| Clone Name | rbaak21j24 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104955.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A03, full insert sequence Length = 1334 Score = 599 bits (302), Expect = e-168 Identities = 495/558 (88%), Gaps = 1/558 (0%) Strand = Plus / Minus Query: 149 aacgacttctcggtctcctccaggcagtggtccttctcttcccgagaccagctagaagcg 208 ||||||||||| || || |||||||| ||||||||||| ||||| | ||||||||| ||| Sbjct: 1122 aacgacttctccgtttcatccaggcaatggtccttctcctcccgggtccagctagaggcg 1063 Query: 209 acttggtttagtgtggtgcggacattctgcagcagctgagacagggtaccttcccacttg 268 |||| ||| || || |||||||||||||||||||||| ||||| | || ||||| ||| Sbjct: 1062 acttcgttaagcttgttgcggacattctgcagcagctgggacagattgccctcccatttg 1003 Query: 269 tagaactccagctctttcttgttcagaatcttctcagcaacctttttgccaatcattcgg 328 |||||||||||||| |||||||||||||| ||||||| ||||| || |||||||||||| Sbjct: 1002 tagaactccagctccttcttgttcagaatattctcagagaccttcttcccaatcattcgg 943 Query: 329 cctccagcagtatgagcaaagtacacattatagaagtggcagataaatgcttgggggtcc 388 |||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||| |||| Sbjct: 942 cctccagccgtatgagcaaaatacacattatagaaatggcagataaaagcttgggagtcc 883 Query: 389 ttctcagacaactcttccagataggaagcatatgcagtaccagcagcagttggttctgga 448 || |||| || ||||||||||||||||||||||| ||| || | ||||| |||||||||| Sbjct: 882 ttttcagccagctcttccagataggaagcatatgtagtgccgggagcagatggttctgga 823 Query: 449 atggtgtgaccctgttccgtgaaccattccagatctttcttcagtggctctgatctctct 508 || ||||||||||||||| |||||||||||||||| ||||||||| | ||||||||||| Sbjct: 822 attgtgtgaccctgttccttgaaccattccagatccttcttcagttgttctgatctctcc 763 Query: 509 aacccagtattcctaaaatccgcataccaggggacggcggcgcggtcgacgatgtcctcg 568 |||||||||||||| || || ||||||||||||||||||||||||||||||||| |||| Sbjct: 762 aacccagtattcctgaactcagcataccaggggacggcggcgcggtcgacgatggtctcg 703 Query: 569 agggtctggaagacgagcttgctgtcgacgaggaagcgcaggtagccctcgacggtgggc 628 || |||| |||||||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 702 agcgtctcgaagacgagcttgctgtcgacgaggaagcggaggtagccgtccacggagggc 643 Query: 629 tcccacctggcgacggggggcgcctggggctccttctccccctccctggcctggtccttt 688 ||||||||||| || || |||||||| |||||||||||||| ||| ||||||||||| || Sbjct: 642 tcccacctggccaccggcggcgcctgcggctccttctccccttccttggcctggtcc-tt 584 Query: 689 ggtgtgcaggcgcatggc 706 ||||||||| |||||||| Sbjct: 583 ggtgtgcagccgcatggc 566
>dbj|AK068856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170O03, full insert sequence Length = 1331 Score = 599 bits (302), Expect = e-168 Identities = 495/558 (88%), Gaps = 1/558 (0%) Strand = Plus / Minus Query: 149 aacgacttctcggtctcctccaggcagtggtccttctcttcccgagaccagctagaagcg 208 ||||||||||| || || |||||||| ||||||||||| ||||| | ||||||||| ||| Sbjct: 1130 aacgacttctccgtttcatccaggcaatggtccttctcctcccgggtccagctagaggcg 1071 Query: 209 acttggtttagtgtggtgcggacattctgcagcagctgagacagggtaccttcccacttg 268 |||| ||| || || |||||||||||||||||||||| ||||| | || ||||| ||| Sbjct: 1070 acttcgttaagcttgttgcggacattctgcagcagctgggacagattgccctcccatttg 1011 Query: 269 tagaactccagctctttcttgttcagaatcttctcagcaacctttttgccaatcattcgg 328 |||||||||||||| |||||||||||||| ||||||| ||||| || |||||||||||| Sbjct: 1010 tagaactccagctccttcttgttcagaatattctcagagaccttcttcccaatcattcgg 951 Query: 329 cctccagcagtatgagcaaagtacacattatagaagtggcagataaatgcttgggggtcc 388 |||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||| |||| Sbjct: 950 cctccagccgtatgagcaaaatacacattatagaaatggcagataaaagcttgggagtcc 891 Query: 389 ttctcagacaactcttccagataggaagcatatgcagtaccagcagcagttggttctgga 448 || |||| || ||||||||||||||||||||||| ||| || | ||||| |||||||||| Sbjct: 890 ttttcagccagctcttccagataggaagcatatgtagtgccgggagcagatggttctgga 831 Query: 449 atggtgtgaccctgttccgtgaaccattccagatctttcttcagtggctctgatctctct 508 || ||||||||||||||| |||||||||||||||| ||||||||| | ||||||||||| Sbjct: 830 attgtgtgaccctgttccttgaaccattccagatccttcttcagttgttctgatctctcc 771 Query: 509 aacccagtattcctaaaatccgcataccaggggacggcggcgcggtcgacgatgtcctcg 568 |||||||||||||| || || ||||||||||||||||||||||||||||||||| |||| Sbjct: 770 aacccagtattcctgaactcagcataccaggggacggcggcgcggtcgacgatggtctcg 711 Query: 569 agggtctggaagacgagcttgctgtcgacgaggaagcgcaggtagccctcgacggtgggc 628 || |||| |||||||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 710 agcgtctcgaagacgagcttgctgtcgacgaggaagcggaggtagccgtccacggagggc 651 Query: 629 tcccacctggcgacggggggcgcctggggctccttctccccctccctggcctggtccttt 688 ||||||||||| || || |||||||| |||||||||||||| ||| ||||||||||| || Sbjct: 650 tcccacctggccaccggcggcgcctgcggctccttctccccttccttggcctggtcc-tt 592 Query: 689 ggtgtgcaggcgcatggc 706 ||||||||| |||||||| Sbjct: 591 ggtgtgcagccgcatggc 574
>gb|AF320026.1|AF320026 Sorghum bicolor heme oxygenase 1 (HO1) mRNA, partial cds; nuclear gene for chloroplast product Length = 710 Score = 591 bits (298), Expect = e-165 Identities = 486/546 (89%), Gaps = 2/546 (0%) Strand = Plus / Minus Query: 109 tcaggtgaatatctggcgtaggaggtcccctgagtaggcaaacgacttctcggtctcctc 168 |||||||||||| ||||| |||||| | ||||||||||| ||||||||||| |||||||| Sbjct: 557 tcaggtgaatatatggcggaggaggcctcctgagtaggcgaacgacttctccgtctcctc 498 Query: 169 caggcagtggtccttctcttcccgagaccagctagaagcgacttggtttagtgtggtgcg 228 |||||||||||||||||| |||||||||||||| |||||||||| ||| || || |||| Sbjct: 497 caggcagtggtccttctcctcccgagaccagcttgaagcgacttcgttaagcttgttgcg 438 Query: 229 gacattctgcagcagctgagacagggtaccttcccacttgtagaactccagctctttctt 288 ||| |||||||||||||| || || | || ||||||||||||||||||||||||||||| Sbjct: 437 gacgttctgcagcagctgggagagattgccctcccacttgtagaactccagctctttctt 378 Query: 289 gttcagaatcttctcagcaacctttttgccaatcattcggcctccagcagtatgagcaaa 348 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 377 gttcagaatcttctcagaaacctttttgccaatcattcggcctccagcagtatgagcaaa 318 Query: 349 gtacacattatagaagtggcagataaatgcttgggggtccttctcagacaactcttccag 408 |||||| |||||||| |||||||||||||| ||||| ||||||||||||| ||||||||| Sbjct: 317 gtacacgttatagaaatggcagataaatgcctggggatccttctcagacagctcttccag 258 Query: 409 atag-gaagcatatgcagtaccagcagcagttggttctggaatggtgtgaccctgttccg 467 ||| |||||||||| ||| |||| | | |||||||||||| ||||| ||||||| | Sbjct: 257 -tagagaagcatatgtagtgccagggggcgatggttctggaattgtgtggccctgttgcc 199 Query: 468 tgaaccattccagatctttcttcagtggctctgatctctctaacccagtattcctaaaat 527 |||||||||||||||| || || |||| |||||||||||| | |||||| |||| || | Sbjct: 198 tgaaccattccagatcctttttgagtgcctctgatctctccagcccagtgttccggaact 139 Query: 528 ccgcataccaggggacggcggcgcggtcgacgatgtcctcgagggtctggaagacgagct 587 | |||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||| Sbjct: 138 ctgcataccacgggacggcggcgcgttcgacgatgtcttcgagcgtctggaagacgagct 79 Query: 588 tgctgtcgacgaggaagcgcaggtagccctcgacggtgggctcccacctggcgacggggg 647 |||||||||| ||||| || |||||||||||||| | |||||||||| |||||||||||| Sbjct: 78 tgctgtcgacaaggaatcggaggtagccctcgacagagggctcccacttggcgacggggg 19 Query: 648 gcgcct 653 |||||| Sbjct: 18 gcgcct 13
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 260 bits (131), Expect = 6e-66 Identities = 194/215 (90%) Strand = Plus / Plus Query: 308 acctttttgccaatcattcggcctccagcagtatgagcaaagtacacattatagaagtgg 367 ||||| || |||||||||||||||||||| ||||||||||| |||||||||||||| ||| Sbjct: 23471143 accttcttcccaatcattcggcctccagccgtatgagcaaaatacacattatagaaatgg 23471202 Query: 368 cagataaatgcttgggggtccttctcagacaactcttccagataggaagcatatgcagta 427 |||||||| ||||||| |||||| |||| || ||||||||||||||||||||||| ||| Sbjct: 23471203 cagataaaagcttgggagtccttttcagccagctcttccagataggaagcatatgtagtg 23471262 Query: 428 ccagcagcagttggttctggaatggtgtgaccctgttccgtgaaccattccagatctttc 487 || | ||||| |||||||||||| ||||||||||||||| |||||||||||||||| ||| Sbjct: 23471263 ccgggagcagatggttctggaattgtgtgaccctgttccttgaaccattccagatccttc 23471322 Query: 488 ttcagtggctctgatctctctaacccagtattcct 522 |||||| | ||||||||||| |||||||||||||| Sbjct: 23471323 ttcagttgttctgatctctccaacccagtattcct 23471357 Score = 208 bits (105), Expect = 2e-50 Identities = 157/173 (90%), Gaps = 1/173 (0%) Strand = Plus / Plus Query: 534 accaggggacggcggcgcggtcgacgatgtcctcgagggtctggaagacgagcttgctgt 593 ||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||| Sbjct: 23473628 accaggggacggcggcgcggtcgacgatggtctcgagcgtctcgaagacgagcttgctgt 23473687 Query: 594 cgacgaggaagcgcaggtagccctcgacggtgggctcccacctggcgacggggggcgcct 653 ||||||||||||| |||||||| || |||| ||||||||||||||| || || ||||||| Sbjct: 23473688 cgacgaggaagcggaggtagccgtccacggagggctcccacctggccaccggcggcgcct 23473747 Query: 654 ggggctccttctccccctccctggcctggtcctttggtgtgcaggcgcatggc 706 | |||||||||||||| ||| ||||||||||| ||||||||||| |||||||| Sbjct: 23473748 gcggctccttctccccttccttggcctggtcc-ttggtgtgcagccgcatggc 23473799 Score = 97.6 bits (49), Expect = 5e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 225 tgcggacattctgcagcagctgagacagggtaccttcccacttgtagaactccagctctt 284 |||||||||||||||||||||| ||||| | || ||||| ||||||||||||||||| | Sbjct: 23470522 tgcggacattctgcagcagctgggacagattgccctcccatttgtagaactccagctcct 23470581 Query: 285 tcttgttcagaatcttctcag 305 ||||||||||||| ||||||| Sbjct: 23470582 tcttgttcagaatattctcag 23470602 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 149 aacgacttctcggtctcctccaggcagtggtccttctcttcccgagaccagct 201 ||||||||||| || || |||||||| ||||||||||| ||||| | |||||| Sbjct: 23470332 aacgacttctccgtttcatccaggcaatggtccttctcctcccgggtccagct 23470384
>dbj|AP003615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0486H12 Length = 179085 Score = 260 bits (131), Expect = 6e-66 Identities = 194/215 (90%) Strand = Plus / Plus Query: 308 acctttttgccaatcattcggcctccagcagtatgagcaaagtacacattatagaagtgg 367 ||||| || |||||||||||||||||||| ||||||||||| |||||||||||||| ||| Sbjct: 130698 accttcttcccaatcattcggcctccagccgtatgagcaaaatacacattatagaaatgg 130757 Query: 368 cagataaatgcttgggggtccttctcagacaactcttccagataggaagcatatgcagta 427 |||||||| ||||||| |||||| |||| || ||||||||||||||||||||||| ||| Sbjct: 130758 cagataaaagcttgggagtccttttcagccagctcttccagataggaagcatatgtagtg 130817 Query: 428 ccagcagcagttggttctggaatggtgtgaccctgttccgtgaaccattccagatctttc 487 || | ||||| |||||||||||| ||||||||||||||| |||||||||||||||| ||| Sbjct: 130818 ccgggagcagatggttctggaattgtgtgaccctgttccttgaaccattccagatccttc 130877 Query: 488 ttcagtggctctgatctctctaacccagtattcct 522 |||||| | ||||||||||| |||||||||||||| Sbjct: 130878 ttcagttgttctgatctctccaacccagtattcct 130912 Score = 208 bits (105), Expect = 2e-50 Identities = 157/173 (90%), Gaps = 1/173 (0%) Strand = Plus / Plus Query: 534 accaggggacggcggcgcggtcgacgatgtcctcgagggtctggaagacgagcttgctgt 593 ||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||| Sbjct: 133183 accaggggacggcggcgcggtcgacgatggtctcgagcgtctcgaagacgagcttgctgt 133242 Query: 594 cgacgaggaagcgcaggtagccctcgacggtgggctcccacctggcgacggggggcgcct 653 ||||||||||||| |||||||| || |||| ||||||||||||||| || || ||||||| Sbjct: 133243 cgacgaggaagcggaggtagccgtccacggagggctcccacctggccaccggcggcgcct 133302 Query: 654 ggggctccttctccccctccctggcctggtcctttggtgtgcaggcgcatggc 706 | |||||||||||||| ||| ||||||||||| ||||||||||| |||||||| Sbjct: 133303 gcggctccttctccccttccttggcctggtcc-ttggtgtgcagccgcatggc 133354 Score = 97.6 bits (49), Expect = 5e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 225 tgcggacattctgcagcagctgagacagggtaccttcccacttgtagaactccagctctt 284 |||||||||||||||||||||| ||||| | || ||||| ||||||||||||||||| | Sbjct: 130077 tgcggacattctgcagcagctgggacagattgccctcccatttgtagaactccagctcct 130136 Query: 285 tcttgttcagaatcttctcag 305 ||||||||||||| ||||||| Sbjct: 130137 tcttgttcagaatattctcag 130157 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 149 aacgacttctcggtctcctccaggcagtggtccttctcttcccgagaccagct 201 ||||||||||| || || |||||||| ||||||||||| ||||| | |||||| Sbjct: 129887 aacgacttctccgtttcatccaggcaatggtccttctcctcccgggtccagct 129939
>gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxygenase 1 (Z576C20.3), anthocyanin biosynthesis regulatory protein Pl1_B73 (Z576C20.4), putative growth-regulating factor 1 (Z576C20.6), and putative aminoalcoholphosphotransferase (Z576C20.14) genes, complete cds; and putative receptor protein kinase (Z576C20.21) gene, partial cds Length = 155173 Score = 174 bits (88), Expect = 3e-40 Identities = 183/212 (86%), Gaps = 2/212 (0%) Strand = Plus / Minus Query: 311 tttttgccaatcattcggcctccagcagtatgagcaaagtacacattatagaagtggcag 370 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct: 33105 tttttgccaatcattcggcctccagcagtatgagcaaagtacacgttatagaaatggcag 33046 Query: 371 ataaatgcttgggggtccttctcagacaactcttccagatag-gaagcatatgcagtacc 429 ||||| || |||||||||| |||||||| |||||||| ||| |||| |||| || || Sbjct: 33045 ataaaggcctgggggtcctcctcagacagatcttccag-tagagaagtgtatgtggtgcc 32987 Query: 430 agcagcagttggttctggaatggtgtgaccctgttccgtgaaccattccagatctttctt 489 || || | ||||| |||||| ||||| ||||||| | |||||||||||||||| || || Sbjct: 32986 aggggccgatggttttggaattgtgtggccctgttgcctgaaccattccagatcattttt 32927 Query: 490 cagtggctctgatctctctaacccagtattcc 521 ||||| |||||||||||| | || |||||||| Sbjct: 32926 cagtgcctctgatctctccagcctagtattcc 32895 Score = 113 bits (57), Expect = 8e-22 Identities = 84/93 (90%) Strand = Plus / Minus Query: 109 tcaggtgaatatctggcgtaggaggtcccctgagtaggcaaacgacttctcggtctcctc 168 |||||||||||| ||||| |||||| | |||||||| | ||||||||||| |||||||| Sbjct: 33734 tcaggtgaatatatggcggaggaggcctcctgagtaagagaacgacttctccgtctcctc 33675 Query: 169 caggcagtggtccttctcttcccgagaccagct 201 |||||||||||||||||| |||||||||||||| Sbjct: 33674 caggcagtggtccttctcctcccgagaccagct 33642 Score = 69.9 bits (35), Expect = 1e-08 Identities = 71/83 (85%) Strand = Plus / Minus Query: 203 gaagcgacttggtttagtgtggtgcggacattctgcagcagctgagacagggtaccttcc 262 |||||||||||||| || || ||||||| |||||||||||||| || || | || ||| Sbjct: 33529 gaagcgacttggttaagcttgttgcggacgttctgcagcagctgggagagattgccctcc 33470 Query: 263 cacttgtagaactccagctcttt 285 ||||||||||||||||| ||||| Sbjct: 33469 cacttgtagaactccaggtcttt 33447
>gb|AF473906.1| Nicotiana tabacum heme oxygenase 1 (HO1) mRNA, partial cds Length = 285 Score = 97.6 bits (49), Expect = 5e-17 Identities = 133/161 (82%) Strand = Plus / Minus Query: 230 acattctgcagcagctgagacagggtaccttcccacttgtagaactccagctctttcttg 289 |||||||||||||||||||| ||| ||| ||||| |||||||| |||||||||||||| Sbjct: 206 acattctgcagcagctgagaaaggtcaccgtcccatttgtagaattccagctctttctta 147 Query: 290 ttcagaatcttctcagcaacctttttgccaatcattcggcctccagcagtatgagcaaag 349 || || ||||| ||||| |||||| | || ||||| || |||||||| | ||| |||||| Sbjct: 146 ttgagtatcttttcagccacctttctccctatcatgcgacctccagctgaatgcgcaaag 87 Query: 350 tacacattatagaagtggcagataaatgcttgggggtcctt 390 || || || |||||||| ||||||||||| || ||||| Sbjct: 86 tatgtgttgtaaaagtggcaaataaatgcttgaggatcctt 46
>gb|AF320024.1|AF320024 Glycine max heme oxygenase 1 (HO1) mRNA, partial cds; nuclear gene for chloroplast product Length = 931 Score = 93.7 bits (47), Expect = 8e-16 Identities = 119/143 (83%) Strand = Plus / Minus Query: 260 tcccacttgtagaactccagctctttcttgttcagaatcttctcagcaacctttttgcca 319 ||||| ||||||||||||| | | || ||||| || | ||| |||||||||||||| ||| Sbjct: 603 tcccatttgtagaactccaacgccttgttgttaagtaacttttcagcaacctttttccca 544 Query: 320 atcattcggcctccagcagtatgagcaaagtacacattatagaagtggcagataaatgct 379 |||||||| || ||||| | |||||||||||| | ||| || || ||||| || |||||| Sbjct: 543 atcattcgaccaccagctgaatgagcaaagtagatattgtaaaaatggcaaatgaatgct 484 Query: 380 tgggggtccttctcagacaactc 402 ||||| |||||| |||| ||||| Sbjct: 483 tggggatccttcacagataactc 461 Score = 48.1 bits (24), Expect = 0.040 Identities = 27/28 (96%) Strand = Plus / Minus Query: 658 ctccttctccccctccctggcctggtcc 685 ||||||||| |||||||||||||||||| Sbjct: 196 ctccttctcgccctccctggcctggtcc 169
>gb|AF320025.1|AF320025 Glycine max heme oxygenase 3 (HO3) mRNA, partial cds; nuclear gene for chloroplast product Length = 890 Score = 77.8 bits (39), Expect = 4e-11 Identities = 117/143 (81%) Strand = Plus / Minus Query: 260 tcccacttgtagaactccagctctttcttgttcagaatcttctcagcaacctttttgcca 319 ||||| ||||||||||||| | || ||||| || | ||| |||||||||||||| ||| Sbjct: 599 tcccatttgtagaactccaatgccttgttgttaagtaacttttcagcaacctttttccca 540 Query: 320 atcattcggcctccagcagtatgagcaaagtacacattatagaagtggcagataaatgct 379 |||||||| || ||||| | |||||||||||| | || || |||||||| || |||||| Sbjct: 539 atcattcgaccaccagctgaatgagcaaagtagatgttgtaaaagtggcaaatgaatgct 480 Query: 380 tgggggtccttctcagacaactc 402 || || |||||| |||| ||||| Sbjct: 479 tgaggatccttcacagataactc 457 Score = 48.1 bits (24), Expect = 0.040 Identities = 27/28 (96%) Strand = Plus / Minus Query: 658 ctccttctccccctccctggcctggtcc 685 ||||||||| |||||||||||||||||| Sbjct: 192 ctccttctcgccctccctggcctggtcc 165 Score = 40.1 bits (20), Expect = 9.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 167 tccaggcagtggtccttctcttcccgag 194 ||||| ||||||||||| |||||||||| Sbjct: 692 tccagacagtggtccttttcttcccgag 665
>gb|AF320030.1|AF320030 Pinus taeda heme oxygenase 1 (HO1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1550 Score = 73.8 bits (37), Expect = 7e-10 Identities = 85/101 (84%) Strand = Plus / Minus Query: 293 agaatcttctcagcaacctttttgccaatcattcggcctccagcagtatgagcaaagtac 352 ||||| || ||||||||||| | |||||||| ||||||||||||||||| ||||| || Sbjct: 939 agaattttttcagcaaccttcctcccaatcatccggcctccagcagtatgtgcaaaatat 880 Query: 353 acattatagaagtggcagataaatgcttgggggtccttctc 393 |||||||| ||||| || | ||||||| | ||||| ||||| Sbjct: 879 acattataaaagtgacacaaaaatgctggtgggtctttctc 839
>ref|NM_128224.2| Arabidopsis thaliana HY1 (HEME OXYGENASE 1) AT2G26670 (HY1) mRNA, complete cds Length = 1159 Score = 67.9 bits (34), Expect = 4e-08 Identities = 109/134 (81%) Strand = Plus / Minus Query: 260 tcccacttgtagaactccagctctttcttgttcagaatcttctcagcaacctttttgcca 319 ||||| ||||||||||| || ||||| || | || ||| ||| || |||||| ||||| Sbjct: 830 tcccatttgtagaactcgagttctttattatcgagtatccgctctgccacctttctgcca 771 Query: 320 atcattcggcctccagcagtatgagcaaagtacacattatagaagtggcagataaatgct 379 |||||||| || |||||| ||||||||||||| | || |||||||| || || |||||| Sbjct: 770 atcattcgtccaccagcactatgagcaaagtagatgttgtagaagtgacaaatgaatgct 711 Query: 380 tgggggtccttctc 393 || || |||||||| Sbjct: 710 tgaggatccttctc 697
>gb|AF327418.1| Arabidopsis thaliana putative heme oxygenase HO1 (At2g26670) mRNA, partial cds Length = 944 Score = 67.9 bits (34), Expect = 4e-08 Identities = 109/134 (81%) Strand = Plus / Minus Query: 260 tcccacttgtagaactccagctctttcttgttcagaatcttctcagcaacctttttgcca 319 ||||| ||||||||||| || ||||| || | || ||| ||| || |||||| ||||| Sbjct: 656 tcccatttgtagaactcgagttctttattatcgagtatccgctctgccacctttctgcca 597 Query: 320 atcattcggcctccagcagtatgagcaaagtacacattatagaagtggcagataaatgct 379 |||||||| || |||||| ||||||||||||| | || |||||||| || || |||||| Sbjct: 596 atcattcgtccaccagcactatgagcaaagtagatgttgtagaagtgacaaatgaatgct 537 Query: 380 tgggggtccttctc 393 || || |||||||| Sbjct: 536 tgaggatccttctc 523
>gb|AY129477.1| Arabidopsis thaliana At2g26670/F18A8.4 mRNA, complete cds Length = 723 Score = 67.9 bits (34), Expect = 4e-08 Identities = 109/134 (81%) Strand = Plus / Minus Query: 260 tcccacttgtagaactccagctctttcttgttcagaatcttctcagcaacctttttgcca 319 ||||| ||||||||||| || ||||| || | || ||| ||| || |||||| ||||| Sbjct: 572 tcccatttgtagaactcgagttctttattatcgagtatccgctctgccacctttctgcca 513 Query: 320 atcattcggcctccagcagtatgagcaaagtacacattatagaagtggcagataaatgct 379 |||||||| || |||||| ||||||||||||| | || |||||||| || || |||||| Sbjct: 512 atcattcgtccaccagcactatgagcaaagtagatgttgtagaagtgacaaatgaatgct 453 Query: 380 tgggggtccttctc 393 || || |||||||| Sbjct: 452 tgaggatccttctc 439
>gb|AC003105.3| Arabidopsis thaliana chromosome 2 clone F18A8 map B68, complete sequence Length = 95167 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 308 acctttttgccaatcattcggcctccagcagtatgagcaaagtacacattatagaagtgg 367 |||||| ||||||||||||| || |||||| ||||||||||||| | || |||||||| Sbjct: 13112 acctttctgccaatcattcgtccaccagcactatgagcaaagtagatgttgtagaagtga 13053 Query: 368 cagataaatgcttgggggtccttctc 393 || || |||||||| || |||||||| Sbjct: 13052 caaatgaatgcttgaggatccttctc 13027
>gb|AF375414.1| Arabidopsis thaliana At2g26670/F18A8.4 mRNA, complete cds Length = 928 Score = 67.9 bits (34), Expect = 4e-08 Identities = 109/134 (81%) Strand = Plus / Minus Query: 260 tcccacttgtagaactccagctctttcttgttcagaatcttctcagcaacctttttgcca 319 ||||| ||||||||||| || ||||| || | || ||| ||| || |||||| ||||| Sbjct: 656 tcccatttgtagaactcgagttctttattatcgagtatccgctctgccacctttctgcca 597 Query: 320 atcattcggcctccagcagtatgagcaaagtacacattatagaagtggcagataaatgct 379 |||||||| || |||||| ||||||||||||| | || |||||||| || || |||||| Sbjct: 596 atcattcgtccaccagcactatgagcaaagtagatgttgtagaagtgacaaatgaatgct 537 Query: 380 tgggggtccttctc 393 || || |||||||| Sbjct: 536 tgaggatccttctc 523
>emb|BX821245.1|CNS0A8BU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL29ZA08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 941 Score = 67.9 bits (34), Expect = 4e-08 Identities = 109/134 (81%) Strand = Plus / Minus Query: 260 tcccacttgtagaactccagctctttcttgttcagaatcttctcagcaacctttttgcca 319 ||||| ||||||||||| || ||||| || | || ||| ||| || |||||| ||||| Sbjct: 632 tcccatttgtagaactcgagttctttattatcgagtatccgctctgccacctttctgcca 573 Query: 320 atcattcggcctccagcagtatgagcaaagtacacattatagaagtggcagataaatgct 379 |||||||| || |||||| ||||||||||||| | || |||||||| || || |||||| Sbjct: 572 atcattcgtccaccagcactatgagcaaagtagatgttgtagaagtgacaaatgaatgct 513 Query: 380 tgggggtccttctc 393 || || |||||||| Sbjct: 512 tgaggatccttctc 499
>gb|AY087288.1| Arabidopsis thaliana clone 33692 mRNA, complete sequence Length = 1092 Score = 67.9 bits (34), Expect = 4e-08 Identities = 109/134 (81%) Strand = Plus / Minus Query: 260 tcccacttgtagaactccagctctttcttgttcagaatcttctcagcaacctttttgcca 319 ||||| ||||||||||| || ||||| || | || ||| ||| || |||||| ||||| Sbjct: 795 tcccatttgtagaactcgagttctttattatcgagtatccgctctgccacctttctgcca 736 Query: 320 atcattcggcctccagcagtatgagcaaagtacacattatagaagtggcagataaatgct 379 |||||||| || |||||| ||||||||||||| | || |||||||| || || |||||| Sbjct: 735 atcattcgtccaccagcactatgagcaaagtagatgttgtagaagtgacaaatgaatgct 676 Query: 380 tgggggtccttctc 393 || || |||||||| Sbjct: 675 tgaggatccttctc 662
>gb|BT002327.1| Arabidopsis thaliana clone C104983 putative heme oxygenase HO1 (At2g26670) mRNA, complete cds Length = 880 Score = 67.9 bits (34), Expect = 4e-08 Identities = 109/134 (81%) Strand = Plus / Minus Query: 260 tcccacttgtagaactccagctctttcttgttcagaatcttctcagcaacctttttgcca 319 ||||| ||||||||||| || ||||| || | || ||| ||| || |||||| ||||| Sbjct: 698 tcccatttgtagaactcgagttctttattatcgagtatccgctctgccacctttctgcca 639 Query: 320 atcattcggcctccagcagtatgagcaaagtacacattatagaagtggcagataaatgct 379 |||||||| || |||||| ||||||||||||| | || |||||||| || || |||||| Sbjct: 638 atcattcgtccaccagcactatgagcaaagtagatgttgtagaagtgacaaatgaatgct 579 Query: 380 tgggggtccttctc 393 || || |||||||| Sbjct: 578 tgaggatccttctc 565
>gb|AF132476.1|AF132476 Arabidopsis thaliana cultivar Ler heme oxygenase 1 (HO1) gene, nuclear gene encoding chloroplast protein, complete cds Length = 2117 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 308 acctttttgccaatcattcggcctccagcagtatgagcaaagtacacattatagaagtgg 367 |||||| ||||||||||||| || |||||| ||||||||||||| | || |||||||| Sbjct: 1787 acctttctgccaatcattcgtccaccagcactatgagcaaagtagatgttgtagaagtga 1728 Query: 368 cagataaatgcttgggggtccttctc 393 || || |||||||| || |||||||| Sbjct: 1727 caaatgaatgcttgaggatccttctc 1702
>gb|AF132475.1|AF132475 Arabidopsis thaliana cultivar Col-0 heme oxygenase 1 (HO1) gene, nuclear gene encoding chloroplast protein, complete cds Length = 3270 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 308 acctttttgccaatcattcggcctccagcagtatgagcaaagtacacattatagaagtgg 367 |||||| ||||||||||||| || |||||| ||||||||||||| | || |||||||| Sbjct: 2417 acctttctgccaatcattcgtccaccagcactatgagcaaagtagatgttgtagaagtga 2358 Query: 368 cagataaatgcttgggggtccttctc 393 || || |||||||| || |||||||| Sbjct: 2357 caaatgaatgcttgaggatccttctc 2332
>dbj|AB021858.1| Arabidopsis thaliana HY1 mRNA for plastid heme oxygenase, complete cds Length = 1069 Score = 67.9 bits (34), Expect = 4e-08 Identities = 109/134 (81%) Strand = Plus / Minus Query: 260 tcccacttgtagaactccagctctttcttgttcagaatcttctcagcaacctttttgcca 319 ||||| ||||||||||| || ||||| || | || ||| ||| || |||||| ||||| Sbjct: 751 tcccatttgtagaactcgagttctttattatcgagtatccgctctgccacctttctgcca 692 Query: 320 atcattcggcctccagcagtatgagcaaagtacacattatagaagtggcagataaatgct 379 |||||||| || |||||| ||||||||||||| | || |||||||| || || |||||| Sbjct: 691 atcattcgtccaccagcactatgagcaaagtagatgttgtagaagtgacaaatgaatgct 632 Query: 380 tgggggtccttctc 393 || || |||||||| Sbjct: 631 tgaggatccttctc 618
>dbj|AB021857.1| Arabidopsis thaliana HY1 gene for plastid heme oxygenase, complete cds Length = 2867 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 308 acctttttgccaatcattcggcctccagcagtatgagcaaagtacacattatagaagtgg 367 |||||| ||||||||||||| || |||||| ||||||||||||| | || |||||||| Sbjct: 2339 acctttctgccaatcattcgtccaccagcactatgagcaaagtagatgttgtagaagtga 2280 Query: 368 cagataaatgcttgggggtccttctc 393 || || |||||||| || |||||||| Sbjct: 2279 caaatgaatgcttgaggatccttctc 2254
>ref|NM_104610.1| Arabidopsis thaliana oxidoreductase AT1G58300 mRNA, complete cds Length = 855 Score = 63.9 bits (32), Expect = 7e-07 Identities = 98/120 (81%) Strand = Plus / Minus Query: 260 tcccacttgtagaactccagctctttcttgttcagaatcttctcagcaacctttttgcca 319 ||||| ||||||||||| || ||||| |||| || ||||||||||| |||||| | ||| Sbjct: 701 tcccatttgtagaactcgagttctttattgtcgagtatcttctcagctacctttgtccca 642 Query: 320 atcattcggcctccagcagtatgagcaaagtacacattatagaagtggcagataaatgct 379 |||||||| || ||||| |||| ||||||| | || |||||||| ||||| |||||| Sbjct: 641 atcattcgaccaccagcgctatgtgcaaagttaatgttgtagaagtgacagatgaatgct 582
>gb|DQ446372.1| Arabidopsis thaliana clone pENTR221-At1g58300 heme oxygenase (At1g58300) mRNA, complete cds Length = 852 Score = 63.9 bits (32), Expect = 7e-07 Identities = 98/120 (81%) Strand = Plus / Minus Query: 260 tcccacttgtagaactccagctctttcttgttcagaatcttctcagcaacctttttgcca 319 ||||| ||||||||||| || ||||| |||| || ||||||||||| |||||| | ||| Sbjct: 701 tcccatttgtagaactcgagttctttattgtcgagtatcttctcagctacctttgtccca 642 Query: 320 atcattcggcctccagcagtatgagcaaagtacacattatagaagtggcagataaatgct 379 |||||||| || ||||| |||| ||||||| | || |||||||| ||||| |||||| Sbjct: 641 atcattcgaccaccagcgctatgtgcaaagttaatgttgtagaagtgacagatgaatgct 582
>gb|AF320028.1|AF320028 Lycopersicon esculentum heme oxygenase 1 (HO1) gene, complete cds; nuclear gene for chloroplast product Length = 3080 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 230 acattctgcagcagctgagacagggtaccttcccacttgtagaactccagctctttcttg 289 |||||||||||||||||||| || || ||||| |||||||| ||||||||||||||| Sbjct: 2791 acattctgcagcagctgagaaagatcgccgtcccatttgtagaattccagctctttcttg 2732 Query: 290 t 290 | Sbjct: 2731 t 2731 Score = 48.1 bits (24), Expect = 0.040 Identities = 39/44 (88%) Strand = Plus / Minus Query: 308 acctttttgccaatcattcggcctccagcagtatgagcaaagta 351 |||||||| || ||||| ||||||||||| | |||||||||||| Sbjct: 1846 acctttttccctatcatgcggcctccagctgaatgagcaaagta 1803
>emb|AJ550944.1|MCH550944 Momordica charantia partial mRNA for putative heme oxygenase 1 (ho1 gene) Length = 512 Score = 56.0 bits (28), Expect = 2e-04 Identities = 85/104 (81%) Strand = Plus / Minus Query: 308 acctttttgccaatcattcggcctccagcagtatgagcaaagtacacattatagaagtgg 367 |||||| | |||||||| || || || ||||| || |||||||| | ||||||||| ||| Sbjct: 191 acctttctcccaatcatccgaccaccggcagtgtgggcaaagtatatattatagaaatgg 132 Query: 368 cagataaatgcttgggggtccttctcagacaactcttccagata 411 || ||||||||||| || || || || || |||||||| ||||| Sbjct: 131 caaataaatgcttgaggatcgttttctgataactcttcaagata 88 Score = 42.1 bits (21), Expect = 2.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 155 ttctcggtctcctccaggcagtggtccttctcttccc 191 |||||||| ||||||||||| |||| |||||| |||| Sbjct: 344 ttctcggtttcctccaggcaatggttcttctcctccc 308
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 542 acggcggcgcggtcgacgatgtcctcgagggtctgga 578 |||||||||||||||||| | ||||| |||||||||| Sbjct: 8173064 acggcggcgcggtcgacggtctcctccagggtctgga 8173028
>emb|AJ489941.1|PPA489941 Physcomitrella patens mRNA for heme oxygenase (ho1 gene) Length = 1449 Score = 48.1 bits (24), Expect = 0.040 Identities = 33/36 (91%) Strand = Plus / Minus Query: 340 atgagcaaagtacacattatagaagtggcagataaa 375 |||||||||||| ||||| || |||||||||||||| Sbjct: 984 atgagcaaagtaaacattgtaaaagtggcagataaa 949
>gb|AF320027.1|AF320027 Sorghum bicolor heme oxygenase 2 (HO2) mRNA, partial cds; nuclear gene for chloroplast product Length = 1444 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 260 tcccacttgtagaactccagctc 282 ||||||||||||||||||||||| Sbjct: 836 tcccacttgtagaactccagctc 814
>ref|XM_521103.1| PREDICTED: Pan troglodytes similar to START domain containing 8 (LOC465682), mRNA Length = 5119 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Plus Query: 644 gggggcgcctggggctccttctcccc 669 |||||||||||||||||| ||||||| Sbjct: 447 gggggcgcctggggctccctctcccc 472
>ref|XM_421974.1| PREDICTED: Gallus gallus similar to integrin alpha-4 subunit (LOC424121), mRNA Length = 4968 Score = 44.1 bits (22), Expect = 0.63 Identities = 28/30 (93%) Strand = Plus / Minus Query: 259 ttcccacttgtagaactccagctctttctt 288 |||||||||||| |||||||||||| |||| Sbjct: 3665 ttcccacttgtaaaactccagctctctctt 3636
>emb|AL360076.9| Human DNA sequence from clone RP13-469L5 on chromosome X Contains the 3' end of the STARD8 gene for START domain containing 8 and a CpG island, complete sequence Length = 62516 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Plus Query: 644 gggggcgcctggggctccttctcccc 669 |||||||||||||||||| ||||||| Sbjct: 17427 gggggcgcctggggctccctctcccc 17452
>emb|BX932808.1| Gallus gallus finished cDNA, clone ChEST266k15 Length = 801 Score = 44.1 bits (22), Expect = 0.63 Identities = 28/30 (93%) Strand = Plus / Minus Query: 259 ttcccacttgtagaactccagctctttctt 288 |||||||||||| |||||||||||| |||| Sbjct: 456 ttcccacttgtaaaactccagctctctctt 427
>gb|BC085162.1| Mus musculus DnaJ (Hsp40) homolog, subfamily B, member 10, mRNA (cDNA clone IMAGE:30536273), complete cds Length = 4942 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 162 tctcctccaggcagtggtccttctc 186 ||||||||||| ||||||||||||| Sbjct: 2528 tctcctccaggaagtggtccttctc 2552
>gb|AC166150.2| Mus musculus chromosome 1, clone RP23-321N22, complete sequence Length = 214765 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 162 tctcctccaggcagtggtccttctc 186 ||||||||||| ||||||||||||| Sbjct: 126420 tctcctccaggaagtggtccttctc 126396
>gb|AC161346.7| Mus musculus chromosome 1, clone RP24-335G4, complete sequence Length = 191681 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 162 tctcctccaggcagtggtccttctc 186 ||||||||||| ||||||||||||| Sbjct: 54883 tctcctccaggaagtggtccttctc 54907
>gb|AC122439.4| Mus musculus BAC clone RP24-222B4 from chromosome 3, complete sequence Length = 159703 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 473 cattccagatctttcttcagt 493 ||||||||||||||||||||| Sbjct: 12106 cattccagatctttcttcagt 12086
>dbj|AK172263.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830111E12 product:unclassifiable, full insert sequence Length = 3887 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 162 tctcctccaggcagtggtccttctc 186 ||||||||||| ||||||||||||| Sbjct: 2862 tctcctccaggaagtggtccttctc 2886
>gb|AC161454.3| Mus musculus BAC clone RP23-332F10 from chromosome 3, complete sequence Length = 228486 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 473 cattccagatctttcttcagt 493 ||||||||||||||||||||| Sbjct: 27725 cattccagatctttcttcagt 27705
>gb|AC158233.2| Mus musculus BAC clone RP23-240E15 from chromosome 3, complete sequence Length = 209923 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 473 cattccagatctttcttcagt 493 ||||||||||||||||||||| Sbjct: 16362 cattccagatctttcttcagt 16382
>dbj|AK037818.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130052G10 product:SH2 domain protein 2A, full insert sequence Length = 1874 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 473 cattccagatctttcttcagt 493 ||||||||||||||||||||| Sbjct: 523 cattccagatctttcttcagt 543
>gb|AF074605.1|AF074605 Gallus gallus integrin alpha4 subunit, mRNA sequence Length = 3813 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 259 ttcccacttgtagaactccagctct 283 |||||||||||| |||||||||||| Sbjct: 3569 ttcccacttgtaaaactccagctct 3545
>dbj|AP006385.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT39K18, TM0252a, complete sequence Length = 42219 Score = 42.1 bits (21), Expect = 2.5 Identities = 63/77 (81%) Strand = Plus / Minus Query: 308 acctttttgccaatcattcggcctccagcagtatgagcaaagtacacattatagaagtgg 367 |||||||| || |||||||| || ||||| | ||| |||||||| | || ||||||||| Sbjct: 19179 acctttttcccgatcattcgaccaccagctgaatgggcaaagtagatgttgtagaagtgg 19120 Query: 368 cagataaatgcttgggg 384 || || || |||||||| Sbjct: 19119 caaatgaaggcttgggg 19103 Score = 40.1 bits (20), Expect = 9.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 167 tccaggcagtggtccttctcttcccgag 194 ||||| ||||||| |||||||||||||| Sbjct: 20193 tccagacagtggttcttctcttcccgag 20166 Score = 40.1 bits (20), Expect = 9.8 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 662 ttctccccctccctggcctggtcctttggtgtgcag 697 ||||| |||||| ||||||||||| ||||||||||| Sbjct: 17490 ttctcaccctccttggcctggtcc-ttggtgtgcag 17456
>gb|AY204570.2| Canis familiaris 5-HT1A receptor (HTR1A) gene, complete cds Length = 1347 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 gacggcggcgcggtcgacga 560 |||||||||||||||||||| Sbjct: 1275 gacggcggcgcggtcgacga 1294
>gb|AY739093.1| Takifugu rubripes frMUT, frGPR136L1, and frGPR136L2 genes, complete sequence; frRUNX2 (frRUNX2) gene, complete cds; and frCLIC5, frENPP5, frPHIP, frIRAK1BP1, and frTBX18 genes, complete sequence Length = 235024 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 658 ctccttctccccctccctgg 677 |||||||||||||||||||| Sbjct: 28753 ctccttctccccctccctgg 28772
>ref|NM_186891.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1487 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 657 gctccttctccccctccctg 676 |||||||||||||||||||| Sbjct: 1110 gctccttctccccctccctg 1091
>ref|XM_365992.1| Magnaporthe grisea 70-15 hypothetical protein (MG10212.4) partial mRNA Length = 1410 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 tctgcagcagctgagacagg 253 |||||||||||||||||||| Sbjct: 1237 tctgcagcagctgagacagg 1218
>ref|NM_011305.3| Mus musculus retinoid X receptor alpha (Rxra), mRNA Length = 5267 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 tctggaagacgagcttgctgtcga 596 |||||||| ||||||||||||||| Sbjct: 952 tctggaagccgagcttgctgtcga 975
>ref|XM_976705.1| PREDICTED: Mus musculus retinoid X receptor alpha (Rxra), mRNA Length = 1727 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 tctggaagacgagcttgctgtcga 596 |||||||| ||||||||||||||| Sbjct: 768 tctggaagccgagcttgctgtcga 791
>ref|XM_990117.1| PREDICTED: Mus musculus retinoid X receptor alpha (Rxra), mRNA Length = 5042 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 tctggaagacgagcttgctgtcga 596 |||||||| ||||||||||||||| Sbjct: 726 tctggaagccgagcttgctgtcga 749
>gb|AC121768.2| Mus musculus BAC clone RP23-339H16 from 15, complete sequence Length = 199607 Score = 40.1 bits (20), Expect = 9.8 Identities = 29/31 (93%), Gaps = 2/31 (6%) Strand = Plus / Plus Query: 650 gcctggggctccttctccccctccctggcct 680 |||||||||||| ||||||||||||||||| Sbjct: 126407 gcctggggctcc--ctccccctccctggcct 126435
>gb|AC004981.2| Homo sapiens PAC clone RP5-1159C10 from 7, complete sequence Length = 149687 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 ataaatgcttgggggtcctt 390 |||||||||||||||||||| Sbjct: 10911 ataaatgcttgggggtcctt 10892
>gb|AC145866.3| Pan troglodytes BAC clone RP43-21B7 from 7, complete sequence Length = 189814 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 cttcagtggctctgatctct 506 |||||||||||||||||||| Sbjct: 86174 cttcagtggctctgatctct 86193
>emb|AJ627421.1| Uncultured crenarchaeote genomic fragment 68f19 Length = 35501 Score = 40.1 bits (20), Expect = 9.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 275 tccagctctttcttgttcagaatcttct 302 ||||| |||||||| ||||||||||||| Sbjct: 9049 tccagatctttcttattcagaatcttct 9076
>ref|XM_788015.1| PREDICTED: Strongylocentrotus purpuratus similar to solute carrier family 16 (monocarboxylic acid transporters), member 12 (LOC588325), partial mRNA Length = 1275 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 568 gagggtctggaagacgagct 587 |||||||||||||||||||| Sbjct: 474 gagggtctggaagacgagct 493
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2 Length = 178000 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 692 gtgcaggcgcatggcgacggcccc 715 ||||||||||||| |||||||||| Sbjct: 105955 gtgcaggcgcatgccgacggcccc 105932
>emb|X66223.1|MMRXRAMR M.musculus mRNA for retinoid X receptor-alpha (mRXR-alpha) Length = 2088 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 tctggaagacgagcttgctgtcga 596 |||||||| ||||||||||||||| Sbjct: 897 tctggaagccgagcttgctgtcga 920
>gb|AC004844.1| Homo sapiens PAC clone RP4-613I23 from 7p11-p13, complete sequence Length = 141895 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 cttcagtggctctgatctct 506 |||||||||||||||||||| Sbjct: 59639 cttcagtggctctgatctct 59658
>gb|DQ007005.1| Babesia sp. WA1 clone WA1-HSP70 heat shock protein 70-like protein mRNA, complete cds Length = 2190 Score = 40.1 bits (20), Expect = 9.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 417 catatgcagtaccagcagcagttggttc 444 |||||||| || |||||||||||||||| Sbjct: 681 catatgcaatagcagcagcagttggttc 654
>dbj|AK144675.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730022A05 product:retinoid X receptor alpha, full insert sequence Length = 4882 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 tctggaagacgagcttgctgtcga 596 |||||||| ||||||||||||||| Sbjct: 954 tctggaagccgagcttgctgtcga 977
>gb|AF295364.1|AF295364 Arabidopsis thaliana heme oxygenase 1-like protein gene, partial cds; and glutamyl-tRNA reductase (HEMA1) gene, promoter and partial cds Length = 2690 Score = 40.1 bits (20), Expect = 9.8 Identities = 44/52 (84%) Strand = Plus / Minus Query: 260 tcccacttgtagaactccagctctttcttgttcagaatcttctcagcaacct 311 ||||| ||||||||||| || ||||| |||| || ||||||||||| |||| Sbjct: 489 tcccatttgtagaactcgagttctttattgtcgagtatcttctcagctacct 438
>gb|AF320023.1|AF320023 Arabidopsis thaliana heme oxygenase 4 (HO4) gene, complete cds; nuclear gene for chloroplast product Length = 3594 Score = 40.1 bits (20), Expect = 9.8 Identities = 44/52 (84%) Strand = Plus / Minus Query: 260 tcccacttgtagaactccagctctttcttgttcagaatcttctcagcaacct 311 ||||| ||||||||||| || ||||| |||| || ||||||||||| |||| Sbjct: 1900 tcccatttgtagaactcgagttctttattgtcgagtatcttctcagctacct 1849
>dbj|AK031034.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5832416E11 product:retinoid X receptor alpha, full insert sequence Length = 4755 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 tctggaagacgagcttgctgtcga 596 |||||||| ||||||||||||||| Sbjct: 821 tctggaagccgagcttgctgtcga 844
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 cgatgtcctcgagggtctgg 577 |||||||||||||||||||| Sbjct: 2144804 cgatgtcctcgagggtctgg 2144823
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 657 gctccttctccccctccctg 676 |||||||||||||||||||| Sbjct: 8862743 gctccttctccccctccctg 8862724
>gb|AC008051.3|F19C14 Sequence of BAC F19C14 from Arabidopsis thaliana chromosome 1, complete sequence Length = 86014 Score = 40.1 bits (20), Expect = 9.8 Identities = 44/52 (84%) Strand = Plus / Minus Query: 260 tcccacttgtagaactccagctctttcttgttcagaatcttctcagcaacct 311 ||||| ||||||||||| || ||||| |||| || ||||||||||| |||| Sbjct: 61622 tcccatttgtagaactcgagttctttattgtcgagtatcttctcagctacct 61571
>dbj|AP005051.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0458G06 Length = 139109 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 657 gctccttctccccctccctg 676 |||||||||||||||||||| Sbjct: 92843 gctccttctccccctccctg 92824
>emb|AL772166.15| Mouse DNA sequence from clone RP23-413I12 on chromosome 2, complete sequence Length = 184547 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 tctggaagacgagcttgctgtcga 596 |||||||| ||||||||||||||| Sbjct: 138748 tctggaagccgagcttgctgtcga 138771
>ref|XM_319604.2| Anopheles gambiae str. PEST ENSANGP00000006401 (ENSANGG00000004858), partial mRNA Length = 2844 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 gacattctgcagcagctgag 248 |||||||||||||||||||| Sbjct: 2131 gacattctgcagcagctgag 2150
>gb|AF187726.1|AF187726 Platichthys flesus heat shock protein Hsp70 (hsp70) mRNA, partial cds Length = 698 Score = 40.1 bits (20), Expect = 9.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 417 catatgcagtaccagcagcagttggttc 444 |||||||| || |||||||||||||||| Sbjct: 340 catatgcaatagcagcagcagttggttc 313
>dbj|AK063314.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-G06, full insert sequence Length = 1487 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 657 gctccttctccccctccctg 676 |||||||||||||||||||| Sbjct: 1110 gctccttctccccctccctg 1091
>emb|CT025692.15| Mouse DNA sequence from clone RP23-312G18 on chromosome 17, complete sequence Length = 177741 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 666 ccccctccctggcctggtcc 685 |||||||||||||||||||| Sbjct: 133060 ccccctccctggcctggtcc 133041
>gb|AY609786.1| Sus scrofa clone Clu_3100.scr.msk.p1.Contig1, mRNA sequence Length = 1233 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 651 cctggggctccttctccccc 670 |||||||||||||||||||| Sbjct: 934 cctggggctccttctccccc 953
>emb|AL672074.19| Mouse DNA sequence from clone RP23-404I18 on chromosome X, complete sequence Length = 171593 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 tgcagcagctgagacagggt 255 |||||||||||||||||||| Sbjct: 77380 tgcagcagctgagacagggt 77399
>gb|U77684.1|MMU77684 Mus musculus RXR alpha 3 (RXR alpha) mRNA, complete cds Length = 1881 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 tctggaagacgagcttgctgtcga 596 |||||||| ||||||||||||||| Sbjct: 813 tctggaagccgagcttgctgtcga 836
>gb|U77683.1|MMU77683 Mus musculus RXR alpha 2 (RXR alpha) mRNA, complete cds Length = 1851 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 tctggaagacgagcttgctgtcga 596 |||||||| ||||||||||||||| Sbjct: 783 tctggaagccgagcttgctgtcga 806
>gb|AY134445.1| Canis familiaris serotonin receptor 1A (HTR1A) gene, complete cds Length = 1339 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 gacggcggcgcggtcgacga 560 |||||||||||||||||||| Sbjct: 1293 gacggcggcgcggtcgacga 1312
>gb|AC006130.2| Homo sapiens chromosome 19, BAC CIT-B-191n6, complete sequence Length = 73994 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 actccagctctttcttgttc 292 |||||||||||||||||||| Sbjct: 45095 actccagctctttcttgttc 45076
>emb|AL773591.7| Pig DNA sequence from clone XX-35B1, complete sequence Length = 118404 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 651 cctggggctccttctccccc 670 |||||||||||||||||||| Sbjct: 52865 cctggggctccttctccccc 52884
>emb|AJ009611.6|HSAJ9611 Homo sapiens chromosome 19 sequence from PAC RPCI-1 155I10, complete sequence Length = 112022 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 actccagctctttcttgttc 292 |||||||||||||||||||| Sbjct: 86345 actccagctctttcttgttc 86326
>gb|M84817.1|MUSRXRA Mouse retinoid X receptor alpha (RXR-alpha) mRNA, complete cds Length = 1883 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 tctggaagacgagcttgctgtcga 596 |||||||| ||||||||||||||| Sbjct: 815 tctggaagccgagcttgctgtcga 838
>dbj|AP000344.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1269D1 Length = 186421 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 660 ccttctccccctccctggcctggt 683 ||||||| |||||||||||||||| Sbjct: 61501 ccttctctccctccctggcctggt 61524 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,207,588 Number of Sequences: 3902068 Number of extensions: 6207588 Number of successful extensions: 122669 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 122282 Number of HSP's gapped (non-prelim): 380 length of query: 715 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 692 effective length of database: 17,143,297,704 effective search space: 11863162011168 effective search space used: 11863162011168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)