = Plus / Minus Query: 381 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 440 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 441 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 500 ||||||| |||||||| ||||| ||||| ||| ||||| |||| ||||| || ||| Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123 Query: 501 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcattcgtcgta 560 | |||| |||||||||| ||| | ||||||||||||||||||||| |||||||| Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctc-gtcgtcgta 1064 Query: 561 cacccgagcacgcagagcaccgaaaaagtcaatgga 596 |||||| || ||||| || ||||| ||||| ||||| Sbjct: 1063 cacccgcgcccgcagcgcgccgaagaagtcgatgga 1028
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 138 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 197 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 198 ggcattttggtcggtgcaaccttccggcacgggca 232 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 97.6 bits (49), Expect = 4e-17 Identities = 160/197 (81%) Strand = Plus / Minus Query: 309 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 368 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105 Query: 369 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 428 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045 Query: 429 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 488 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985 Query: 489 gagttcaccagcctctt 505 ||||||||||||||||| Sbjct: 984 gagttcaccagcctctt 968 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 148 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 207 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 208 tcggtgcaaccttc 221 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202 Score = 54.0 bits (27), Expect = 6e-04 Identities = 49/55 (89%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 577 gcaccgaaaaagtcaatggattgtcctgggaaaggtgtcgacgatcttgacgaca 631 |||||||| |||||||||||||| || ||| ||||||||||||| ||||| |||| Sbjct: 897 gcaccgaagaagtcaatggattggcc-ggggaaggtgtcgacgagcttgatgaca 844
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 310 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 369 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 370 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 429 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 430 actctagcagcttctcgactgtcatctttggctgctcgaa 469 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 310 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 369 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 370 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 429 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 430 actctagcagcttctcgactgtcatctttggctgctcgaa 469 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 310 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 369 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 370 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 429 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 430 actctagcagcttctcgactgtcatctttggctgctcgaa 469 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 381 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 440 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 441 ttctcgactgtcatctttggctgctcgaa 469 ||||| | |||||||| ||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304 Score = 61.9 bits (31), Expect = 2e-06 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand = Plus / Minus Query: 530 gccgacccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagt 589 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||| Sbjct: 1243 gccgacccacttgcgcacctc-gtcgtcgtacacccgtgcccgcagcgcgccgaagaagt 1185 Query: 590 caatgga 596 | ||||| Sbjct: 1184 cgatgga 1178
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 1e-11 Identities = 97/116 (83%) Strand = Plus / Minus Query: 327 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 386 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 387 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 442 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 138 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 197 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 198 ggcattttggtcggtgcaaccttccggcacgggca 232 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 138 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 197 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 198 ggcattttggtcggtgcaaccttccggcacgggca 232 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 573 cagagcaccgaaaaagtcaatggattgtcctgggaa 608 ||||||||||||||||||||||||||| || ||||| Sbjct: 1113 cagagcaccgaaaaagtcaatggattggcccgggaa 1078
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 56.0 bits (28), Expect = 2e-04 Identities = 106/132 (80%) Strand = Plus / Minus Query: 338 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 397 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 398 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 457 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 458 tggctgctcgaa 469 ||||||||||| Sbjct: 1243 cggctgctcgaa 1232
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 48.1 bits (24), Expect = 0.037 Identities = 39/44 (88%) Strand = Plus / Minus Query: 553 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 596 ||||||||||| || |||||||| || ||||| ||||||||||| Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatgga 2680
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 48.1 bits (24), Expect = 0.037 Identities = 39/44 (88%) Strand = Plus / Minus Query: 553 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 596 ||||||||||| || |||||||| || ||||| ||||||||||| Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatgga 990
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 46.1 bits (23), Expect = 0.15 Identities = 48/55 (87%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 573 cagagcaccgaaaaagtcaatggattgtcctgggaaaggtgtcgacgatcttgac 627 |||||||||||| || ||||| |||||||| ||| ||| | |||||||||||||| Sbjct: 1126 cagagcaccgaagaaatcaatagattgtccaggg-aagctatcgacgatcttgac 1073
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 44.1 bits (22), Expect = 0.58 Identities = 43/50 (86%) Strand = Plus / Minus Query: 330 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 379 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 343 catcacccagagctgcctggct 364 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence Length = 153155 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 43 aatatatttagagatatattaa 64 |||||||||||||||||||||| Sbjct: 67942 aatatatttagagatatattaa 67963
>gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, complete sequence Length = 178257 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 aatgataagtaggtgtattgg 21 ||||||||||||||||||||| Sbjct: 109370 aatgataagtaggtgtattgg 109390
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence Length = 177245 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 tatatttagagatatattaac 65 ||||||||||||||||||||| Sbjct: 12315 tatatttagagatatattaac 12335
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence Length = 98660 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 tatatttagagatatattaac 65 ||||||||||||||||||||| Sbjct: 66387 tatatttagagatatattaac 66367
>gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, complete sequence Length = 217738 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aatgataagtaggtgtattgg 21 ||||||||||||||||||||| Sbjct: 149522 aatgataagtaggtgtattgg 149502
>gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, complete sequence Length = 168084 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aatgataagtaggtgtattgg 21 ||||||||||||||||||||| Sbjct: 131097 aatgataagtaggtgtattgg 131077
>dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530024M06 product:Hypothetical protein FLJ33092 (UST1r) homolog [Homo sapiens], full insert sequence Length = 2605 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aatgataagtaggtgtattgg 21 ||||||||||||||||||||| Sbjct: 2351 aatgataagtaggtgtattgg 2331
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 aaacatcagatattaaaagtg 134 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>gb|AC011308.8| Homo sapiens BAC clone RP11-522N18 from 2, complete sequence Length = 124740 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 591 aatggattgtcctgggaaagg 611 ||||||||||||||||||||| Sbjct: 54523 aatggattgtcctgggaaagg 54543
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 265 atgcagcaagagatggtgggt 285 ||||||||||||||||||||| Sbjct: 63530 atgcagcaagagatggtgggt 63550
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 381 agctgcacacgcttgacattgtcctgctc 409 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 aaacatcagatattaaaagtg 134 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 aaacatcagatattaaaagtg 134 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence Length = 105452 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 tatatttagagatatattaac 65 ||||||||||||||||||||| Sbjct: 6217 tatatttagagatatattaac 6197
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 cctttacctcctcctatgca 269 |||||||||||||||||||| Sbjct: 46359 cctttacctcctcctatgca 46378
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 catcacccagagctgcctggctca 366 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 cctttacctcctcctatgca 269 |||||||||||||||||||| Sbjct: 1637 cctttacctcctcctatgca 1656
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 40.1 bits (20), Expect = 9.1 Identities = 68/84 (80%) Strand = Plus / Minus Query: 339 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 398 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 399 ttgtcctgctcctggacgagcatg 422 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 cctttacctcctcctatgca 269 |||||||||||||||||||| Sbjct: 32945 cctttacctcctcctatgca 32964
>ref|XM_765396.1| Giardia lamblia ATCC 50803 heat shock protein (hsp70) partial mRNA Length = 3732 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 ggtctttgccaatgggtata 39 |||||||||||||||||||| Sbjct: 2247 ggtctttgccaatgggtata 2266
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 gtcagcaagctgcacacgct 393 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 tcagatattaaaagtggcat 138 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 tcagatattaaaagtggcat 138 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 tcagatattaaaagtggcat 138 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 catcacccagagctgcctggctca 366 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166149 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 aatatatttagagatatatt 62 |||||||||||||||||||| Sbjct: 30454 aatatatttagagatatatt 30473
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 ttgacattgtcctgctcctg 412 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase (pJQ11) Length = 883 Score = 40.1 bits (20), Expect = 9.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 577 gcaccgaaaaagtcaatggattgtcctgggaa 608 |||||||||||||| || |||||||| ||||| Sbjct: 345 gcaccgaaaaagtcgatagattgtccagggaa 314
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 catcacccagagctgcctggctca 366 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 147 ggtgtaaaggcagctgccgtcgtcgctc 174 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 aaacatgcccagcaatcgcttgga 90 |||||||||||||||||| ||||| Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 cctttacctcctcctatgca 269 |||||||||||||||||||| Sbjct: 34662 cctttacctcctcctatgca 34681
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 catcacccagagctgcctggctca 366 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 catcacccagagctgcctggctca 366 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 catcacccagagctgcctggctca 366 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tggcatgcttaaaaggtgta 152 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ttgacattgtcctgctcctg 412 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 catcacccagagctgcctggctca 366 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 239 cttgctgtgctcctttacctcctc 262 ||||||| |||||||||||||||| Sbjct: 648 cttgctgggctcctttacctcctc 625
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cctttacctcctcctatgca 269 |||||||||||||||||||| Sbjct: 27755 cctttacctcctcctatgca 27736
>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18, complete sequence Length = 174701 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 aatatatttagagatatatt 62 |||||||||||||||||||| Sbjct: 62504 aatatatttagagatatatt 62485
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 atcagatattaaaagtggcatgct 141 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,658,292 Number of Sequences: 3902068 Number of extensions: 4658292 Number of successful extensions: 88469 Number of sequences better than 10.0: 85 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 88058 Number of HSP's gapped (non-prelim): 317 length of query: 665 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 642 effective length of database: 17,143,297,704 effective search space: 11005997125968 effective search space used: 11005997125968 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
