ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal3j16 |
|---|---|
| Clone Library Name | barley_pub |
>SAHH2_MOUSE (Q80SW1) Putative adenosylhomocysteinase 2 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 2) (AdoHcyase 2) (S-adenosylhomocysteine hydrolase-like 1) (IP3R-binding protein released with inositol 1,4,5-trisphosphate) Length = 530 Score = 32.7 bits (73), Expect = 0.66 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Frame = +2 Query: 272 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 415 AA A +A W G +WW C DGWQ DG LT +++++ Sbjct: 188 AALAEAGVAVFAWKGESEDDFWWCIDRCVNMDGWQANMILDDGGDLTHWVYKK 240
>SAHH2_HUMAN (O43865) Putative adenosylhomocysteinase 2 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 2) (AdoHcyase 2) (S-adenosylhomocysteine hydrolase-like 1) (DC-expressed AHCY-like molecule) Length = 530 Score = 32.7 bits (73), Expect = 0.66 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Frame = +2 Query: 272 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 415 AA A +A W G +WW C DGWQ DG LT +++++ Sbjct: 188 AALAEAGVAVFAWKGESEDDFWWCIDRCVNMDGWQANMILDDGGDLTHWVYKK 240
>CSW_DROSI (Q8ISC9) Tyrosine-protein phosphatase corkscrew (EC 3.1.3.48)| (Fragment) Length = 555 Score = 31.6 bits (70), Expect = 1.5 Identities = 23/60 (38%), Positives = 28/60 (46%) Frame = +2 Query: 128 RPSFSHSKAQRKHSSALHSPRCNAKRGPGETGFYFQSQHKR*KRDTNLAATARKEIAGLL 307 R S S SK +R SSA SP + GPG +G S TNL + +AGLL Sbjct: 66 RKSDSLSKHKRSESSASSSPSSGSGSGPGSSGTSGVSSVNGPGTPTNLTSGTAGCLAGLL 125
>TCF20_MOUSE (Q9EPQ8) Transcription factor 20 (Stromelysin 1 PDGF-responsive| element-binding protein) (SPRE-binding protein) (Nuclear factor SPBP) Length = 1983 Score = 30.8 bits (68), Expect = 2.5 Identities = 20/59 (33%), Positives = 25/59 (42%) Frame = -1 Query: 536 RPLPEPTGSP*GGPCLWDPGTRGMPETTPSGAPMRCRARGLSSKGSSSAEDHPTDARPS 360 +PLP+ TG P G P R P T PS A + R SSA + + PS Sbjct: 205 QPLPQTTGQPASGSSHLQPMQR--PSTLPSSAGYQLRVGQFGQHYQSSASSSSSSSFPS 261
>VPRA_DENPO (P25687) Intestinal toxin 1 (Mamba intestinal toxin 1) (MIT 1)| (MIT1) (Venom protein A) Length = 81 Score = 30.8 bits (68), Expect = 2.5 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = +3 Query: 411 GEPSRPASHRCAGRGRFGHATCPWVPEARAASRAPR 518 GE PASH+ G+ H TCP P +P+ Sbjct: 38 GEDCHPASHKIPFSGQRMHHTCPCAPNLACVQTSPK 73
>RECO_GEOSL (Q74FM9) DNA repair protein recO (Recombination protein O)| Length = 243 Score = 30.4 bits (67), Expect = 3.3 Identities = 26/75 (34%), Positives = 27/75 (36%), Gaps = 4/75 (5%) Frame = +3 Query: 288 RRSPDYCXXXXXXXVDDAKRQMDGRRAGVGGMVLS*RASFGGEPSRPAS----HRCAGRG 455 R S D C DA RRAG G VL G P + HRC G G Sbjct: 147 RLSLDACAACGVEFPADA-----ARRAGAAGTVLCTGCGRYGAPLSAETVRLLHRCLGTG 201 Query: 456 RFGHATCPWVPEARA 500 RFG P P A Sbjct: 202 RFGAIVFPPEPLGEA 216
>IP3KC_HUMAN (Q96DU7) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol| 1,4,5-trisphosphate 3-kinase C) (InsP 3-kinase C) (IP3K-C) Length = 683 Score = 30.4 bits (67), Expect = 3.3 Identities = 22/56 (39%), Positives = 25/56 (44%) Frame = +1 Query: 367 RASVGWSSADELPLEESPLARHLIGAPEGVVSGMPRVPGSQRHGPPHGLPVGSGSG 534 R S+ + A LP AR + AP G G R PG QR GP G P G G Sbjct: 7 RGSLNEAEAGALPAA----ARMGLEAPRG---GRRRQPGQQRPGPGAGAPAGRPEG 55
>CSW_DROME (P29349) Tyrosine-protein phosphatase corkscrew (EC 3.1.3.48)| Length = 845 Score = 30.0 bits (66), Expect = 4.3 Identities = 22/60 (36%), Positives = 27/60 (45%) Frame = +2 Query: 128 RPSFSHSKAQRKHSSALHSPRCNAKRGPGETGFYFQSQHKR*KRDTNLAATARKEIAGLL 307 R S S SK +R SSA SP + GPG +G S TNL + + GLL Sbjct: 356 RKSDSLSKHKRSESSASSSPSSGSGSGPGSSGTSGVSSVNGPGTPTNLTSGTAGCLVGLL 415
>CCNL1_BRARE (Q7ZVX0) Cyclin-L1| Length = 498 Score = 30.0 bits (66), Expect = 4.3 Identities = 19/45 (42%), Positives = 22/45 (48%) Frame = +2 Query: 71 GK*HGRLGSHTNNTKHIYHRPSFSHSKAQRKHSSALHSPRCNAKR 205 GK H R S + +T HR SHS HSS SPR A+R Sbjct: 365 GKNHSR--SRSRSTSRSPHRHRRSHSGTYSSHSSHSPSPRQKARR 407
>YNK2_CAEEL (P34553) Hypothetical protein R10E12.2| Length = 395 Score = 29.6 bits (65), Expect = 5.6 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +2 Query: 56 P*DSTGK*HGRLGSHTNNTKHIYHRPSFSHSKAQRKHSSALH 181 P DS HG GSH N H+Y+ H + Q H S ++ Sbjct: 298 PLDSASSLHGSGGSHQN--PHMYNSHHHQHQQQQNAHPSEMY 337
>URB1_USTMA (P40349) Siderophore biosynthesis regulatory protein URBS1| Length = 950 Score = 29.6 bits (65), Expect = 5.6 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Frame = -1 Query: 521 PTGSP*GGPCLWDPGTR----GMPETTPSGAPMRCRARGLSSKGSSSAEDHPTDARPSA 357 PTGS G P GTR + + P AP R +A S+ SSS +D PSA Sbjct: 862 PTGSAQGSPGADARGTRSGHDSIKQEAPDAAPRRSKA--FSNSSSSSEKDELESPPPSA 918
>BRD3_HUMAN (Q15059) Bromodomain-containing protein 3 (RING3-like protein)| Length = 726 Score = 29.6 bits (65), Expect = 5.6 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -1 Query: 482 PGTRGMPETTPSGAPMRCRARGLSSKGSSSAEDHPTDARPS 360 P + P + PSG P R + S GSSS+ +D+ S Sbjct: 685 PARKEKPGSAPSGGPSRLSSSSSSESGSSSSSGSSSDSSDS 725
>CLK1_MOUSE (P22518) Dual specificity protein kinase CLK1 (EC 2.7.12.1)| (CDC-like kinase 1) (Protein kinase STY) Length = 483 Score = 29.6 bits (65), Expect = 5.6 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +2 Query: 128 RPSFSHSKAQRKHSSALHSPRCNAKRGPGETGFYFQSQ 241 R S SH + +R HSSA RC +Y +S+ Sbjct: 23 RSSSSHKRKKRSHSSAREQKRCRYDHSKTTDSYYLESR 60
>RPOC_SYMTH (Q67JT4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1179 Score = 29.3 bits (64), Expect = 7.3 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +3 Query: 93 ARTQITQSIYIIVQVSHTRKPKGNTAVLFTLPAAMRSEDRGRLDFIFNHNTSDERETQTW 272 A ITQ + + ++ RKPKG + +E +GR + TS++ E+ T+ Sbjct: 924 AGDDITQGLPRVEELFEARKPKGQAIIAELDGEVSITEQKGRREITI---TSEDGESVTY 980 Query: 273 QRPPGRR 293 P G R Sbjct: 981 SIPYGAR 987
>SAHH3_MOUSE (Q68FL4) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3) Length = 613 Score = 29.3 bits (64), Expect = 7.3 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Frame = +2 Query: 272 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 415 AA A W G +WW C +GWQ DG LT +++++ Sbjct: 271 AALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKK 323
>SAHH3_HUMAN (Q96HN2) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3) Length = 611 Score = 29.3 bits (64), Expect = 7.3 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Frame = +2 Query: 272 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 415 AA A W G +WW C +GWQ DG LT +++++ Sbjct: 269 AALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKK 321
>SYFB_VIBVY (Q7MK40) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 795 Score = 29.3 bits (64), Expect = 7.3 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = -1 Query: 254 FIACVVIENKIQSPPVLASHCSG-ESEEHCCVSFGLSSVRNLDDDIYALCYLCASPSGH 81 FI C EN ++ P+LA +G SEEH + +L D+ A+ L A+ + Sbjct: 576 FIPCDTAENGMRQEPMLAGVIAGTRSEEHWNIDTNTVDFFDLKGDVEAILELSANDKAY 634
>SYFB_VIBVU (Q8DA39) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 795 Score = 29.3 bits (64), Expect = 7.3 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = -1 Query: 254 FIACVVIENKIQSPPVLASHCSG-ESEEHCCVSFGLSSVRNLDDDIYALCYLCASPSGH 81 FI C EN ++ P+LA +G SEEH + +L D+ A+ L A+ + Sbjct: 576 FIPCDTAENGMRQEPMLAGVIAGTRSEEHWNIDTNTVDFFDLKGDVEAILELSANDKAY 634
>SAHH3_PONPY (Q5R889) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3) Length = 508 Score = 29.3 bits (64), Expect = 7.3 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Frame = +2 Query: 272 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 415 AA A W G +WW C +GWQ DG LT +++++ Sbjct: 166 AALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKK 218
>PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane intrinsic| protein 1.2) (OsPIP1.2) Length = 282 Score = 29.3 bits (64), Expect = 7.3 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -1 Query: 458 TTPSGAPMRCRARGLSSKGSSSAEDHPTDARPSA 357 TT S RC ++G SS+G S+A+ P+ PS+ Sbjct: 26 TTRSRRRRRCSSQGSSSRGPSTAQGSPSSWPPSS 59
>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)| (Helicase-like protein NHL) Length = 1400 Score = 29.3 bits (64), Expect = 7.3 Identities = 13/32 (40%), Positives = 14/32 (43%) Frame = -3 Query: 492 PLGPRDTWHARNDPFRRTYEMPGERALLQRKL 397 P P D W P E+PG LLQR L Sbjct: 1366 PRQPHDVWPVSTAPLHAVLELPGALPLLQRPL 1397
>CBIJ_METTH (O27083) Probable cobalt-precorrin-6A reductase (EC 1.3.1.-)| Length = 302 Score = 29.3 bits (64), Expect = 7.3 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 10/55 (18%) Frame = +2 Query: 401 FLWRR-ALSPGIS*VRRKGSFR-----ACHVSLGP----RGTGRLTGSPWALVVA 535 +LWRR ++PG V+RKGS R + V G R RL+G PW V A Sbjct: 13 YLWRRKTMNPGDKGVKRKGSDRQREKMSVIVMAGTEDARRIISRLSGMPWVEVTA 67
>NR1D1_HUMAN (P20393) Orphan nuclear receptor NR1D1 (V-erbA-related protein| EAR-1) (Rev-erbA-alpha) Length = 614 Score = 28.9 bits (63), Expect = 9.5 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%) Frame = +3 Query: 417 PSRPASHRCAGRGRFGHATCPW----VPEARAASRAPR 518 P PA H C GH CP PE +A + +PR Sbjct: 370 PPGPAHHSCHQSNSNGHRLCPTHVYAAPEGKAPANSPR 407
>TECT2_RAT (Q3B7D3) Tectonic-2 precursor| Length = 700 Score = 28.9 bits (63), Expect = 9.5 Identities = 14/28 (50%), Positives = 15/28 (53%) Frame = +3 Query: 405 FGGEPSRPASHRCAGRGRFGHATCPWVP 488 FGG S P+ HRCA R H T W P Sbjct: 207 FGGYVSPPSHHRCAARTT--HQTPDWFP 232
>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing| protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1 ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral sclerosis 2 chromosomal region candidate 9 gene protein) Length = 1302 Score = 28.9 bits (63), Expect = 9.5 Identities = 20/58 (34%), Positives = 25/58 (43%) Frame = -1 Query: 533 PLPEPTGSP*GGPCLWDPGTRGMPETTPSGAPMRCRARGLSSKGSSSAEDHPTDARPS 360 P P PT SP PG + ++P G + SS SSS +HP RPS Sbjct: 992 PPPPPTASPTPDKS-GSPGKKTSKTSSPGGKKPPPTPQRNSSIKSSSGAEHPEPKRPS 1048
>COAT_SOUV3 (Q04542) Capsid protein (Coat protein)| Length = 546 Score = 28.9 bits (63), Expect = 9.5 Identities = 14/32 (43%), Positives = 14/32 (43%) Frame = -1 Query: 527 PEPTGSP*GGPCLWDPGTRGMPETTPSGAPMR 432 P P G P G C W P T SG PMR Sbjct: 318 PAPVGFPDFGKCDWHMRISKTPNNTGSGDPMR 349 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,881,471 Number of Sequences: 219361 Number of extensions: 1934452 Number of successful extensions: 6618 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 6117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6609 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
