ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3i11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HMEN_ARTSF (Q05640) Homeobox protein engrailed 28 5.2
2INADL_MOUSE (Q63ZW7) InaD-like protein (Inadl protein) (Pals1-as... 28 5.2

>HMEN_ARTSF (Q05640) Homeobox protein engrailed|
          Length = 349

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 152 SDLIQRFHSPLPLS--APSPFKNQPISRAMSQTVELRVGMSCEGCVGAV 12
           S+L +R+  P PLS   P P  ++P S  MS  +    G+S +  +  +
Sbjct: 19  SNLTERYDGPSPLSASTPGPSPDRPGSATMSSPLSSPTGISYQSLLSGI 67



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>INADL_MOUSE (Q63ZW7) InaD-like protein (Inadl protein) (Pals1-associated tight|
           junction protein) (Protein associated to tight
           junctions) (Channel-interacting PDZ domain-containing
           protein)
          Length = 1834

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 155 PSDLIQRFHSPLPLSAPSPFKNQPISRAMSQTVELRVGMSCE 30
           P+D +   HS L L AP  F+++P    +     L +G S +
Sbjct: 797 PADAVHEIHSSLILEAPQGFRDEPYLEELVDEPFLDLGKSLQ 838


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,308,048
Number of Sequences: 219361
Number of extensions: 196411
Number of successful extensions: 927
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 80,573,946
effective HSP length: 29
effective length of database: 74,212,477
effective search space used: 1781099448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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