ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3k03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1K0427_HUMAN (O43310) Protein KIAA0427 29 8.7
2K0427_MOUSE (Q6PEE2) Protein KIAA0427 homolog 29 8.7
3LGT_MYCGA (Q7NAE3) Prolipoprotein diacylglyceryl transferase (EC... 29 8.7
4CYB_ARTJA (Q95738) Cytochrome b 29 8.7
5TILS_MYCH2 (Q601M6) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR... 29 8.7

>K0427_HUMAN (O43310) Protein KIAA0427|
          Length = 598

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = -1

Query: 246 FICYVQLTMRVQTGERFRVFIASVLFAVGFCCIQFMGFRRNECCFLKWREKKEICYLWCG 67
           F+C V  TMR  TGE FRV +  +     + C++ +         L+ ++ KE   L C 
Sbjct: 480 FLCEVFGTMRSSTGEPFRVLVCPI-----YTCLREL---------LQSQDVKEDAVLCCS 525

Query: 66  LQL 58
           ++L
Sbjct: 526 MEL 528



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>K0427_MOUSE (Q6PEE2) Protein KIAA0427 homolog|
          Length = 623

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = -1

Query: 246 FICYVQLTMRVQTGERFRVFIASVLFAVGFCCIQFMGFRRNECCFLKWREKKEICYLWCG 67
           F+C V  TMR  TGE FRV +  +     + C++ +         L+ ++ KE   L C 
Sbjct: 505 FLCEVFGTMRSSTGEPFRVLVCPI-----YTCLREL---------LQSQDVKEDAVLCCS 550

Query: 66  LQL 58
           ++L
Sbjct: 551 MEL 553



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>LGT_MYCGA (Q7NAE3) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 369

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 19/73 (26%), Positives = 38/73 (52%)
 Frame = -1

Query: 234 VQLTMRVQTGERFRVFIASVLFAVGFCCIQFMGFRRNECCFLKWREKKEICYLWCGLQLT 55
           ++L +  Q   +F+ F+ S++ +V F     +GF   +  F ++R KK   +L+  +++ 
Sbjct: 259 IRLIIETQRDSQFK-FVTSIVTSVLFLLGGSIGFIFTQWIFPRFRNKKNYFFLFNKVKIY 317

Query: 54  RLDDRSNYLYIYK 16
            +    NYL  YK
Sbjct: 318 FIGLFKNYLNKYK 330



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>CYB_ARTJA (Q95738) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 88  FLFLPPFQETALIPAKTHKLYTTETNSKEH*GNENSKSFARLHPH 222
           F FLPPF  TAL+    H L+  ET S    G  +       HP+
Sbjct: 181 FHFLPPFIVTALV--MVHLLFLHETGSNNPTGIPSDPDMIHSHPY 223



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>TILS_MYCH2 (Q601M6) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 297

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 114 FLKWREKKEICYLWCGLQLTRLDDRSNYLYIYKMQQ 7
           FL WR KK+I  +    ++  LDD+SN+   Y+  Q
Sbjct: 145 FLYWRTKKQIIRICQQKKIPYLDDQSNFTGKYQRNQ 180


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,424,264
Number of Sequences: 219361
Number of extensions: 1551073
Number of successful extensions: 4279
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4270
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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