ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal3i14 |
|---|---|
| Clone Library Name | barley_pub |
>HSBH1_SOYBN (P46608) Homeobox protein SBH1| Length = 379 Score = 37.4 bits (85), Expect = 0.009 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 6/79 (7%) Frame = +2 Query: 101 SIQHESNHNHNTTQNHDELA*Y**HNHTSLGWILTYCTQTFYSSELTDRHHIHHSENHMD 280 SI +NHN+N T + D +N+T LG +Y E +D HH HH N+ + Sbjct: 70 SIMLHNNHNNNKTDDDDN------NNNTGLG---------YYFME-SDHHHHHHGNNNNN 113 Query: 281 GNCSCRSQET------AHP 319 G+ S S AHP Sbjct: 114 GSSSSSSSSAVKAKIMAHP 132
>KNOB_PLAFG (P09346) Knob-associated histidine-rich protein precursor (KAHRP)| (KP) Length = 634 Score = 32.7 bits (73), Expect = 0.22 Identities = 16/56 (28%), Positives = 24/56 (42%) Frame = +2 Query: 107 QHESNHNHNTTQNHDELA*Y**HNHTSLGWILTYCTQTFYSSELTDRHHIHHSENH 274 QHE +H+H+ H A + H+H G + Q D+ H HH +H Sbjct: 60 QHEHHHHHHHQHQHQHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHHHH 115
>KNOB_PLAFA (P13817) Knob-associated histidine-rich protein precursor (KAHRP)| (HRPI) (Fragment) Length = 473 Score = 32.7 bits (73), Expect = 0.22 Identities = 16/56 (28%), Positives = 24/56 (42%) Frame = +2 Query: 107 QHESNHNHNTTQNHDELA*Y**HNHTSLGWILTYCTQTFYSSELTDRHHIHHSENH 274 QHE +H+H+ H A + H+H G + Q D+ H HH +H Sbjct: 60 QHEHHHHHHHQHQHQHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHHHH 115
>ZFP90_RAT (Q4V8A8) Zinc finger protein 90 (Zfp-90)| Length = 633 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = +2 Query: 209 CTQTF-YSSELTDRHHIHHSENHMDGNCSCRSQETAHPSGEAGPCQVNG 352 C + F + ++ T+ IH EN D + R Q +HP + C V G Sbjct: 452 CGKDFSHITDFTEHQRIHAGENSYDSEQALRQQSLSHPREKPYQCNVCG 500
>YB88_YEAST (P38330) Protein YBR238C| Length = 731 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 19/77 (24%) Frame = +2 Query: 119 NHNHNTTQNHDELA*Y**HNHTSLG-------------WILTYC------TQTFYSSELT 241 NH+HN +NH + HNH+ W C +QT Y S+ Sbjct: 105 NHHHNNNRNHHQNN----HNHSKYNNSNQGNSISPDSPWFHKVCAFEDCVSQTLYMSQTP 160 Query: 242 DRHHIHHSENHMDGNCS 292 R ++ H H + N + Sbjct: 161 RRQNMKHHSEHPNSNAN 177
>Y4495_PHOPR (Q6LK12) UPF0060 membrane protein PBPRB0495| Length = 110 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Frame = -2 Query: 285 LPSIWFSE*-CIWCLSVSSEE*NVWVQYVSIQPRLVWLCYQYYANSS*FCVVLWLWL 118 LP +W E IW L ++ ++ +++ P Y Y F +LWLWL Sbjct: 23 LPYLWLREGKTIWLLIPAAISLALFAWLLTLHPAAAGRVYAAYGGVYIFTAILWLWL 79
>ZBT39_HUMAN (O15060) Zinc finger and BTB domain-containing protein 39| Length = 712 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Frame = +2 Query: 197 ILTYCTQTFYSSELTDRHH--IHHSENHMDGNCSCRSQETAHPSGE 328 +L C TF E T R SE+H G SC S E AHP GE Sbjct: 114 LLQACHSTFPDLESTARAKPLTSTSESH-SGTLSCPSAEPAHPLGE 158
>ADA12_HUMAN (O43184) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 12) (Meltrin alpha) Length = 909 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/46 (32%), Positives = 19/46 (41%) Frame = -3 Query: 311 PFPGICMSNYHPYGSLNDVYGVCQSAQKNKMSGCNMSVSNLG*CGC 174 P PGIC + G D YG C K+ + C M + G C Sbjct: 543 PAPGICFERVNSAG---DPYGNCGKVSKSSFAKCEMRDAKCGKIQC 585
>ACDA1_ARCFU (O29165) Acetyl-CoA decarbonylase/synthase complex alpha subunit 1| (EC 1.2.99.2) (ACDS complex alpha subunit 1) (ACDS complex carbon monoxide dehydrogenase 1) (ACDS CODH 1) Length = 802 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Frame = -3 Query: 344 PGMVPLLHLDGPFPGICMSNYHP-YGSLNDVYGVCQSAQKNKMSGCNMSVSNLG*CGCVI 168 PG++ L D + Y P Y + D +C M C++S++ G CG + Sbjct: 41 PGILELRKWDHKL----LERYEPFYAPMQDFCNLCT------MGPCDLSMNKRGACGIDL 90 Query: 167 STMPTRRDFVLCC 129 T R + CC Sbjct: 91 KTAKARLVTIACC 103
>YAC1_MAIZE (P08771) Transposable element activator hypothetical 12 kDa protein| (AC 12 kDa protein) Length = 102 Score = 28.9 bits (63), Expect = 3.1 Identities = 9/23 (39%), Positives = 12/23 (52%) Frame = +2 Query: 80 ISLPWRYSIQHESNHNHNTTQNH 148 + + W + H NHNHN NH Sbjct: 10 VKMIWLLFMNHNHNHNHNQNHNH 32
>ZFP90_HUMAN (Q8TF47) Zinc finger protein 90 homolog (Zfp-90)| Length = 636 Score = 28.9 bits (63), Expect = 3.1 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%) Frame = +2 Query: 101 SIQHESNHNHNTTQNHDELA*Y**HNHTSLGWILTY----CTQTF-YSSELTDRHHIHHS 265 S + + H+T+ DE ++L + +Y C + F + ++ TD IH + Sbjct: 424 SSNYSIDFKHSTSLTQDE---------STLTEVKSYHCNDCGEDFSHITDFTDHQRIHTA 474 Query: 266 ENHMDGNCSCRSQETAHPSGEAGPCQVNG 352 EN D + Q +HP + C V G Sbjct: 475 ENPYDCEQAFSQQAISHPGEKPYQCNVCG 503
>MET18_YEAST (P40469) DNA repair/transcription protein MET18/MMS19| Length = 1032 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 4/54 (7%) Frame = +2 Query: 11 LLXENMCNIKTRLKFM*RVQK----CFISLPWRYSIQHESNHNHNTTQNHDELA 160 L+ E++ + T+L + ++ K CF+ + YS+ + +N N N D LA Sbjct: 591 LVKESITFLATKLNRVAKISKSREYCFLLISTIYSLFNNNNQNENVLNEEDALA 644
>SMS1_CHICK (Q7T3T4) Phosphatidylcholine:ceramide cholinephosphotransferase 1| (EC 2.7.-.-) (Sphingomyelin synthase 1) (MOB protein) Length = 417 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +2 Query: 248 HHIH-HSENHMDGNCSCRSQETAHPSGEAGPCQVNG 352 HHI H H++G+ TAH +G + ++NG Sbjct: 75 HHIEAHKNGHVNGHIHVSVNNTAHENGFSSKTKLNG 110
>HPN_HELPY (P0A0V6) Histidine-rich metal-binding polypeptide| Length = 59 Score = 27.7 bits (60), Expect = 7.0 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +2 Query: 242 DRHHIHHSENHMDGNCS 292 + HH HHS +H +G CS Sbjct: 26 EHHHHHHSSHHEEGCCS 42
>HPN_HELPJ (P0A0V7) Histidine-rich, metal binding polypeptide| Length = 59 Score = 27.7 bits (60), Expect = 7.0 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +2 Query: 242 DRHHIHHSENHMDGNCS 292 + HH HHS +H +G CS Sbjct: 26 EHHHHHHSSHHEEGCCS 42
>ASPA_SYNPX (P59829) Probable aspartoacylase (EC 3.5.1.15)| Length = 303 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -2 Query: 369 LMRIREPLTWHGPASPLGWAVSWDLH 292 L R R+ L WHGP V+ DLH Sbjct: 79 LQRARQLLAWHGPDGATPCRVALDLH 104
>DOT1L_DROME (Q8INR6) Histone-lysine N-methyltransferase, H3 lysine-79 specific| (EC 2.1.1.43) (Histone H3-K79 methyltransferase) (H3-K79-HMTase) (Protein grappa) (DOT1-like protein) (dDOT1L) Length = 1848 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +2 Query: 173 HNHTSLGWILTYCTQTFYSSELTDRHHI-HHSENHMDGNCSCRSQETAH 316 ++H S+G + T + + + HH HHS NH + N R +E ++ Sbjct: 341 NDHESVGTVRTTRDRAKREANVGQHHHNNHHSNNHANSNNHQRDREQSN 389
>DLLB_BRARE (O57409) Delta-like protein B precursor (DeltaB protein)| Length = 615 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +2 Query: 188 LGWILTYCTQTFYSSELTDRHHIHHSENHMDGNCSCR 298 +GW YC+ SS+ ++RH S G C CR Sbjct: 196 VGWQGDYCSDPICSSDCSERHGYCES----PGECKCR 228
>S26A3_MOUSE (Q9WVC8) Chloride anion exchanger (DRA protein) (Down-regulated in| adenoma) (Solute carrier family 26 member 3) Length = 757 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = +2 Query: 206 YCTQTFYSSELTDRHHIHHSE--NHMDGNCSCRSQE 307 Y T+TF E + H HH +H+ G CSC SQ+ Sbjct: 16 YSTKTF--GEEFKKTHRHHKTFLDHLKGCCSCSSQK 49
>YM10_YEAST (Q03880) Hypothetical 14.0 kDa protein in RPL15B-GCR3 intergenic| region Length = 122 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Frame = -2 Query: 213 VQYVSIQPRLVWLCYQYYANS---S*FCVVLWLWLDSCW 106 V +V++ L+WL Y N + FC+ L LW+ W Sbjct: 27 VSFVALLLTLIWLIYATNGNIHFYALFCISLLLWITVIW 65
>CRB_DROME (P10040) Protein crumbs precursor (95F)| Length = 2146 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = +2 Query: 257 HHSENHMDGNCSCRSQETAHPSGEAGPCQVNGSLILISQTHAL 385 +HS H C ++ HP + PC NG+ ++I + AL Sbjct: 334 NHSGQH------CETEVNIHPLCQTNPCLNNGACVVIGGSGAL 370
>SLYD_SHIFL (P0A9L2) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 9/69 (13%) Frame = +2 Query: 176 NHTSLGWILTYCTQTFYSSELTDRH---------HIHHSENHMDGNCSCRSQETAHPSGE 328 NH G L + + E T+ H HH ++ DG C + H G Sbjct: 122 NHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHHDHDHDGCCGGHGHDHGHEHGG 181 Query: 329 AGPCQVNGS 355 G C G+ Sbjct: 182 EGCCGGKGN 190
>SLYD_ECOLI (P0A9K9) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 9/69 (13%) Frame = +2 Query: 176 NHTSLGWILTYCTQTFYSSELTDRH---------HIHHSENHMDGNCSCRSQETAHPSGE 328 NH G L + + E T+ H HH ++ DG C + H G Sbjct: 122 NHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHHDHDHDGCCGGHGHDHGHEHGG 181 Query: 329 AGPCQVNGS 355 G C G+ Sbjct: 182 EGCCGGKGN 190
>SLYD_ECOL6 (P0A9L0) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 9/69 (13%) Frame = +2 Query: 176 NHTSLGWILTYCTQTFYSSELTDRH---------HIHHSENHMDGNCSCRSQETAHPSGE 328 NH G L + + E T+ H HH ++ DG C + H G Sbjct: 122 NHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHHDHDHDGCCGGHGHDHGHEHGG 181 Query: 329 AGPCQVNGS 355 G C G+ Sbjct: 182 EGCCGGKGN 190
>SLYD_ECO57 (P0A9L1) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 9/69 (13%) Frame = +2 Query: 176 NHTSLGWILTYCTQTFYSSELTDRH---------HIHHSENHMDGNCSCRSQETAHPSGE 328 NH G L + + E T+ H HH ++ DG C + H G Sbjct: 122 NHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHHDHDHDGCCGGHGHDHGHEHGG 181 Query: 329 AGPCQVNGS 355 G C G+ Sbjct: 182 EGCCGGKGN 190
>YLF2_CAEEL (Q03572) Hypothetical protein C40H1.2| Length = 208 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 14/55 (25%) Frame = -3 Query: 284 YHPYGSLNDVYGVCQSAQKNKMS-----GCNM---------SVSNLG*CGCVIST 162 Y+ Y LND Y +C+ A N S G NM +++N G GC +T Sbjct: 148 YNNYMRLNDTYQICEEADGNNCSDAVTEGLNMNDHGFYFDINIANWGKDGCPKNT 202 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,923,118 Number of Sequences: 219361 Number of extensions: 1216140 Number of successful extensions: 3081 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2930 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3062 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
