ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal3j05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017217.1| Zea mays clone EL01N0372E04.c mRNA sequence Length = 1252 Score = 155 bits (78), Expect = 2e-34 Identities = 160/186 (86%), Gaps = 1/186 (0%) Strand = Plus / Minus Query: 302 gccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggc 361 ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| || || Sbjct: 880 gccctctttcttgatcctagacggcctgacaatacggtcgatgatcccgtactcgagagc 821 Query: 362 tccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatg 421 ||||||||||||||||||||| ||| |||| |||||| || | |||||| |||||||| Sbjct: 820 cccttcggcgtcgaagcgcttcaccctagacaggtcctcatggatcttctcgacagaatg 761 Query: 422 accccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttg 481 || |||||| | || ||||||||||| |||||||||||||| || |||| ||||||| Sbjct: 760 -gcctgtgtgccccgcgagcttgccatagagatagttcttgatgcggataagctcgtttg 702 Query: 482 attcgt 487 ||||| Sbjct: 701 cttcgt 696
>gb|AY105451.1| Zea mays PCO122767 mRNA sequence Length = 709 Score = 155 bits (78), Expect = 2e-34 Identities = 160/186 (86%), Gaps = 1/186 (0%) Strand = Plus / Minus Query: 302 gccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggc 361 ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| || || Sbjct: 493 gccctctttcttgatcctagacggcctgacaatacggtcgatgatcccgtactcgagagc 434 Query: 362 tccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatg 421 ||||||||||||||||||||| ||| |||| |||||| || | |||||| |||||||| Sbjct: 433 cccttcggcgtcgaagcgcttcaccctagacaggtcctcatggatcttctcgacagaatg 374 Query: 422 accccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttg 481 || |||||| | || ||||||||||| |||||||||||||| || |||| ||||||| Sbjct: 373 -gcctgtgtgccccgcgagcttgccatagagatagttcttgatgcggataagctcgtttg 315 Query: 482 attcgt 487 ||||| Sbjct: 314 cttcgt 309
>dbj|AK104375.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G04, full insert sequence Length = 1133 Score = 85.7 bits (43), Expect = 1e-13 Identities = 146/179 (81%), Gaps = 1/179 (0%) Strand = Plus / Minus Query: 303 ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 362 |||||||||||||| ||||||||||| | |||||||| || ||||| || |||| ||| Sbjct: 876 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 817 Query: 363 ccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatga 422 ||||| || |||||||||||| ||| || | || || |||| ||| ||||||| |||| Sbjct: 816 ccttcagcatcgaagcgcttcaccctagatagatcttcatgaatcttatcaacaggatga 757 Query: 423 ccccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttg 481 || |||||||||| | ||||| ||||||||||||||||||| | ||||||| |||| Sbjct: 756 -cctgtgtgctctgacaacttgctgtaaagatagttcttgatcctaataagttcatttg 699 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 245 catctactagccgagtcccagattccgcagttccttctt 283 |||||||||||| ||||||||||| || || |||||||| Sbjct: 928 catctactagccaagtcccagattacgtagatccttctt 890
>dbj|AK099815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L17, full insert sequence Length = 1243 Score = 85.7 bits (43), Expect = 1e-13 Identities = 146/179 (81%), Gaps = 1/179 (0%) Strand = Plus / Minus Query: 303 ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 362 |||||||||||||| ||||||||||| | |||||||| || ||||| || |||| ||| Sbjct: 894 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 835 Query: 363 ccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatga 422 ||||| || |||||||||||| ||| || | || || |||| ||| ||||||| |||| Sbjct: 834 ccttcagcatcgaagcgcttcaccctagatagatcttcatgaatcttatcaacaggatga 775 Query: 423 ccccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttg 481 || |||||||||| | ||||| ||||||||||||||||||| | ||||||| |||| Sbjct: 774 -cctgtgtgctctgacaacttgctgtaaagatagttcttgatcctaataagttcatttg 717 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 245 catctactagccgagtcccagattccgcagttccttctt 283 |||||||||||| ||||||||||| || || |||||||| Sbjct: 946 catctactagccaagtcccagattacgtagatccttctt 908
>dbj|AK061385.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-A01, full insert sequence Length = 1133 Score = 85.7 bits (43), Expect = 1e-13 Identities = 146/179 (81%), Gaps = 1/179 (0%) Strand = Plus / Minus Query: 303 ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 362 |||||||||||||| ||||||||||| | |||||||| || ||||| || |||| ||| Sbjct: 876 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 817 Query: 363 ccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatga 422 ||||| || |||||||||||| ||| || | || || |||| ||| ||||||| |||| Sbjct: 816 ccttcagcatcgaagcgcttcaccctagatagatcttcatgaatcttatcaacaggatga 757 Query: 423 ccccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttg 481 || |||||||||| | ||||| ||||||||||||||||||| | ||||||| |||| Sbjct: 756 -cctgtgtgctctgacaacttgctgtaaagatagttcttgatcctaataagttcatttg 699 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 245 catctactagccgagtcccagattccgcagttccttctt 283 |||||||||||| ||||||||||| || || |||||||| Sbjct: 928 catctactagccaagtcccagattacgtagatccttctt 890
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 303 ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 362 |||||||||||||| ||||||||||| | |||||||| || ||||| || |||| ||| Sbjct: 1951928 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 1951869 Query: 363 ccttcggcgtcgaagcgcttc 383 ||||| || |||||||||||| Sbjct: 1951868 ccttcagcatcgaagcgcttc 1951848 Score = 50.1 bits (25), Expect = 0.007 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand = Plus / Minus Query: 405 accttctcaacagaatgaccccgtgtgctctgctagcttgccataaagatagttcttgat 464 ||||| ||||||| |||||| |||||||||| | ||||| ||||||||||||||||| Sbjct: 1951551 accttatcaacaggatgacct-gtgtgctctgacaacttgctgtaaagatagttcttgat 1951493 Query: 465 ccgattaagttcgtttg 481 || | ||||||| |||| Sbjct: 1951492 cctaataagttcatttg 1951476 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 245 catctactagccgagtcccagattccgcagttccttctt 283 |||||||||||| ||||||||||| || || |||||||| Sbjct: 1951980 catctactagccaagtcccagattacgtagatccttctt 1951942
>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548D03 Length = 156709 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 303 ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 362 |||||||||||||| ||||||||||| | |||||||| || ||||| || |||| ||| Sbjct: 80708 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 80649 Query: 363 ccttcggcgtcgaagcgcttc 383 ||||| || |||||||||||| Sbjct: 80648 ccttcagcatcgaagcgcttc 80628 Score = 50.1 bits (25), Expect = 0.007 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand = Plus / Minus Query: 405 accttctcaacagaatgaccccgtgtgctctgctagcttgccataaagatagttcttgat 464 ||||| ||||||| |||||| |||||||||| | ||||| ||||||||||||||||| Sbjct: 80331 accttatcaacaggatgacct-gtgtgctctgacaacttgctgtaaagatagttcttgat 80273 Query: 465 ccgattaagttcgtttg 481 || | ||||||| |||| Sbjct: 80272 cctaataagttcatttg 80256 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 245 catctactagccgagtcccagattccgcagttccttctt 283 |||||||||||| ||||||||||| || || |||||||| Sbjct: 80760 catctactagccaagtcccagattacgtagatccttctt 80722
>emb|AL354738.13| Human DNA sequence from clone RP11-628O6 on chromosome 9 Contains part of a novel gene (FLJ20276), complete sequence Length = 64981 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 129 caacagattaaatgacatacatcca 153 |||||||||||||||||| |||||| Sbjct: 28635 caacagattaaatgacatccatcca 28659
>gb|AC161286.2| Pan troglodytes BAC clone CH251-332L6 from chromosome 7, complete sequence Length = 172473 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gtacatatgaaagaacagag 62 |||||||||||||||||||| Sbjct: 153229 gtacatatgaaagaacagag 153248
>gb|AC161005.4| Pan troglodytes BAC clone CH251-668M6 from chromosome 7, complete sequence Length = 217746 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gtacatatgaaagaacagag 62 |||||||||||||||||||| Sbjct: 16612 gtacatatgaaagaacagag 16631
>gb|AC125160.3| Mus musculus BAC clone RP24-409P4 from chromosome 7, complete sequence Length = 178643 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 gtacatatgaaagaacagagaaga 66 ||||| |||||||||||||||||| Sbjct: 66718 gtacaaatgaaagaacagagaaga 66695
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 tcgatgatcccgtactccagggct 362 |||| ||||||||||||||||||| Sbjct: 2015193 tcgaggatcccgtactccagggct 2015170
>gb|AC161386.4| Pan troglodytes BAC clone CH251-497P4 from chromosome 7, complete sequence Length = 193048 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gtacatatgaaagaacagag 62 |||||||||||||||||||| Sbjct: 83471 gtacatatgaaagaacagag 83490
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ggccggtggtcgagccgccc 305 |||||||||||||||||||| Sbjct: 5922373 ggccggtggtcgagccgccc 5922392
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 aagcgcttcgacctggacaa 394 |||||||||||||||||||| Sbjct: 3943555 aagcgcttcgacctggacaa 3943574 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,093,336 Number of Sequences: 3902068 Number of extensions: 3093336 Number of successful extensions: 55160 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55006 Number of HSP's gapped (non-prelim): 149 length of query: 487 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 465 effective length of database: 17,147,199,772 effective search space: 7973447893980 effective search space used: 7973447893980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
