>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  188 bits (478), Expect(2) = 5e-67
 Identities = 101/126 (80%), Positives = 104/126 (82%)
 Frame = -2

Query: 672 IGVCKGIFQTDNVSDESCRQDRRHLSQDNPLTFSVLCVLGCTTNEVRKWVGSTGIENIGK 493
           IGVCKGIFQTDNVSDES  +        +   F  L       +EVRKWVGSTGIENIGK
Sbjct: 303 IGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRAR-VYDDEVRKWVGSTGIENIGK 361

Query: 492 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 313
           RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK
Sbjct: 362 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 421

Query: 312 TGSFYG 295
           TGSFYG
Sbjct: 422 TGSFYG 427



 Score = 86.3 bits (212), Expect(2) = 5e-67
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = -1

Query: 247 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 134
           GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF
Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  145 bits (366), Expect(2) = 3e-48
 Identities = 77/129 (59%), Positives = 94/129 (72%), Gaps = 3/129 (2%)
 Frame = -2

Query: 672 IGVCKGIFQTDNVSDESCRQDRRHLSQDNP---LTFSVLCVLGCTTNEVRKWVGSTGIEN 502
           IGVCKGIF+TDNV+D+    D   L    P   + F          +EVRKWV   G++ 
Sbjct: 313 IGVCKGIFRTDNVADD----DIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDT 368

Query: 501 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 322
           IGK+LVNS++GP +FEQPKMT++KLL YG MLVQEQ+NVKRVQLAD YMS+AALGDAN D
Sbjct: 369 IGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANND 428

Query: 321 AMKTGSFYG 295
           A+K G+FYG
Sbjct: 429 AIKRGTFYG 437



 Score = 66.6 bits (161), Expect(2) = 3e-48
 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = -1

Query: 250 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 134
           GG+ AQQ G +PVPEGCTD  A NYDPTARSDDGSC+Y F
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  140 bits (353), Expect(2) = 4e-47
 Identities = 77/129 (59%), Positives = 92/129 (71%), Gaps = 3/129 (2%)
 Frame = -2

Query: 672 IGVCKGIFQTDNVSDESCRQDRRHLSQDNP---LTFSVLCVLGCTTNEVRKWVGSTGIEN 502
           IGVCKGIF+TD + DE    D   L    P   + F          +EVRK+V S G+E 
Sbjct: 313 IGVCKGIFRTDKIKDE----DIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEK 368

Query: 501 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 322
           IGKRLVNSR+GP  FEQP+MT EKL+EYG+MLV EQ+NVKRVQLA+TY+SQAALGDAN D
Sbjct: 369 IGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANAD 428

Query: 321 AMKTGSFYG 295
           A+  G+FYG
Sbjct: 429 AIGRGTFYG 437



 Score = 67.8 bits (164), Expect(2) = 4e-47
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -1

Query: 247 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 134
           GKGAQQ  LPVPEGCTD  A+N+DPTARSDDG+C+Y F
Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  138 bits (348), Expect(2) = 2e-45
 Identities = 72/126 (57%), Positives = 91/126 (72%)
 Frame = -2

Query: 672 IGVCKGIFQTDNVSDESCRQDRRHLSQDNPLTFSVLCVLGCTTNEVRKWVGSTGIENIGK 493
           IGVC GIF+TD V  E   +        +   F  L       +EVRKWV S G++N+GK
Sbjct: 311 IGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRAR-VYHDEVRKWVNSVGVDNVGK 369

Query: 492 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 313
           +LVNS+DGP  FEQP+MT++KL+EYG+MLVQEQ+NVKRVQLAD YMS AALGDAN+DA+ 
Sbjct: 370 KLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAID 429

Query: 312 TGSFYG 295
            G+F+G
Sbjct: 430 RGTFFG 435



 Score = 63.9 bits (154), Expect(2) = 2e-45
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = -1

Query: 247 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 140
           GK AQQ +LPV +GCTD  AKNYDPTARSDDGSC Y
Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  159 bits (402), Expect = 7e-39
 Identities = 82/126 (65%), Positives = 96/126 (76%)
 Frame = -2

Query: 672 IGVCKGIFQTDNVSDESCRQDRRHLSQDNPLTFSVLCVLGCTTNEVRKWVGSTGIENIGK 493
           IGVCKGIF+TDNV DE+  +        +   F  L       +EVRKWVG  G+ENI K
Sbjct: 300 IGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRAR-VYDDEVRKWVGEIGVENISK 358

Query: 492 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 313
           RLVNSR+GP TF+QPKMT+EKL+EYGHMLVQEQ+NVKRVQLAD Y+S+AALG AN DAMK
Sbjct: 359 RLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMK 418

Query: 312 TGSFYG 295
           TG+FYG
Sbjct: 419 TGAFYG 424

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  158 bits (400), Expect = 1e-38
 Identities = 81/126 (64%), Positives = 96/126 (76%)
 Frame = -2

Query: 672 IGVCKGIFQTDNVSDESCRQDRRHLSQDNPLTFSVLCVLGCTTNEVRKWVGSTGIENIGK 493
           +GVCKGIF+TDNV DE   +        +   F  L       +EVRKWV  TG+ENIGK
Sbjct: 303 VGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRAR-VYDDEVRKWVSDTGVENIGK 361

Query: 492 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 313
           RLVNSR+GP  FEQPKMT+EKL+EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN DAMK
Sbjct: 362 RLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMK 421

Query: 312 TGSFYG 295
           TGSFYG
Sbjct: 422 TGSFYG 427

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  147 bits (372), Expect = 2e-35
 Identities = 75/125 (60%), Positives = 94/125 (75%)
 Frame = -2

Query: 672 IGVCKGIFQTDNVSDESCRQDRRHLSQDNPLTFSVLCVLGCTTNEVRKWVGSTGIENIGK 493
           IGVCKGIF+TD V +E   Q        +   F  L       +EVR+WV  TG+ENI +
Sbjct: 309 IGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRAR-VYDDEVRRWVSETGVENIAR 367

Query: 492 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 313
           +LVNS++GP TFEQPK+T+EKLLEYGHMLV EQ+NVKRVQLAD Y+++AALG+AN+DAMK
Sbjct: 368 KLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMK 427

Query: 312 TGSFY 298
           TGSF+
Sbjct: 428 TGSFF 432

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  146 bits (368), Expect = 6e-35
 Identities = 77/129 (59%), Positives = 95/129 (73%), Gaps = 3/129 (2%)
 Frame = -2

Query: 672 IGVCKGIFQTDNVSDESCRQDRRHLSQDNP---LTFSVLCVLGCTTNEVRKWVGSTGIEN 502
           IGVC GIF++DNV+ E    D   L    P   + F          +EVRKW+   G+++
Sbjct: 313 IGVCIGIFRSDNVAKE----DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDS 368

Query: 501 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 322
           IGK+LVNS++GP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+S+AALGDAN D
Sbjct: 369 IGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSD 428

Query: 321 AMKTGSFYG 295
           AM TG+FYG
Sbjct: 429 AMNTGTFYG 437

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  145 bits (366), Expect = 1e-34
 Identities = 74/124 (59%), Positives = 93/124 (75%)
 Frame = -2

Query: 672 IGVCKGIFQTDNVSDESCRQDRRHLSQDNPLTFSVLCVLGCTTNEVRKWVGSTGIENIGK 493
           IGVCKGIF+TDNV +E   +        +   F  L       +EVRKWV   G++ IGK
Sbjct: 313 IGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRAR-VYDDEVRKWVSEVGVDTIGK 371

Query: 492 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 313
           +LVNS++GP TFEQPKMT++KLL+YG+MLV+EQ+NVKRVQLAD YMS+AALGDANQDA+K
Sbjct: 372 KLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIK 431

Query: 312 TGSF 301
            G+F
Sbjct: 432 RGTF 435

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  144 bits (362), Expect = 3e-34
 Identities = 76/122 (62%), Positives = 92/122 (75%)
 Frame = -2

Query: 672 IGVCKGIFQTDNVSDESCRQDRRHLSQDNPLTFSVLCVLGCTTNEVRKWVGSTGIENIGK 493
           IGVCKGIF+TDNV +E+  +        +   F  L       +EVRKWV  TGIE IG+
Sbjct: 312 IGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRAR-VYDDEVRKWVSGTGIELIGE 370

Query: 492 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 313
           +L+NSRDGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ 
Sbjct: 371 KLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAIN 430

Query: 312 TG 307
           TG
Sbjct: 431 TG 432

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  144 bits (362), Expect = 3e-34
 Identities = 77/124 (62%), Positives = 92/124 (74%)
 Frame = -2

Query: 672 IGVCKGIFQTDNVSDESCRQDRRHLSQDNPLTFSVLCVLGCTTNEVRKWVGSTGIENIGK 493
           IGVCKGIF+TDNV +E+  +        +   F  L       +EVRKWV  TGIE IG 
Sbjct: 317 IGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRAR-VYDDEVRKWVSGTGIEAIGD 375

Query: 492 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 313
           +L+NS DGP TFEQPKMTVEKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ 
Sbjct: 376 KLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAIN 435

Query: 312 TGSF 301
           TG+F
Sbjct: 436 TGNF 439

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  140 bits (354), Expect = 3e-33
 Identities = 75/125 (60%), Positives = 89/125 (71%)
 Frame = -2

Query: 672 IGVCKGIFQTDNVSDESCRQDRRHLSQDNPLTFSVLCVLGCTTNEVRKWVGSTGIENIGK 493
           IGVC GIF+TDNV  E   +   +    +   F  L       +EVRKWV  TGIE IG 
Sbjct: 317 IGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRAR-VYDDEVRKWVSGTGIEKIGD 375

Query: 492 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 313
           +L+NS DGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+ +AALGDAN DA+ 
Sbjct: 376 KLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAIN 435

Query: 312 TGSFY 298
            GSF+
Sbjct: 436 NGSFF 440

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  135 bits (339), Expect = 1e-31
 Identities = 68/128 (53%), Positives = 94/128 (73%), Gaps = 3/128 (2%)
 Frame = -2

Query: 672 IGVCKGIFQTDNVSDESCRQDRRHLSQDNP---LTFSVLCVLGCTTNEVRKWVGSTGIEN 502
           +GVCKGIF+TD V +E    D   L    P   + F          +EVRKW+   G++ 
Sbjct: 315 VGVCKGIFRTDGVPEE----DITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDA 370

Query: 501 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 322
            GK+LVNS++GP TF+QPKM+++KLL+YG+MLVQEQ+NVKRVQLAD Y+++AALG+AN+D
Sbjct: 371 TGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANED 430

Query: 321 AMKTGSFY 298
           A+K+GSF+
Sbjct: 431 AIKSGSFF 438

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  134 bits (337), Expect = 2e-31
 Identities = 67/126 (53%), Positives = 94/126 (74%), Gaps = 1/126 (0%)
 Frame = -2

Query: 672 IGVCKGIFQTDNVSDESCRQ-DRRHLSQDNPLTFSVLCVLGCTTNEVRKWVGSTGIENIG 496
           IGVCKGIF+TD V ++   +   +H  Q   + F          +EVRKW+   G++++G
Sbjct: 317 IGVCKGIFRTDGVPEKDIVELVDKHPGQS--IDFFGALRARVYDDEVRKWISGVGVDSVG 374

Query: 495 KRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAM 316
           K+LVNS++GP TF+QPKMT++KLL Y  MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+
Sbjct: 375 KKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAI 434

Query: 315 KTGSFY 298
           K+GSF+
Sbjct: 435 KSGSFF 440

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 53/104 (50%), Positives = 66/104 (63%), Gaps = 3/104 (2%)
 Frame = -2

Query: 672 IGVCKGIFQTDNVSDESCRQDRRHLSQDNP---LTFSVLCVLGCTTNEVRKWVGSTGIEN 502
           IG+C GIF+TD V  E    D   L    P   + F          +EVRKW    G+E 
Sbjct: 310 IGICTGIFRTDGVPFE----DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVER 365

Query: 501 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 370
           IG+ LVNS++ P TF+QPKMT+EKLLEYG+MLV EQ+NVKRV+L
Sbjct: 366 IGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 77.8 bits (190), Expect = 3e-14
 Identities = 48/114 (42%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
 Frame = -2

Query: 672 IGVCKGIFQTDNVSDESCRQDRRHLSQDNP---LTFSVLCVLGCTTNEVRKWVGSTGIEN 502
           IGVC GIFQ DNV     R++  +L    P   + F          + VR+W+  TG++ 
Sbjct: 286 IGVCMGIFQEDNVQ----RREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDK 341

Query: 501 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAL 340
           IG++LVN+R   V   +  M +  L++YG  LV EQ+NVKRVQLAD Y+S A L
Sbjct: 342 IGQQLVNARQ-KVAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 31/105 (29%), Positives = 51/105 (48%)
 Frame = -2

Query: 672 IGVCKGIFQTDNVSDESCRQDRRHLSQDNPLTFSVLCVLGCTTNEVRKWVGSTGIENIGK 493
           +G+  GIF  D +S     +        +   FS L        ++R ++   G EN+  
Sbjct: 186 VGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSR-IYDEQIRDFIHQVGYENVSL 244

Query: 492 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTY 358
           R+VNS +GP  F++P  T+  L+E  + +V EQ  ++  QL D Y
Sbjct: 245 RVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289

>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast (RuBisCO activase) (RA) (Fragments)
          Length = 32

 Score = 31.2 bits (69), Expect(2) = 0.001
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -1

Query: 598 FPGQSIDFFGALR 560
           FPGQSIDFFGALR
Sbjct: 5   FPGQSIDFFGALR 17



 Score = 30.8 bits (68), Expect(2) = 0.001
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 477 RDGPVTFEQPKMTVEK 430
           R+GP TFEQP MT+EK
Sbjct: 17  REGPPTFEQPAMTIEK 32

>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -1

Query: 598 FPGQSIDFFGALRARVYD 545
           FP QSIDFF ALR+R+YD
Sbjct: 210 FPKQSIDFFSALRSRIYD 227

>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (eIF3g)
          Length = 320

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 27/99 (27%), Positives = 41/99 (41%)
 Frame = +2

Query: 371 SCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVTGPSREFTSLLPMFSIPVEPTHLRTSFVV 550
           SC R+     WT+ CPY  +   +    ++  G S      LP    PV+ T  +T   V
Sbjct: 156 SC-RICKGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYV 214

Query: 551 HPSTQSTEKVNGLSWERCRRS*RQDSSLTLSVWKIPLQT 667
            PS +      G S +  RR+   D + T+ V  +   T
Sbjct: 215 PPSLRDGASRRGESMQPNRRA---DDNATIRVTNLSEDT 250

>Y778_AQUAE (O66974) Hypothetical UPF0052 protein aq_778|
          Length = 328

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +2

Query: 461 VTGPSREFTSLLPMFSIP-----VEPTHLRTSFVVHPSTQSTEKVNGLSWE 598
           + GP   FTS+LP F +P     V+ +     FVV+  TQ  E  N  +W+
Sbjct: 188 IIGPGSLFTSILPNFLVPQIREAVKESRALKVFVVNVMTQPGETDNFTAWD 238

>LRC24_MOUSE (Q8BHA1) Leucine-rich repeat-containing protein 24 precursor|
          Length = 521

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
 Frame = -2

Query: 600 LSQDNPLTFSVLCVLGCTTNEVR-----KWVGSTGIENIGKRLVNSRDGPVT-FEQPKMT 439
           +S++     S L VL  T N  R      W+GS  I+  G+RL++SRD  +T  E P++ 
Sbjct: 193 ISKEALQPLSSLQVLRLTENPWRCDCALHWLGSW-IKEGGRRLLSSRDKKITCAEPPRLA 251

Query: 438 VEKLLE 421
           ++ LLE
Sbjct: 252 LQSLLE 257

>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)|
           (EF-1AO) (42S p48)
          Length = 461

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = -2

Query: 465 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 310
           VTF    +T E K +E  H  +QE         NVK + + D      A    N   M+ 
Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337

Query: 309 GSFYG*KILHTHPPSFAA 256
           GSF    I+  HP   +A
Sbjct: 338 GSFTAQVIILNHPGQISA 355

>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (Eif3p42) (eIF3g)
          Length = 320

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 26/99 (26%), Positives = 40/99 (40%)
 Frame = +2

Query: 371 SCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVTGPSREFTSLLPMFSIPVEPTHLRTSFVV 550
           SC R+     WT+ CPY  +   +    ++  G S      LP    PV+    +T   V
Sbjct: 156 SC-RICKGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQAAQSKTGKYV 214

Query: 551 HPSTQSTEKVNGLSWERCRRS*RQDSSLTLSVWKIPLQT 667
            PS +      G S +  RR+   D + T+ V  +   T
Sbjct: 215 PPSLRDGASRRGESMQPNRRA---DDNATIRVTNLSEDT 250

>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
          Length = 1346

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 362 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 466
           + +SC+R TL    T  CP  SS +TVI+ C  ++
Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453

>TAL_AQUAE (O66520) Probable transaldolase (EC 2.2.1.2)|
          Length = 217

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -2

Query: 555 GCTTNEVRKWVGSTG--IENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNV 385
           G TTN     +  TG   + + K ++   DGPV+ E   +  E ++  G ML +  +NV
Sbjct: 24  GVTTNPTL--ISKTGRPFKEVVKEILELVDGPVSLETVSLDAEGMIREGRMLAELGENV 80

>ESR2_SPAAU (Q9W6M2) Estrogen receptor beta (ER-beta)|
          Length = 559

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = +1

Query: 475 PRVHQPLANVL------DSGRADPLAHLIRRTPEHAEHRKSQWIVLGKVSTILTT 621
           P VHQ L+  L        G   PL HL  R P+H +  +S W+ L  +  +LT+
Sbjct: 76  PSVHQTLSPSLFWPSHGHVGTTLPLHHLQAR-PQHGQAVQSPWVELSPLDNVLTS 129


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,898,478
Number of Sequences: 219361
Number of extensions: 2093407
Number of successful extensions: 6171
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 5914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6129
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)