>MCM3_YEAST (P24279) DNA replication licensing factor MCM3 (Minichromosome|
           maintenance protein 3)
          Length = 971

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 225 AARRRTLSTSPTGRSRAKEQRSGSGSAFRRGPARELASGAACRPSTA 365
           A  +R+   SP  R R ++  S SGS  +  P R  AS     PS+A
Sbjct: 756 ALSKRSPQKSPKKRQRVRQPASNSGSPIKSTPRRSTASSVNATPSSA 802

>PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane intrinsic|
           protein 1.2) (OsPIP1.2)
          Length = 282

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 20/53 (37%), Positives = 31/53 (58%)
 Frame = +3

Query: 210 RHVTPAARRRTLSTSPTGRSRAKEQRSGSGSAFRRGPARELASGAACRPSTAS 368
           R  + +ARRR   T+ T RSR + + S  GS+  RGP+    S ++  PS++S
Sbjct: 10  RRGSRSARRRRAPTTRTTRSRRRRRCSSQGSS-SRGPSTAQGSPSSWPPSSSS 61

>H1L_MYTTR (Q05831) Sperm-specific protein PHI-2B (PL-II*) (Sperm-specific|
           linker histone H1-like protein) [Contains:
           Sperm-specific protein PHI-3 (Protamine-like protein
           PHI-3) (PL-IV)]
          Length = 202

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = +3

Query: 147 VSNPLTTSQVISCXLVLMNKQRHVTPAARRRTLSTSPTGRSRAKEQRSGSGSAFRRGPAR 326
           V  P T S +++    + N++     A R+  L+ +    +      S  GSA +   A+
Sbjct: 39  VKKPSTLSMIVAAITAMKNRKGSSVQAIRKYILANNKGINT------SHLGSAMKLAFAK 92

Query: 327 ELASGAACRPSTASGRCG 380
            L SG   RP T++G  G
Sbjct: 93  GLKSGVLVRPKTSAGASG 110



 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 222 PAARRRTLSTSPTGRSRAKEQRSGSGSAFRRGPARELASGAACRPSTAS 368
           P+  R++ S S   RSR+K  +       R+ P +  A+G   +PST S
Sbjct: 1   PSPSRKSRSRS---RSRSKSPKRSPAKKARKTPKKPRAAGGVKKPSTLS 46

>SON_MOUSE (Q9QX47) SON protein|
          Length = 2404

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 201  NKQRHVTPAARRRTLSTSPTGRSRAKEQRSGSGSAFRRGPAR 326
            +++R      RRR+ S SP+ RSR   +RS + S   R P+R
Sbjct: 1920 SRRRRSISVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSR 1961



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 216  VTPAARRRT---LSTSPTGRSRAKEQRSGSGSAFRRGPARELASGAACR 353
            ++P+ R RT    S +P+ RSR   +RS + S   R P+R   S +A R
Sbjct: 1936 ISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSAVR 1984

>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding|
            protein) (NRE-binding protein) (DBP-5) (Bax antagonist
            selected in saccharomyces 1) (BASS1)
          Length = 2426

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 201  NKQRHVTPAARRRTLSTSPTGRSRAKEQRSGSGSAFRRGPAR 326
            +++R      RRR+ S SP+ RSR   +RS + S   R P+R
Sbjct: 1935 SRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSR 1976



 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 207  QRHVTPAARRRT---LSTSPTGRSRAKEQRSGSGSAFRRGPARELASGAACR 353
            +R  TP+ R RT    S +P+ RSR   +RS + S   R P+R   S +  R
Sbjct: 1955 RRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVR 2006

>PCGF4_HUMAN (P35226) Polycomb group RING finger protein 4 (Polycomb complex|
           protein BMI-1) (RING finger protein 51)
          Length = 326

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 216 VTPAARRRTLSTSPTGRSRAKEQRSGSGSAFRRGPARELASGAACRPSTAS 368
           V P  +R  +S    G + A E  S SGS     PA  + S ++C PS ++
Sbjct: 227 VRPTCKRMKISHQRDGLTNAGELESDSGSDKANSPAGGIPSTSSCLPSPST 277

>PCGF4_FELCA (Q9TST0) Polycomb group RING finger protein 4 (Polycomb complex|
           protein BMI-1)
          Length = 326

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 216 VTPAARRRTLSTSPTGRSRAKEQRSGSGSAFRRGPARELASGAACRPSTAS 368
           V P  +R  +S    G + A E  S SGS     PA  + S ++C PS ++
Sbjct: 227 VRPTCKRMKISHQRDGLTNAGELESDSGSDKANSPAGGIPSTSSCLPSPST 277

>YQ56_CAEEL (Q09252) Hypothetical protein C16C10.6|
          Length = 392

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +3

Query: 222 PAARRRTLSTSPTGRSRAKEQRSGSGSAFRRGP 320
           P ARRRT S SPT R   + + SGS    RR P
Sbjct: 298 PRARRRTSSPSPTSRKSIESRESGS----RRSP 326

>APTX_HUMAN (Q7Z2E3) Aprataxin (Forkhead-associated domain histidine triad-like|
           protein) (FHA-HIT)
          Length = 356

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 252 SPTGRSRAKEQRSGSGSAFRRGPARELASGAACRPSTASGRC 377
           +P   +  K +RSG+  +  R  A+E  +G    P + SG+C
Sbjct: 120 NPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQC 161

>H1L_MYTCA (P22974) Sperm-specific protein PHI-2B (PL-II*) (Sperm-specific|
           linker histone H1-like protein)
          Length = 148

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 222 PAARRRTLSTSPTGRSRAKEQRSGSGSAFRRGPARELASGAACRPSTAS 368
           P+  RR+ S S   RSR+K  +       R+ P +  A+G A +PST S
Sbjct: 1   PSPSRRSRSRS---RSRSKSPKRSPAKKARKTPKKRRATGGAKKPSTLS 46



 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +3

Query: 156 PLTTSQVISCXLVLMNKQRHVTPAARRRTLSTSPTGRSRAKEQRSGSGSAFRRGPARELA 335
           P T S +++    + N++     A R+  L+ +    +      S  GSA +   A+ L 
Sbjct: 42  PSTLSMIVAAIQAMKNRKGSSVQAIRKYILANNKGINT------SRLGSAMKLAFAKGLK 95

Query: 336 SGAACRPSTASGRCG 380
           SG   RP T++G  G
Sbjct: 96  SGVLVRPKTSAGASG 110

>H1L1_OSTED (Q86QH9) Sperm-specific H1/protamine-like protein type 1 precursor|
           [Contains: Sperm-specific protein OE1 (Sperm-specific
           linker histone H1-like protein OE1); Sperm-specific
           protein OE3 (Protamine-like OS3)]
          Length = 202

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +3

Query: 156 PLTTSQVISCXLVLMNKQRHVTPAARRRTLSTSPTGRSRAKEQRSGSGSAFRRGPARELA 335
           P T S +++    + N++     A R+  L+ +    +      S  GSA +   A+ L 
Sbjct: 43  PTTLSMIVAAITAMKNRKGSSVQAIRKYILANNKGINT------SHLGSAMKLAFAKGLK 96

Query: 336 SGAACRPSTASGRCG 380
           SG   RP T++G  G
Sbjct: 97  SGVLVRPKTSAGASG 111



 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 222 PAARRRTLSTSPTGRSRAKEQRSGSGSAFRRGPARELASGAACRPSTAS 368
           P+  R++ S S   RSR+K  +       R+ P +  A+G A +P+T S
Sbjct: 2   PSPSRKSRSRS---RSRSKSPKRSPAKKARKTPKKPRAAGGAKKPTTLS 47

>VE2_HPV22 (P50768) Regulatory protein E2|
          Length = 436

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/44 (47%), Positives = 25/44 (56%)
 Frame = +3

Query: 204 KQRHVTPAARRRTLSTSPTGRSRAKEQRSGSGSAFRRGPARELA 335
           +QR  TP  RR+T S     RSR+ EQR   G A RR  +RE A
Sbjct: 253 RQRQETPTRRRKTRS-----RSRSTEQR--GGRATRRSLSRESA 289

>PCGF4_MOUSE (P25916) Polycomb group RING finger protein 4 (Polycomb complex|
           protein BMI-1)
          Length = 324

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 216 VTPAARRRTLSTSPTGRSRAKEQRSGSGSAFRRGPARELASGAACRPSTAS 368
           V P  +R  +S    G + A E  S SGS     PA  + S ++C PS ++
Sbjct: 225 VRPTCKRMKMSHQRDGLTNAGELESDSGSDKANSPAGGVPSTSSCLPSPST 275

>UL76_HCMVA (P16725) Protein UL76|
          Length = 325

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
 Frame = +3

Query: 213 HVTPAARRRTLSTSPTGRSRAKEQRSGS------GSAFRRGPARELASGAACRPSTASGR 374
           H+  A RRR L T+   R+     R+ +      G   RRG AR  A G   +  +ASG 
Sbjct: 199 HLLAATRRRLLRTARGKRAALPRARASAVAGGRGGDNARRGLARGRAHGPGAQTVSASGA 258

Query: 375 CGFG 386
            G G
Sbjct: 259 QGSG 262

>CI066_HUMAN (Q5T8R8) Protein C9orf66|
          Length = 295

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +3

Query: 231 RRRTLSTSPTGRSRAKEQRSGSGSAFRRGPARELAS 338
           R R  + S  GR R    R+GSG    RGP+ ELAS
Sbjct: 195 RGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELAS 230

>E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78)|
          Length = 866

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 222 PAARRRTLSTSPTGRSRAKEQRSGSGSAFRRGPARELASGAACRPSTA 365
           PA+   T S+SP+  +      SG  SA   G +R   S +A   S+A
Sbjct: 233 PASNHNTSSSSPSSSAAHSSPDSGCSSASSSGSSRSCGSSSASSSSSA 280

>NRTN_MOUSE (P97463) Neurturin precursor|
          Length = 195

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 370 PDAVDGRHAAPLASSRAGPRRNAEP 296
           PDAV+ R  +P A+   GPRR A P
Sbjct: 65  PDAVELRELSPWAARIPGPRRRAGP 89

>VE2_HPV38 (Q80910) Regulatory protein E2|
          Length = 441

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 201 NKQRHVTPAARRRTLSTSPTGRSRAKEQRSGSGSAFRRGPARELASGAACRPSTASG 371
           N+    T  +  R  S SPT     + +R G G + RRGP     S +  R S+A G
Sbjct: 275 NRGGRDTRRSSSRGSSVSPT-----RGRRRGGGDSRRRGPVTRSRSRSLSRASSAGG 326

>CHST3_TORCA (O93403) Carbohydrate sulfotransferase 3 (EC 2.8.2.17) (Chondroitin|
           6-O-sulfotransferase 1) (C6ST-1) (Nervous system
           involved sulfotransferase)
          Length = 441

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 294 SGSAFRRGPARELASGAACRPSTASGRCGFGC 389
           +G  FRRG ++ L  G  C P    G   F C
Sbjct: 181 TGILFRRGSSKSLCEGEVCTPPKKGGTEKFPC 212

>TRPC5_RABIT (O62852) Short transient receptor potential channel 5 (TrpC5)|
           (Rtrp5) (Capacitative calcium entry channel 2) (CCE2)
          Length = 974

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 234 RRTLSTSPTGRSRAKEQRSGSGSAFRRGPARELASGAACRPSTASG 371
           RR+LSTS T  S+  +   GSG A  R  ++ ++    C+     G
Sbjct: 768 RRSLSTSSTELSQRDDTNDGSGGA--RAKSKSVSFNLGCKKKACHG 811

>AROB_XYLFT (Q87DU9) 3-dehydroquinate synthase (EC 4.2.3.4)|
          Length = 370

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
 Frame = -1

Query: 397 GAQHPNPHLPDAVDGRHAAPLASSRAGPRRNAE-------PLPDRCSFARLRPVGEVDKV 239
           G  H  P L   + GRHA  L+ S   PR  A+         PD        P GE  K 
Sbjct: 25  GLLHDPPRLAATIRGRHALILSDSEVAPRYAAQLHETLLRARPDLHLNVFTLPAGETSKS 84

Query: 238 L 236
           L
Sbjct: 85  L 85

>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase) (Isozyme 1B)
          Length = 348

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +3

Query: 204 KQRHVTPAARRRTLSTSPTGRSRAKEQRSGSGSAFRRGPARELASGAACRPST 362
           ++RH  P  RRRT ST+ T  S        +GS +     R  ++     P T
Sbjct: 148 RRRHRKPGHRRRT-STTSTSASSGSSSAGSTGSRWTSASTRGASTSPRATPPT 199

>NRTN_HUMAN (Q99748) Neurturin precursor|
          Length = 197

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 370 PDAVDGRHAAPLASSRAGPRRNAEPLPDRCSFARL--RPVG 254
           PDA++ R   P A    GPRR A P   R   ARL  RP G
Sbjct: 65  PDAMELRELTPWAGRPPGPRRRAGPRRRRAR-ARLGARPCG 104

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +3

Query: 234  RRTLSTSPTGRSRAKEQRSGSGSAFRR--GPARELASGAACR-PSTASGR 374
            RR     P  R R + +R G G A RR  GP   LA  +  R PS    R
Sbjct: 2280 RRARRPRPRQRRRPRRRRGGGGRALRRAPGPREPLAQDSPGRGPSVCLAR 2329

>VL1_HPV29 (P50792) Major capsid protein L1|
          Length = 503

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 204 KQRHVTPAARRRTLSTSPTGRSRAKEQR 287
           ++R V P+ +RRT +T+PT   R + ++
Sbjct: 476 RRRSVVPSRKRRTTTTAPTPAKRKRSKK 503

>HSP1_CHICK (P15340) Sperm histone (Protamine) (Galline)|
          Length = 61

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/47 (42%), Positives = 24/47 (51%)
 Frame = +3

Query: 231 RRRTLSTSPTGRSRAKEQRSGSGSAFRRGPARELASGAACRPSTASG 371
           R RT S SP  RSR + +RSG     RR P R    G+A R   + G
Sbjct: 5   RSRTRSRSP--RSRRRRRRSGR----RRSPRRRRRYGSARRSRRSVG 45

>COBH_PSEDE (P21638) Precorrin-8X methylmutase (EC 5.4.1.2) (Precorrin|
           isomerase) (HBA synthase)
          Length = 210

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 297 RSPTVAPSRGSGRSVRSTKSFSERLA*RDVAYSSEP 190
           R+P +A   G+ RS  + K +SERLA   VA  + P
Sbjct: 104 RTPALAAEIGNTRSAAALKLWSERLAGSVVAIGNAP 139


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,426,237
Number of Sequences: 219361
Number of extensions: 708883
Number of successful extensions: 2804
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2800
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)