ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal3i04 |
|---|---|
| Clone Library Name | barley_pub |
>RPOD_CHLPN (Q9Z7F0) RNA polymerase sigma factor rpoD (Sigma-70) (Sigma-A)| (Sigma-66) Length = 572 Score = 91.3 bits (225), Expect = 2e-18 Identities = 42/137 (30%), Positives = 83/137 (60%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A G++ +++ ++ + P S+Q +V +F + ED ++SP Sbjct: 420 PTPEELAEELGLTPDRVREIYKIAQHPISLQAEVGEGSESSFGDFLEDTAVESPAEATGY 479 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 M++ +++E L L+ RE+ ++ HRFG+ DG+PKTL +G + +++ERIRQ++ +AL K Sbjct: 480 SMLKDKMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRK 539 Query: 243 LKRSVSTQGFDVYLDLL 193 ++ + ++ +LDLL Sbjct: 540 MRHPIRSKQLRAFLDLL 556
>RPOD_CHLMU (P56835) RNA polymerase sigma factor rpoD (Sigma-70) (Sigma-A)| (Sigma-66) Length = 571 Score = 88.6 bits (218), Expect = 1e-17 Identities = 41/137 (29%), Positives = 81/137 (59%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + + G + +++ ++ + P S+Q +V + +F + ED ++SP Sbjct: 420 PTPEELGEELGFTPDRVREIYKIAQHPISLQAEVGDSGESSFGDFLEDTAVESPAEATGY 479 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 M++ +++E L L+ RE+ ++ HRFG+ DG PKTL +G + +++ERIRQ++ +AL K Sbjct: 480 SMLKDKMKEVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRK 539 Query: 243 LKRSVSTQGFDVYLDLL 193 ++ + ++ +LDLL Sbjct: 540 MRHPIRSKQLRAFLDLL 556
>RPOD_CHLTR (P18333) RNA polymerase sigma factor rpoD (Sigma-70) (Sigma-A)| (Sigma-66) Length = 571 Score = 88.2 bits (217), Expect = 2e-17 Identities = 41/137 (29%), Positives = 80/137 (58%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + + G + +++ ++ + P S+Q +V +F + ED ++SP Sbjct: 420 PTPEELGEELGFTPDRVREIYKIAQHPISLQAEVGDGGESSFGDFLEDTAVESPAEATGY 479 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 M++ +++E L L+ RE+ ++ HRFG+ DG PKTL +G + +++ERIRQ++ +AL K Sbjct: 480 SMLKDKMKEVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRK 539 Query: 243 LKRSVSTQGFDVYLDLL 193 ++ + ++ +LDLL Sbjct: 540 MRHPIRSKQLRAFLDLL 556
>RPOD_BORBU (P52323) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 631 Score = 87.0 bits (214), Expect = 4e-17 Identities = 43/135 (31%), Positives = 80/135 (59%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT++ ++ R G ++K+ +K+ +R+P S++ + + + ED I +P Sbjct: 494 PTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGEEEDSVLSDFIEDKAIKNPANHTSF 553 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++ Q+R LG L RE+E+V+ RFG+ DG TL +G + +++ERIRQ++++AL + Sbjct: 554 VVLQDQIRAILGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRERIRQIESKALRR 613 Query: 243 LKRSVSTQGFDVYLD 199 LK TQ YL+ Sbjct: 614 LKNPKKTQKLKDYLE 628
>HRDB_STRGR (P77951) RNA polymerase principal sigma factor hrdB| Length = 514 Score = 84.7 bits (208), Expect = 2e-16 Identities = 44/135 (32%), Positives = 78/135 (57%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A+ ++ EK+ +++ R+P S+ + + F ++ ED P V Sbjct: 380 PTPEELAKELDMTPEKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSF 439 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++Q+ L LS RE +V RFG+ DG+PKTL IG +YG+++ERIRQ++++ + K Sbjct: 440 TLLQEQLHSVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSK 499 Query: 243 LKRSVSTQGFDVYLD 199 L+ +Q YLD Sbjct: 500 LRHPSRSQVLRDYLD 514
>HRDB_STRCO (P18183) RNA polymerase principal sigma factor hrdB| Length = 511 Score = 84.7 bits (208), Expect = 2e-16 Identities = 44/135 (32%), Positives = 78/135 (57%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A+ ++ EK+ +++ R+P S+ + + F ++ ED P V Sbjct: 377 PTPEELAKELDMTPEKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSF 436 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++Q+ L LS RE +V RFG+ DG+PKTL IG +YG+++ERIRQ++++ + K Sbjct: 437 TLLQEQLHSVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSK 496 Query: 243 LKRSVSTQGFDVYLD 199 L+ +Q YLD Sbjct: 497 LRHPSRSQVLRDYLD 511
>HRDA_STRCO (P18182) RNA polymerase principal sigma factor hrdA| Length = 396 Score = 84.0 bits (206), Expect = 3e-16 Identities = 43/135 (31%), Positives = 76/135 (56%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT Q VA ++ E++ ++ ++P S+ V D V ++ ED + SP Sbjct: 262 PTPQEVAAHLDLAPERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAF 321 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +++RQ + L L RE+++V+ R+G+ DG P+TL IG ++G+++ERIRQ++++ L K Sbjct: 322 LLLRQHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSK 381 Query: 243 LKRSVSTQGFDVYLD 199 L+ YLD Sbjct: 382 LRDHAYADQLRGYLD 396
>RPOD_LEPIN (P59117) RNA polymerase sigma factor rpoD| Length = 585 Score = 81.6 bits (200), Expect = 2e-15 Identities = 39/135 (28%), Positives = 77/135 (57%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P N+ +A R G ++K+ +K R+P S++ V S + + D +++P Sbjct: 450 PNNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAAS 509 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++ +Q+R+ L L RE++++ RFG+ DG P+TL +G + +++ERIRQ++ +AL + Sbjct: 510 SILAEQIRQVLHTLPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRR 569 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ Y+D Sbjct: 570 LRHPSRSKKLKDYID 584
>RPOD_LEPIC (P61540) RNA polymerase sigma factor rpoD| Length = 585 Score = 81.6 bits (200), Expect = 2e-15 Identities = 39/135 (28%), Positives = 77/135 (57%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P N+ +A R G ++K+ +K R+P S++ V S + + D +++P Sbjct: 450 PNNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAAS 509 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++ +Q+R+ L L RE++++ RFG+ DG P+TL +G + +++ERIRQ++ +AL + Sbjct: 510 SILAEQIRQVLHTLPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRR 569 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ Y+D Sbjct: 570 LRHPSRSKKLKDYID 584
>RPOD_TREPA (O83506) RNA polymerase sigma factor rpoD (Sigma-A) (Major| vegetative sigma factor) Length = 611 Score = 80.1 bits (196), Expect = 5e-15 Identities = 35/135 (25%), Positives = 82/135 (60%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P+++ +A++ ++EK+ ++K+ R+P S++ + + + + D ++++P V +R Sbjct: 476 PSDEEIAQQLCWTVEKVKQVKSVAREPISLETPIGEEEDSSLGDFVPDADVENPSRVTER 535 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++++VR L L RE E++ RFG+ +TL +G + +++ERIRQ++ +AL + Sbjct: 536 VLLKEEVRSILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKR 595 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ +LD Sbjct: 596 LRHPRHSRRLKDFLD 610
>RPOD_THEMA (P77994) RNA polymerase sigma factor rpoD (Sigma-A)| Length = 399 Score = 80.1 bits (196), Expect = 5e-15 Identities = 39/141 (27%), Positives = 81/141 (57%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P+ + +A+ G EK+ ++ ++ S++ + ++ + ++ D +I SP R Sbjct: 258 PSIEELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMR 317 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++MR+++ + L LS RE ++ R+G+ DG+PKTL +G + +++ERIRQ++ +AL K Sbjct: 318 MLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRK 377 Query: 243 LKRSVSTQGFDVYLDLLTSND 181 L+ ++ L L+ N+ Sbjct: 378 LRHPSRSKYLKSLLSLMDENE 398
>RPOD_MYCTU (P0A602) RNA polymerase sigma factor rpoD (Sigma-A)| Length = 528 Score = 79.7 bits (195), Expect = 6e-15 Identities = 42/135 (31%), Positives = 74/135 (54%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A+ I+ EK+ +++ R+P S+ + + ED V Sbjct: 394 PTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSF 453 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +++ Q++ L LS RE +V RFG+ DG+P+TL IG +YG+++ERIRQ++++ + K Sbjct: 454 TLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSK 513 Query: 243 LKRSVSTQGFDVYLD 199 L+ +Q YLD Sbjct: 514 LRHPSRSQVLRDYLD 528
>RPOD_MYCBO (P0A603) RNA polymerase sigma factor rpoD (Sigma-A)| Length = 528 Score = 79.7 bits (195), Expect = 6e-15 Identities = 42/135 (31%), Positives = 74/135 (54%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A+ I+ EK+ +++ R+P S+ + + ED V Sbjct: 394 PTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSF 453 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +++ Q++ L LS RE +V RFG+ DG+P+TL IG +YG+++ERIRQ++++ + K Sbjct: 454 TLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSK 513 Query: 243 LKRSVSTQGFDVYLD 199 L+ +Q YLD Sbjct: 514 LRHPSRSQVLRDYLD 528
>RPOD_STRR6 (P0A4J0) RNA polymerase sigma factor rpoD| Length = 369 Score = 78.6 bits (192), Expect = 1e-14 Identities = 38/123 (30%), Positives = 76/123 (61%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A R ++ +K+ ++ ++P S++ + D + ED I++P R Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 I++R+Q+ E L L+ RE+ ++ RFG+ DG+ +TL +G ++ +++ERIRQ++ +AL K Sbjct: 294 IVLREQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 243 LKR 235 L++ Sbjct: 354 LRQ 356
>RPOD_STRPN (P0A4I9) RNA polymerase sigma factor rpoD| Length = 369 Score = 78.6 bits (192), Expect = 1e-14 Identities = 38/123 (30%), Positives = 76/123 (61%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A R ++ +K+ ++ ++P S++ + D + ED I++P R Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 I++R+Q+ E L L+ RE+ ++ RFG+ DG+ +TL +G ++ +++ERIRQ++ +AL K Sbjct: 294 IVLREQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 243 LKR 235 L++ Sbjct: 354 LRQ 356
>RPOD_STRMU (O33662) RNA polymerase sigma factor rpoD (Sigma-42)| Length = 371 Score = 77.0 bits (188), Expect = 4e-14 Identities = 37/122 (30%), Positives = 75/122 (61%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A R ++ +K+ ++ ++P S++ + D + ED I++P R Sbjct: 236 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 295 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +++R+Q+ E L L+ RE+ ++ RFG+ DG+ +TL +G ++ +++ERIRQ++ +AL K Sbjct: 296 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFDVTRERIRQIEAKALRK 355 Query: 243 LK 238 L+ Sbjct: 356 LR 357
>RPSB_CORDI (P33118) RNA polymerase sigma factor sigB| Length = 329 Score = 76.6 bits (187), Expect = 5e-14 Identities = 38/132 (28%), Positives = 67/132 (50%) Frame = -3 Query: 600 TNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI 421 TN+ +A +GI K+ L ++R P S+ V +++ + ED + V Sbjct: 196 TNEELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVAS 255 Query: 420 MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 241 + +R L L RE++++ R+G+ DG P+TL IG +GLS+ER+RQ++ + KL Sbjct: 256 LRHSDIRTVLDTLEQREQDVIRLRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMSKL 315 Query: 240 KRSVSTQGFDVY 205 + + Y Sbjct: 316 RDGARAEKLRAY 327
>RPOD_STRAU (P27785) RNA polymerase sigma factor rpoD| Length = 317 Score = 75.1 bits (183), Expect = 1e-13 Identities = 40/135 (29%), Positives = 74/135 (54%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + VA ++ E++ ++ ++P S+ V D V ++ ED + SP Sbjct: 183 PTAEEVAVHLELTPERVLEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAF 242 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 + + + L L RE+++V+ R+G+ DG P+TL IG ++G+++ERIRQ++++ L+K Sbjct: 243 FLRCEHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNK 302 Query: 243 LKRSVSTQGFDVYLD 199 L+ YLD Sbjct: 303 LRDHAFADQLRGYLD 317
>RPSD2_BACSP (P52328) RNA polymerase sigma factor rpoD (Sigma-A)| Length = 377 Score = 74.3 bits (181), Expect = 3e-13 Identities = 36/135 (26%), Positives = 76/135 (56%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A +S+EK+ ++ ++P S++ + D + ED +P Sbjct: 243 PTPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALTPADAAAY 302 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++Q+ + L L+ RE+ ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL K Sbjct: 303 ELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 362 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ +L+ Sbjct: 363 LRHPSRSKRLKDFLE 377
>RPOD_XYLFT (Q87DT7) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 618 Score = 73.6 bits (179), Expect = 4e-13 Identities = 38/135 (28%), Positives = 74/135 (54%) Frame = -3 Query: 600 TNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI 421 T + +A+ + +K+ K+ ++P SM+ + ++ + EDPN++SP + Sbjct: 483 TPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDPNVESPVDTTTNV 542 Query: 420 MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 241 + + VRE L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL KL Sbjct: 543 NLSETVREVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 602 Query: 240 KRSVSTQGFDVYLDL 196 + ++ +LD+ Sbjct: 603 RHPSRSEQLRSFLDI 617
>RPOD_XYLFA (Q9PDM9) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 618 Score = 73.6 bits (179), Expect = 4e-13 Identities = 38/135 (28%), Positives = 74/135 (54%) Frame = -3 Query: 600 TNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI 421 T + +A+ + +K+ K+ ++P SM+ + ++ + EDPN++SP + Sbjct: 483 TPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDPNVESPVDTTTNV 542 Query: 420 MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 241 + + VRE L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL KL Sbjct: 543 NLSETVREVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 602 Query: 240 KRSVSTQGFDVYLDL 196 + ++ +LD+ Sbjct: 603 RHPSRSEQLRSFLDI 617
>RPOD_ANASP (P26683) RNA polymerase sigma factor rpoD (Sigma-A)| Length = 390 Score = 73.2 bits (178), Expect = 6e-13 Identities = 37/122 (30%), Positives = 72/122 (59%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A R ++IEKL + + P S++ + + + E ++P+ V + Sbjct: 257 PTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSK 315 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++R+ + + L LS RE++++ R+G+ DG KTL IG ++ +++ERIRQ++ +AL K Sbjct: 316 NLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRK 375 Query: 243 LK 238 L+ Sbjct: 376 LR 377
>HRDD_STRGR (Q59914) RNA polymerase principal sigma factor hrdD| Length = 332 Score = 72.8 bits (177), Expect = 7e-13 Identities = 40/131 (30%), Positives = 68/131 (51%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P +A + E++ + R P S+ V F ++ ED + SP+ V Sbjct: 199 PEPAEIAAELSSTPERVTDVLDWARDPVSLNMSVDDEGETQFGDLLEDTSAVSPEQSVLT 258 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++ +++ + +G L R I++ R+GI DG +TL +G +GL++ERIRQ++ AL + Sbjct: 259 LLRSEELDDLIGQLDDRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLE 318 Query: 243 LKRSVSTQGFD 211 LKR GFD Sbjct: 319 LKRMAHDTGFD 329
>RPOD_BACSU (P06224) RNA polymerase sigma factor rpoD (Sigma-A) (Sigma-43)| Length = 371 Score = 72.4 bits (176), Expect = 1e-12 Identities = 36/135 (26%), Positives = 75/135 (55%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A ++ EK+ ++ ++P S++ + D + ED SP Sbjct: 237 PTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAY 296 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++Q+ + L L+ RE+ ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL K Sbjct: 297 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 356 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ +L+ Sbjct: 357 LRHPSRSKRLKDFLE 371
>RPOD_SYNY3 (P74565) RNA polymerase sigma factor rpoD| Length = 425 Score = 71.6 bits (174), Expect = 2e-12 Identities = 36/122 (29%), Positives = 71/122 (58%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A + ++IEKL + + P S++ + + + E ++P+ V + Sbjct: 292 PTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-ETPEDEVSK 350 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++R+ + L LS RE++++ R+G+ DG KTL IG ++ +++ERIRQ++ +AL K Sbjct: 351 NLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRK 410 Query: 243 LK 238 L+ Sbjct: 411 LR 412
>RPOD_SYNP7 (P38023) RNA polymerase sigma factor rpoD1| Length = 399 Score = 71.6 bits (174), Expect = 2e-12 Identities = 37/122 (30%), Positives = 71/122 (58%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A R ++IEKL + + P S++ + + + E ++P+ V + Sbjct: 266 PTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-ETPEDEVAK 324 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++R+ + L LS RE++++ R+G+ DG KTL IG ++ +++ERIRQ++ +AL K Sbjct: 325 NLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRK 384 Query: 243 LK 238 L+ Sbjct: 385 LR 386
>RPOD_LACLA (Q04506) RNA polymerase sigma factor rpoD (Sigma-42)| Length = 386 Score = 71.6 bits (174), Expect = 2e-12 Identities = 34/122 (27%), Positives = 72/122 (59%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P+ + + + ++ +K+ ++ ++P S++ + D + ED I+SP +R Sbjct: 253 PSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYTNR 312 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 I++R+Q+ E + L+ RE+ ++ RFG+ DG TL +G + +++ERIRQ++ +A+ K Sbjct: 313 ILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEAKAIKK 372 Query: 243 LK 238 L+ Sbjct: 373 LR 374
>RPOD_LACLC (P58290) RNA polymerase sigma factor rpoD (Sigma-42) (Fragment)| Length = 364 Score = 71.6 bits (174), Expect = 2e-12 Identities = 34/122 (27%), Positives = 72/122 (59%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P+ + + + ++ +K+ ++ ++P S++ + D + ED I+SP +R Sbjct: 231 PSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYTNR 290 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 I++R+Q+ E + L+ RE+ ++ RFG+ DG TL +G + +++ERIRQ++ +A+ K Sbjct: 291 ILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEAKAIKK 350 Query: 243 LK 238 L+ Sbjct: 351 LR 352
>RPOD_ENTFA (P52329) RNA polymerase sigma factor rpoD (Sigma-42)| Length = 368 Score = 71.2 bits (173), Expect = 2e-12 Identities = 35/135 (25%), Positives = 74/135 (54%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + + + EK+ ++ ++P S++ + D + ED + SP Sbjct: 234 PTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAY 293 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++Q+ + L L+ RE+ ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL K Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ +L+ Sbjct: 354 LRHPSRSKQLKDFLE 368
>RPOD_HELPJ (Q9ZMY3) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 681 Score = 71.2 bits (173), Expect = 2e-12 Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 4/126 (3%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P + VA G+S++K+ + T++P S++ V ++D F + ED NI S +D Sbjct: 545 PDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSS---IDH 601 Query: 423 IM---MRQQVREFLGILSTREKEIVEHRFGIYDGE-PKTLHVIGDMYGLSKERIRQLQNR 256 IM ++ Q+ L L+ REK ++ RFG+ D E +TL IG +++ER+RQ+++ Sbjct: 602 IMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESS 661 Query: 255 ALDKLK 238 A+ KL+ Sbjct: 662 AIKKLR 667
>RPOD_BACHD (O66381) RNA polymerase sigma factor rpoD (Sigma-A) (Sigma-43)| Length = 372 Score = 71.2 bits (173), Expect = 2e-12 Identities = 35/135 (25%), Positives = 76/135 (56%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P+ + VA ++ EK+ ++ ++P S++ + D + ED + +P Sbjct: 238 PSPEEVAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAAAY 297 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++Q+ + L L+ RE+ ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL K Sbjct: 298 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 357 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ +L+ Sbjct: 358 LRHPSRSKRLKDFLE 372
>RPOD_HELPY (P55993) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 671 Score = 71.2 bits (173), Expect = 2e-12 Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 4/126 (3%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P + VA G+S++K+ + T++P S++ V ++D F + ED NI S +D Sbjct: 535 PDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSS---IDH 591 Query: 423 IM---MRQQVREFLGILSTREKEIVEHRFGIYDGE-PKTLHVIGDMYGLSKERIRQLQNR 256 IM ++ Q+ L L+ REK ++ RFG+ D E +TL IG +++ER+RQ+++ Sbjct: 592 IMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESS 651 Query: 255 ALDKLK 238 A+ KL+ Sbjct: 652 AIKKLR 657
>HRDD_STRVF (Q60012) RNA polymerase principal sigma factor hrdD| Length = 332 Score = 71.2 bits (173), Expect = 2e-12 Identities = 41/131 (31%), Positives = 69/131 (52%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P VA G + E++ + R P S+ V F ++ ED + SP+ V Sbjct: 199 PEPAEVAAELGSTPERVIDVLDWARDPVSLNMAVDDAGETQFGDLLEDTSAVSPEQSVLT 258 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++ +++ + +G L R I++ R+GI DG +TL +G +GL++ERIRQ++ AL + Sbjct: 259 LLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLE 318 Query: 243 LKRSVSTQGFD 211 LK+ GFD Sbjct: 319 LKKLARDTGFD 329
>RPOD_MICAE (P52322) RNA polymerase sigma factor rpoD1| Length = 416 Score = 71.2 bits (173), Expect = 2e-12 Identities = 36/122 (29%), Positives = 71/122 (58%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A + ++IEKL + + P S++ + + + E ++P+ V + Sbjct: 283 PTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-ETPEDEVSK 341 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++R+ + L LS RE++++ R+G+ DG KTL IG ++ +++ERIRQ++ +AL K Sbjct: 342 NLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRK 401 Query: 243 LK 238 L+ Sbjct: 402 LR 403
>HRDD_STRCO (P18249) RNA polymerase principal sigma factor hrdD| Length = 332 Score = 70.9 bits (172), Expect = 3e-12 Identities = 39/131 (29%), Positives = 69/131 (52%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P +A G + E++ + R P S+ V F ++ ED + SP+ V Sbjct: 199 PEPAEIAAELGSTPERVTDVLDWARDPVSLNMSVDDEGETQFGDLLEDTSAVSPEQSVLT 258 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++ +++ + +G L R I++ R+GI DG +TL +G +GL++ERIRQ++ AL + Sbjct: 259 LLRSEELDDLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLE 318 Query: 243 LKRSVSTQGFD 211 LK+ GF+ Sbjct: 319 LKKLARDTGFE 329
>RPOD_STAAW (P0A0I9) RNA polymerase sigma factor rpoD| Length = 368 Score = 70.9 bits (172), Expect = 3e-12 Identities = 34/135 (25%), Positives = 72/135 (53%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P + + + EK+ ++ ++P S++ + D + ED SP Sbjct: 234 PAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAY 293 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++Q+ + L L+ RE+ ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL K Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ ++D Sbjct: 354 LRHPSRSKRLKDFMD 368
>RPOD_STAAU (P0A0J0) RNA polymerase sigma factor rpoD| Length = 368 Score = 70.9 bits (172), Expect = 3e-12 Identities = 34/135 (25%), Positives = 72/135 (53%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P + + + EK+ ++ ++P S++ + D + ED SP Sbjct: 234 PAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAY 293 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++Q+ + L L+ RE+ ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL K Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ ++D Sbjct: 354 LRHPSRSKRLKDFMD 368
>RPOD_STAAS (Q6G905) RNA polymerase sigma factor rpoD| Length = 368 Score = 70.9 bits (172), Expect = 3e-12 Identities = 34/135 (25%), Positives = 72/135 (53%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P + + + EK+ ++ ++P S++ + D + ED SP Sbjct: 234 PAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAY 293 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++Q+ + L L+ RE+ ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL K Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ ++D Sbjct: 354 LRHPSRSKRLKDFMD 368
>RPOD_STAAR (Q6GGD8) RNA polymerase sigma factor rpoD| Length = 368 Score = 70.9 bits (172), Expect = 3e-12 Identities = 34/135 (25%), Positives = 72/135 (53%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P + + + EK+ ++ ++P S++ + D + ED SP Sbjct: 234 PAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAY 293 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++Q+ + L L+ RE+ ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL K Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ ++D Sbjct: 354 LRHPSRSKRLKDFMD 368
>RPOD_STAAM (P0A0I8) RNA polymerase sigma factor rpoD| Length = 368 Score = 70.9 bits (172), Expect = 3e-12 Identities = 34/135 (25%), Positives = 72/135 (53%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P + + + EK+ ++ ++P S++ + D + ED SP Sbjct: 234 PAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAY 293 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++Q+ + L L+ RE+ ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL K Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ ++D Sbjct: 354 LRHPSRSKRLKDFMD 368
>RPOD_STAAC (Q5HFJ9) RNA polymerase sigma factor rpoD| Length = 368 Score = 70.9 bits (172), Expect = 3e-12 Identities = 34/135 (25%), Positives = 72/135 (53%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P + + + EK+ ++ ++P S++ + D + ED SP Sbjct: 234 PAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAY 293 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++Q+ + L L+ RE+ ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL K Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ ++D Sbjct: 354 LRHPSRSKRLKDFMD 368
>RPOD_STAAN (Q99TT5) RNA polymerase sigma factor rpoD| Length = 368 Score = 70.5 bits (171), Expect = 4e-12 Identities = 34/135 (25%), Positives = 72/135 (53%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P + + + EK+ ++ ++P S++ + D + ED SP Sbjct: 234 PAPEEIGEEMDLPAEKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAY 293 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++Q+ + L L+ RE+ ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL K Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ ++D Sbjct: 354 LRHPSRSKRLKDFMD 368
>RPOD_STAES (Q8CP24) RNA polymerase sigma factor rpoD| Length = 368 Score = 70.1 bits (170), Expect = 5e-12 Identities = 34/135 (25%), Positives = 72/135 (53%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P + + + EK+ ++ ++P S++ + D + ED SP Sbjct: 234 PAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAY 293 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++Q+ + L L+ RE+ ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL K Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ ++D Sbjct: 354 LRHPSRSKRLKDFMD 368
>RPOD_STAEQ (Q5HNY7) RNA polymerase sigma factor rpoD| Length = 368 Score = 70.1 bits (170), Expect = 5e-12 Identities = 34/135 (25%), Positives = 72/135 (53%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P + + + EK+ ++ ++P S++ + D + ED SP Sbjct: 234 PAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAY 293 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++Q+ + L L+ RE+ ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL K Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ ++D Sbjct: 354 LRHPSRSKRLKDFMD 368
>RPOD_LISMO (P52331) RNA polymerase sigma factor rpoD (Sigma-43)| Length = 374 Score = 70.1 bits (170), Expect = 5e-12 Identities = 34/135 (25%), Positives = 74/135 (54%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P+ + + + EK+ ++ ++P S++ + D + ED + SP Sbjct: 240 PSPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAY 299 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++Q+ + L L+ RE+ ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL K Sbjct: 300 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 359 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ +L+ Sbjct: 360 LRHPSRSKQLKDFLE 374
>RPOD_LISIN (Q92BQ6) RNA polymerase sigma factor rpoD (Sigma-43)| Length = 374 Score = 70.1 bits (170), Expect = 5e-12 Identities = 34/135 (25%), Positives = 74/135 (54%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P+ + + + EK+ ++ ++P S++ + D + ED + SP Sbjct: 240 PSPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAY 299 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++++Q+ + L L+ RE+ ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL K Sbjct: 300 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 359 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ +L+ Sbjct: 360 LRHPSRSKQLKDFLE 374
>RPOD_XANAC (Q8PG33) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 625 Score = 68.6 bits (166), Expect = 1e-11 Identities = 37/135 (27%), Positives = 73/135 (54%) Frame = -3 Query: 600 TNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI 421 T + +A+ + +K+ K+ ++P SM+ + ++ + ED N++SP I Sbjct: 490 TPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIDNTTNI 549 Query: 420 MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 241 + + VR+ L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL KL Sbjct: 550 NLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 609 Query: 240 KRSVSTQGFDVYLDL 196 + ++ +LD+ Sbjct: 610 RHPSRSEQLRSFLDI 624
>RPOD_XANCP (Q8P4H2) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 624 Score = 68.6 bits (166), Expect = 1e-11 Identities = 37/135 (27%), Positives = 73/135 (54%) Frame = -3 Query: 600 TNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI 421 T + +A+ + +K+ K+ ++P SM+ + ++ + ED N++SP I Sbjct: 489 TPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIDNTTNI 548 Query: 420 MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 241 + + VR+ L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL KL Sbjct: 549 NLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 608 Query: 240 KRSVSTQGFDVYLDL 196 + ++ +LD+ Sbjct: 609 RHPSRSEQLRSFLDI 623
>RPOD_MYXXA (P17531) RNA polymerase sigma factor rpoD (Sigma-80)| Length = 708 Score = 68.2 bits (165), Expect = 2e-11 Identities = 34/122 (27%), Positives = 70/122 (57%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A + + ++K+ K+ ++P S++ + + + ED ++ SP V Sbjct: 573 PTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSLVSPADAVIN 632 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 + + +Q R+ L L+ RE++++ RFGI + TL +G + +++ERIRQ++ +AL K Sbjct: 633 MNLAEQTRKVLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRK 692 Query: 243 LK 238 L+ Sbjct: 693 LR 694
>HRDC_STRCO (P18184) RNA polymerase principal sigma factor hrdC| Length = 339 Score = 67.8 bits (164), Expect = 2e-11 Identities = 36/122 (29%), Positives = 64/122 (52%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + VA +GI ++K+ L+ R S+ V ++ D + V + Sbjct: 205 PTTEEVAAESGIDVDKVVWLRRVGRDAVSLDTPVDETGDTVVGDLIPDTEVLRAPEVAEF 264 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 + ++RE +G L+ RE I+ R+G++DG P+TL + GL++ER+RQL+ +L Sbjct: 265 QALAAELREAVGTLAPRESLILSLRYGLHDGRPRTLQQVAQHVGLTRERVRQLEKESLAH 324 Query: 243 LK 238 L+ Sbjct: 325 LR 326
>RPOD_BUCBP (Q89B10) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 609 Score = 67.4 bits (163), Expect = 3e-11 Identities = 39/135 (28%), Positives = 70/135 (51%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + ++ R I +K+ K+ ++P SM+ + +D + ED NI+ P Sbjct: 474 PTPEELSERMLIPEDKIRKVLKIAKEPISMETPIGEDDDSHLGDFLEDTNIELPLDSATS 533 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +R + L L+TRE +++ RFGI TL +G + +++ERIRQ++ +AL K Sbjct: 534 ASLRSATKNVLSGLTTREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK 593 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ +LD Sbjct: 594 LRHPSRSEILRSFLD 608
>RPOD_CLOAB (P33656) RNA polymerase sigma factor rpoD (Sigma-A) (Major| vegetative sigma factor) Length = 378 Score = 66.6 bits (161), Expect = 5e-11 Identities = 33/135 (24%), Positives = 73/135 (54%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P + +A+ + ++K+ ++ ++P S++ + + + D +P Sbjct: 244 PQPEEIAKIMDMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPADAAAF 303 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 M+++Q+ + L L+ RE++++ RFG+ DG +TL +G + +++ERIRQ++ +AL K Sbjct: 304 RMLKEQLLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRK 363 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ YLD Sbjct: 364 LRHPSRSKKLKDYLD 378
>RPOD_PSEFL (P52326) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 615 Score = 66.6 bits (161), Expect = 5e-11 Identities = 37/135 (27%), Positives = 70/135 (51%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + + R + +K+ K+ ++P SM+ + ++ + ED + SP V Sbjct: 480 PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV 539 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +++ RE L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL K Sbjct: 540 ESLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK 599 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ +LD Sbjct: 600 LRHPTRSEHLRSFLD 614
>RPOD_PSEAE (P26480) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 617 Score = 66.6 bits (161), Expect = 5e-11 Identities = 36/135 (26%), Positives = 70/135 (51%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + + R + +K+ K+ ++P SM+ + ++ + ED + SP + Sbjct: 482 PTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEMATS 541 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +++ RE L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL K Sbjct: 542 ESLKESTREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK 601 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ +LD Sbjct: 602 LRHPSRSEHLRSFLD 616
>RPOD_RHIME (Q59753) RNA polymerase sigma factor rpoD (Sigma-A) (Major| vegetative sigma factor) Length = 684 Score = 65.1 bits (157), Expect = 2e-10 Identities = 37/135 (27%), Positives = 68/135 (50%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A + + +EK+ K+ ++P S++ V + + ED N P + Sbjct: 549 PTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQ 608 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +R+ L L+ RE+ ++ RFGI TL +G + +++ERIRQ++ +AL K Sbjct: 609 ANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRK 668 Query: 243 LKRSVSTQGFDVYLD 199 LK ++ +LD Sbjct: 669 LKHPSRSRKLRSFLD 683
>RPOD_AGRT5 (P33452) RNA polymerase sigma factor rpoD (Sigma-A) (Major| vegetative sigma factor) Length = 684 Score = 65.1 bits (157), Expect = 2e-10 Identities = 37/135 (27%), Positives = 68/135 (50%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A + + +EK+ K+ ++P S++ V + + ED N P + Sbjct: 549 PTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQ 608 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +R+ L L+ RE+ ++ RFGI TL +G + +++ERIRQ++ +AL K Sbjct: 609 ANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRK 668 Query: 243 LKRSVSTQGFDVYLD 199 LK ++ +LD Sbjct: 669 LKHPSRSRKLRSFLD 683
>RPOD_CAUCR (P52324) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 652 Score = 64.7 bits (156), Expect = 2e-10 Identities = 36/135 (26%), Positives = 68/135 (50%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A + + +EK+ K+ ++P S++ + + + ED N P + Sbjct: 517 PTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQ 576 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +R+ L L+ RE+ ++ RFGI TL +G + +++ERIRQ++ +AL K Sbjct: 577 SNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRK 636 Query: 243 LKRSVSTQGFDVYLD 199 LK ++ +LD Sbjct: 637 LKHPSRSRKLRSFLD 651
>RPOD_PSEPU (P52327) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 614 Score = 64.3 bits (155), Expect = 3e-10 Identities = 35/135 (25%), Positives = 69/135 (51%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + + R + +K+ K+ ++P SM+ + ++ + ED + SP V Sbjct: 479 PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIYVATV 538 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +++ R+ L L+ RE +++ RFGI TL +G + +++ERIRQ++ +A K Sbjct: 539 ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAWRK 598 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ +LD Sbjct: 599 LRHPTRSEHLRSFLD 613
>RPOD_RICCN (Q92FZ8) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 634 Score = 63.2 bits (152), Expect = 6e-10 Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 1/129 (0%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSN-DAVTFQEITEDPNIDSPDLVVD 427 PT +A R + ++K+ K+ ++P S+++ V + D + ED N +P Sbjct: 484 PTATEIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPIDAAI 543 Query: 426 RIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALD 247 + +R+ L L+ RE+ ++ RFGI TL +G + +++ERIRQ++++AL Sbjct: 544 QSNLREVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALR 603 Query: 246 KLKRSVSTQ 220 KL+ + ++ Sbjct: 604 KLQHPIRSK 612
>RPOD_RICPR (P33451) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 635 Score = 63.2 bits (152), Expect = 6e-10 Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 1/129 (0%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSN-DAVTFQEITEDPNIDSPDLVVD 427 PT +A R + ++K+ K+ ++P S+++ V + D + ED N +P Sbjct: 485 PTATEIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPIDAAI 544 Query: 426 RIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALD 247 + +R+ L L+ RE+ ++ RFGI TL +G + +++ERIRQ++++AL Sbjct: 545 QSNLREVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALR 604 Query: 246 KLKRSVSTQ 220 KL+ + ++ Sbjct: 605 KLQHPIRSK 613
>RPSC_ANASP (Q03066) RNA polymerase sigma-C factor| Length = 416 Score = 62.4 bits (150), Expect = 1e-09 Identities = 35/138 (25%), Positives = 79/138 (57%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT +++A ++ ++ ++ + + S++ +V + E+ E + +P+ ++ R Sbjct: 280 PTLEDLAIELDMTPTQVREVLLRVPRSVSLETKVGKDKDTELGELLETDGV-TPEEMLMR 338 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +++ ++ L L++RE++++ RFG+ DG P +L IG LS+ER+RQ++++AL K Sbjct: 339 ESLQRDLQHLLADLTSRERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQK 398 Query: 243 LKRSVSTQGFDVYLDLLT 190 L++ YL+ L+ Sbjct: 399 LRQPKRRNLIRDYLESLS 416
>RPOD_RHOCA (P46400) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 674 Score = 62.0 bits (149), Expect = 1e-09 Identities = 35/135 (25%), Positives = 68/135 (50%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A + + +EK+ K+ ++P S++ + + + ED N P + Sbjct: 539 PTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQ 598 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +++ L L+ RE+ ++ RFGI TL +G + +++ERIRQ++ +AL K Sbjct: 599 ENLKETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRK 658 Query: 243 LKRSVSTQGFDVYLD 199 LK ++ +LD Sbjct: 659 LKHPSRSRKLRSFLD 673
>RPOD_HAEIN (P43766) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 629 Score = 61.6 bits (148), Expect = 2e-09 Identities = 36/134 (26%), Positives = 68/134 (50%) Frame = -3 Query: 600 TNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI 421 T + +A R G+ +K+ K+ ++P SM+ + +D + ED ++ P Sbjct: 495 TPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDSTLELPLDSATAQ 554 Query: 420 MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 241 ++ E L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL KL Sbjct: 555 SLKVATHEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 614 Query: 240 KRSVSTQGFDVYLD 199 + ++ +LD Sbjct: 615 RHPSRSETLRSFLD 628
>RPOD_MYCGE (P47491) RNA polymerase sigma factor rpoD (Sigma-A)| Length = 497 Score = 61.2 bits (147), Expect = 2e-09 Identities = 38/132 (28%), Positives = 73/132 (55%), Gaps = 7/132 (5%) Frame = -3 Query: 603 PTNQNVARRAG-----ISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPD 439 PT++ +A + G +++K+A++K + P S+ V ++ F + +D + +PD Sbjct: 349 PTDEELAEKMGGQAEGFNVKKIAEIKRLSLDPVSLDKTVGHDEESQFGDFVKDTDAQTPD 408 Query: 438 LVVDRIMMRQQVREFLGI-LSTREKEIVEHRFGIYD-GEPKTLHVIGDMYGLSKERIRQL 265 + +++ E L LS +E+ IV R G+ EPKTL +G + +E+IRQ+ Sbjct: 409 EFTESRSNSEKIDELLNNNLSEQEELIVRMRIGMPPYNEPKTLDEVGQKILIPREKIRQI 468 Query: 264 QNRALDKLKRSV 229 +N+A+ KL+ +V Sbjct: 469 ENKAIRKLRHAV 480
>RPOD_SHEVI (O24744) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 614 Score = 61.2 bits (147), Expect = 2e-09 Identities = 36/135 (26%), Positives = 68/135 (50%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A R + +K+ K+ ++P SM+ + ++ + ED ++ P Sbjct: 479 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATG 538 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +R E L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL K Sbjct: 539 ESLRNATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK 598 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ +LD Sbjct: 599 LRHPSRSEILKSFLD 613
>RPOD_BUCAI (P57163) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 612 Score = 60.8 bits (146), Expect = 3e-09 Identities = 35/135 (25%), Positives = 68/135 (50%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + ++ + I +K+ K+ ++P SM+ + +D + ED ++ P Sbjct: 477 PTPEELSEKMLIPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDTTLELPLDSATS 536 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +R + L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL K Sbjct: 537 ESLRSATHDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK 596 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ +LD Sbjct: 597 LRHPSRSEVLRSFLD 611
>RPOD_BUCAP (P32001) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 617 Score = 60.8 bits (146), Expect = 3e-09 Identities = 35/135 (25%), Positives = 68/135 (50%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + ++ + I +K+ K+ ++P SM+ + +D + ED ++ P Sbjct: 482 PTPEELSEKMLIPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDTTLELPLDSATS 541 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +R + L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL K Sbjct: 542 ESLRSATHDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK 601 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ +LD Sbjct: 602 LRHPSRSEVLRSFLD 616
>RPOD_SERMA (P43344) RNA polymerase sigma factor rpoD (Sigma-70) (Fragment)| Length = 215 Score = 60.5 bits (145), Expect = 4e-09 Identities = 35/135 (25%), Positives = 68/135 (50%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A R + +K+ K+ ++P SM+ + ++ + ED ++ P Sbjct: 80 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATS 139 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +R + L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL K Sbjct: 140 ESLRSATHDVLAGLTAREXKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK 199 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ +LD Sbjct: 200 LRHPSRSEVLRSFLD 214
>RPOD_SALTY (P0A2E3) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 615 Score = 60.1 bits (144), Expect = 5e-09 Identities = 35/135 (25%), Positives = 68/135 (50%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A R + +K+ K+ ++P SM+ + ++ + ED ++ P Sbjct: 480 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATT 539 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +R + L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL K Sbjct: 540 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK 599 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ +LD Sbjct: 600 LRHPSRSEVLRSFLD 614
>RPOD_SALTI (P0A2E4) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 615 Score = 60.1 bits (144), Expect = 5e-09 Identities = 35/135 (25%), Positives = 68/135 (50%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A R + +K+ K+ ++P SM+ + ++ + ED ++ P Sbjct: 480 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATT 539 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +R + L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL K Sbjct: 540 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK 599 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ +LD Sbjct: 600 LRHPSRSEVLRSFLD 614
>RPOD_ECOLI (P00579) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 613 Score = 59.7 bits (143), Expect = 6e-09 Identities = 35/135 (25%), Positives = 68/135 (50%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A R + +K+ K+ ++P SM+ + ++ + ED ++ P Sbjct: 478 PTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATT 537 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +R + L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL K Sbjct: 538 ESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 597 Query: 243 LKRSVSTQGFDVYLD 199 L+ ++ +LD Sbjct: 598 LRHPSRSEVLRSFLD 612
>RPOS_YEREN (P47765) RNA polymerase sigma factor rpoS| Length = 331 Score = 59.7 bits (143), Expect = 6e-09 Identities = 30/132 (22%), Positives = 67/132 (50%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P+ + +A + ++ ++++ + S+ + + +I D N + P+ Sbjct: 194 PSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILSDENENGPEDTTQD 253 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 M+Q + ++L L+ +++E++ RFG+ E TL +G GL++ER+RQ+Q L + Sbjct: 254 DDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRR 313 Query: 243 LKRSVSTQGFDV 208 L+ + QG + Sbjct: 314 LREILQAQGLSI 325
>RPOD_NEIGO (P52325) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 642 Score = 59.7 bits (143), Expect = 6e-09 Identities = 35/135 (25%), Positives = 66/135 (48%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P + +A + +K+ K+ ++P SM+ + +D + ED N +P Sbjct: 502 PDSAKLAELMQMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDANNVAPADAAMY 561 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 + + +E L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL K Sbjct: 562 TSLHEVTKEILESLTPREAKVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRK 621 Query: 243 LKRSVSTQGFDVYLD 199 L+ + +LD Sbjct: 622 LRHPTRSDRLRSFLD 636
>RPSC_SYNY3 (Q59996) Probable RNA polymerase sigma-C factor| Length = 404 Score = 59.3 bits (142), Expect = 8e-09 Identities = 35/122 (28%), Positives = 68/122 (55%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P VA G++ E++ ++ + + S++ +V + ++ E + SP+ + R Sbjct: 268 PKIDEVAEELGMTPEQVREVLTQVPRSVSLELKVGQDKDTELMDLLET-DTQSPEDELMR 326 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 ++ ++E L L+ RE+E++ RFG DG +L IG + LS+ER+RQ++ +AL K Sbjct: 327 EALQNDMQEILLDLTPREQEVIALRFGFQDGVAHSLSEIGRILNLSRERVRQIEAKALQK 386 Query: 243 LK 238 L+ Sbjct: 387 LR 388
>RPOS_SHIFL (P35540) RNA polymerase sigma factor rpoS| Length = 330 Score = 59.3 bits (142), Expect = 8e-09 Identities = 30/132 (22%), Positives = 68/132 (51%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P+ + +A + ++ ++++ + S+ + + +I D + P+ Sbjct: 193 PSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQD 252 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 M+Q + ++L L+ +++E++ RFG+ E TL +G GL++ER+RQ+Q L + Sbjct: 253 DDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRR 312 Query: 243 LKRSVSTQGFDV 208 L+ + TQG ++ Sbjct: 313 LREILQTQGLNI 324
>RPOS_SALTY (P0A2E5) RNA polymerase sigma factor rpoS (Sigma-38)| Length = 330 Score = 59.3 bits (142), Expect = 8e-09 Identities = 30/132 (22%), Positives = 68/132 (51%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P+ + +A + ++ ++++ + S+ + + +I D + P+ Sbjct: 193 PSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQD 252 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 M+Q + ++L L+ +++E++ RFG+ E TL +G GL++ER+RQ+Q L + Sbjct: 253 DDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRR 312 Query: 243 LKRSVSTQGFDV 208 L+ + TQG ++ Sbjct: 313 LREILQTQGLNI 324
>RPOS_SALTI (P0A2E6) RNA polymerase sigma factor rpoS (Sigma-38)| Length = 330 Score = 59.3 bits (142), Expect = 8e-09 Identities = 30/132 (22%), Positives = 68/132 (51%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P+ + +A + ++ ++++ + S+ + + +I D + P+ Sbjct: 193 PSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQD 252 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 M+Q + ++L L+ +++E++ RFG+ E TL +G GL++ER+RQ+Q L + Sbjct: 253 DDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRR 312 Query: 243 LKRSVSTQGFDV 208 L+ + TQG ++ Sbjct: 313 LREILQTQGLNI 324
>RPOS_SALDU (P0A2E7) RNA polymerase sigma factor rpoS (Sigma-38)| Length = 330 Score = 59.3 bits (142), Expect = 8e-09 Identities = 30/132 (22%), Positives = 68/132 (51%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P+ + +A + ++ ++++ + S+ + + +I D + P+ Sbjct: 193 PSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQD 252 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 M+Q + ++L L+ +++E++ RFG+ E TL +G GL++ER+RQ+Q L + Sbjct: 253 DDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRR 312 Query: 243 LKRSVSTQGFDV 208 L+ + TQG ++ Sbjct: 313 LREILQTQGLNI 324
>RPOS_ECOLI (P13445) RNA polymerase sigma factor rpoS (Sigma-38)| Length = 330 Score = 59.3 bits (142), Expect = 8e-09 Identities = 30/132 (22%), Positives = 68/132 (51%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 P+ + +A + ++ ++++ + S+ + + +I D + P+ Sbjct: 193 PSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQD 252 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 M+Q + ++L L+ +++E++ RFG+ E TL +G GL++ER+RQ+Q L + Sbjct: 253 DDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRR 312 Query: 243 LKRSVSTQGFDV 208 L+ + TQG ++ Sbjct: 313 LREILQTQGLNI 324
>RPOS_VIBCH (O51804) RNA polymerase sigma factor rpoS (Sigma-38 factor)| Length = 335 Score = 57.4 bits (137), Expect = 3e-08 Identities = 31/132 (23%), Positives = 64/132 (48%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDR 424 PT + +A ++ + K+ + S+ + + +I D + P+ Sbjct: 194 PTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQD 253 Query: 423 IMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 244 +R+ + +L L+ ++KE++ RFG+ EP TL +G L++ER+RQ+Q L + Sbjct: 254 DDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRR 313 Query: 243 LKRSVSTQGFDV 208 L+ + QG ++ Sbjct: 314 LREILVKQGLNM 325
>RPSB_ANASP (Q03065) RNA polymerase sigma-B factor| Length = 332 Score = 55.8 bits (133), Expect = 9e-08 Identities = 31/118 (26%), Positives = 63/118 (53%) Frame = -3 Query: 588 VARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQ 409 +A+ + ++ + R+P S+ ++ Q++ +D + SP+ +R ++ Q Sbjct: 205 IAQALNLEPSQIREYLQLVRQPVSLDMRIGFEQDTQLQDLLKDDGM-SPERYAERELLYQ 263 Query: 408 QVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKR 235 + L L+ ++KE++ RFG+ G TL I G+S+ER+RQ++ +AL L+R Sbjct: 264 DIHNLLAKLTPQQKEVLILRFGLAGGCELTLVQISQRMGISRERVRQVEKQALTLLRR 321
>RPSC_MYXXA (Q07083) RNA polymerase sigma-C factor| Length = 295 Score = 53.5 bits (127), Expect = 5e-07 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 15/144 (10%) Frame = -3 Query: 570 ISIEKLA-KLKAKTRKPRSMQDQVWSNDA-----------VTFQEITEDPNIDSPDLVVD 427 ++ E++A KL K + R M+ ++ D T + E ++ + D V D Sbjct: 153 VNAEEIARKLNVKASEVREMEQRMGGRDLSLDAPMGEDGDATHLDFVESESVSAVDEVAD 212 Query: 426 RI---MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNR 256 R + R+ V+ L L RE+ I+E R + TL +G+ +G S+ER RQL+ R Sbjct: 213 RQQANLTRELVQRALRRLDPRERFIIEQR--VMGDAEMTLSELGEHFGFSRERARQLEIR 270 Query: 255 ALDKLKRSVSTQGFDVYLDLLTSN 184 A DKLK ++ T + +D T N Sbjct: 271 AKDKLKLALVTLMAEAGVDESTLN 294
>RPOD_MYCPN (P78022) RNA polymerase sigma factor rpoD (Sigma-A)| Length = 499 Score = 52.8 bits (125), Expect = 8e-07 Identities = 35/132 (26%), Positives = 68/132 (51%), Gaps = 7/132 (5%) Frame = -3 Query: 603 PTNQNVARRAG-----ISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPD 439 PT + +A + G +++K+A++K + P S+ V ++ F + D + PD Sbjct: 351 PTAEELAEKMGGQAEGFTVKKIAEIKRLSLDPVSLDKTVGHDEESQFGDFVRDTDAQMPD 410 Query: 438 LVVDRIMMRQQVREFLG-ILSTREKEIVEHRFGIYD-GEPKTLHVIGDMYGLSKERIRQL 265 + +++ E L LS +E+ IV R G+ E KTL + + +E+IRQ+ Sbjct: 411 EFTESRSNYEKIDELLNNCLSEQEELIVRMRIGMPPYNETKTLDEVSQKIKIPREKIRQI 470 Query: 264 QNRALDKLKRSV 229 + +A+ KL+++V Sbjct: 471 ETKAIRKLRQAV 482
>RPOS_PSEAE (P45684) RNA polymerase sigma factor rpoS| Length = 334 Score = 52.8 bits (125), Expect = 8e-07 Identities = 28/93 (30%), Positives = 52/93 (55%) Frame = -3 Query: 495 NDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTL 316 +D +T+D D +L+ D + + + ++L L+ +++E+V RFG+ E TL Sbjct: 235 SDKTLLDTLTDDRPTDPCELLQDDDLS-ESIDQWLTELTDKQREVVIRRFGLRGHESSTL 293 Query: 315 HVIGDMYGLSKERIRQLQNRALDKLKRSVSTQG 217 +G GL++ER+RQ+Q AL +L+ + G Sbjct: 294 EEVGQEIGLTRERVRQIQVEALKRLREILEKNG 326
>RP32_ZYMMO (P50512) RNA polymerase sigma-32 factor| Length = 302 Score = 50.1 bits (118), Expect = 5e-06 Identities = 34/121 (28%), Positives = 62/121 (51%) Frame = -3 Query: 591 NVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMR 412 N+ RR + + + + MQD + + + Q+I E+ LV ++++ Sbjct: 179 NMNRRMAMGGDSSLNITMREDGEGQMQDWLVDQEPLQDQQIEEEEE----SLVRHKLLI- 233 Query: 411 QQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRS 232 E + L+ REK I+ R PKTL + +YG+S+ER+RQ++ RA DKL+++ Sbjct: 234 ----EAMDKLNDREKHILTERR--LSDNPKTLEELSQVYGVSRERVRQIEVRAFDKLQKA 287 Query: 231 V 229 + Sbjct: 288 I 288
>RP35_BACTK (P62179) RNA polymerase sigma-35 factor precursor| Length = 239 Score = 49.3 bits (116), Expect = 9e-06 Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 2/89 (2%) Frame = -3 Query: 495 NDAVTFQEITEDPNIDSPDL--VVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPK 322 N+ + + D +I + DL VDR ++ + + + L+ REK+I+E RFG+ GE K Sbjct: 149 NELLLSDVLGTDDDIITKDLEATVDRHLLMKALHQ----LNDREKQIMELRFGLAGGEEK 204 Query: 321 TLHVIGDMYGLSKERIRQLQNRALDKLKR 235 T + DM G+S+ I +L+ R + +L++ Sbjct: 205 TQKDVADMLGISQSYISRLEKRIIKRLRK 233
>RP35_BACCR (P62178) RNA polymerase sigma-35 factor precursor| Length = 239 Score = 49.3 bits (116), Expect = 9e-06 Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 2/89 (2%) Frame = -3 Query: 495 NDAVTFQEITEDPNIDSPDL--VVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPK 322 N+ + + D +I + DL VDR ++ + + + L+ REK+I+E RFG+ GE K Sbjct: 149 NELLLSDVLGTDDDIITKDLEATVDRHLLMKALHQ----LNDREKQIMELRFGLAGGEEK 204 Query: 321 TLHVIGDMYGLSKERIRQLQNRALDKLKR 235 T + DM G+S+ I +L+ R + +L++ Sbjct: 205 TQKDVADMLGISQSYISRLEKRIIKRLRK 233
>RP35_BACAN (P62177) RNA polymerase sigma-35 factor precursor| Length = 239 Score = 49.3 bits (116), Expect = 9e-06 Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 2/89 (2%) Frame = -3 Query: 495 NDAVTFQEITEDPNIDSPDL--VVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPK 322 N+ + + D +I + DL VDR ++ + + + L+ REK+I+E RFG+ GE K Sbjct: 149 NELLLSDVLGTDDDIITKDLEATVDRHLLMKALHQ----LNDREKQIMELRFGLAGGEEK 204 Query: 321 TLHVIGDMYGLSKERIRQLQNRALDKLKR 235 T + DM G+S+ I +L+ R + +L++ Sbjct: 205 TQKDVADMLGISQSYISRLEKRIIKRLRK 233
>RPSB_MYXXA (P19433) RNA polymerase sigma-B factor| Length = 246 Score = 49.3 bits (116), Expect = 9e-06 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 15/132 (11%) Frame = -3 Query: 576 AGISIEKLAK-LKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI------- 421 A ++++ +A+ L K + R M+ ++ D + ED D VV Sbjct: 102 AAVNVDDIARRLHVKPGEVREMEQRMGGRDLSLDAPMGEDGGNSHVDFVVSAAAPQDDEF 161 Query: 420 -------MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQ 262 ++ +VR L L RE I+E R + + P TL +G+ +G S+ER RQL+ Sbjct: 162 ADKEEAGLINARVRAALMRLDPREPFIIEQR--VMNERPMTLKELGEHFGFSRERARQLE 219 Query: 261 NRALDKLKRSVS 226 RA DKLK ++ Sbjct: 220 IRAKDKLKSELA 231
>RPSB_STIAU (Q01624) RNA polymerase sigma-B factor| Length = 296 Score = 48.9 bits (115), Expect = 1e-05 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 15/132 (11%) Frame = -3 Query: 576 AGISIEKLA-KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI------- 421 A ++++++A KL K + R M+ ++ D + ED D V Sbjct: 152 AVVNVDEIANKLNVKASEVREMEQRMGGRDLSLDAPMGEDGGNSHVDFVASAAAPQDDEF 211 Query: 420 -------MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQ 262 ++ +V L L RE+ I+E R + + P TL +G+ +G S+ER RQL+ Sbjct: 212 ADKEEAGLINSRVHMALMRLDPRERFIIEQR--VMNERPMTLKELGEHFGFSRERARQLE 269 Query: 261 NRALDKLKRSVS 226 RA DKLK ++ Sbjct: 270 IRAKDKLKAELA 281
>RP28_BACTK (P62181) RNA polymerase sigma-28 factor precursor| Length = 237 Score = 48.5 bits (114), Expect = 1e-05 Identities = 28/102 (27%), Positives = 57/102 (55%), Gaps = 3/102 (2%) Frame = -3 Query: 537 KTRKPRSMQDQVWSN---DAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREK 367 KT+K S+ D + + + ++ +I + + D D++ M ++++E++ IL REK Sbjct: 122 KTKKDVSLHDPIGQDKEGNEISLIDILKSESEDVIDMI-QLSMELEKIKEYIDILDEREK 180 Query: 366 EIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 241 E++ RFG+ + KT I G+S+ + +++ RAL K+ Sbjct: 181 EVIVKRFGLGLDKEKTQREIAKALGISRSYVSRIEKRALMKM 222
>RP28_BACCR (P62180) RNA polymerase sigma-28 factor precursor| Length = 237 Score = 48.5 bits (114), Expect = 1e-05 Identities = 28/102 (27%), Positives = 57/102 (55%), Gaps = 3/102 (2%) Frame = -3 Query: 537 KTRKPRSMQDQVWSN---DAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREK 367 KT+K S+ D + + + ++ +I + + D D++ M ++++E++ IL REK Sbjct: 122 KTKKDVSLHDPIGQDKEGNEISLIDILKSESEDVIDMI-QLSMELEKIKEYIDILDEREK 180 Query: 366 EIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 241 E++ RFG+ + KT I G+S+ + +++ RAL K+ Sbjct: 181 EVIVKRFGLGLDKEKTQREIAKALGISRSYVSRIEKRALMKM 222
>RP28_BACAN (P62182) RNA polymerase sigma-28 factor precursor| Length = 237 Score = 48.5 bits (114), Expect = 1e-05 Identities = 28/102 (27%), Positives = 57/102 (55%), Gaps = 3/102 (2%) Frame = -3 Query: 537 KTRKPRSMQDQVWSN---DAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREK 367 KT+K S+ D + + + ++ +I + + D D++ M ++++E++ IL REK Sbjct: 122 KTKKDVSLHDPIGQDKEGNEISLIDILKSESEDVIDMI-QLSMELEKIKEYIDILDEREK 180 Query: 366 EIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 241 E++ RFG+ + KT I G+S+ + +++ RAL K+ Sbjct: 181 EVIVKRFGLGLDKEKTQREIAKALGISRSYVSRIEKRALMKM 222
>RPSK_BACSU (P12254) RNA polymerase sigma-K factor precursor (Sigma-27)| Length = 294 Score = 47.8 bits (112), Expect = 3e-05 Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 8/115 (6%) Frame = -3 Query: 561 EKLAKLKA--KTRKPRSMQDQVWSN---DAVTFQEITEDPNIDSPDLVVDRIMMR---QQ 406 E L L+A KT+K S+ D + + + ++ ++ + N D V+D I + ++ Sbjct: 166 EILMHLRALKKTKKDVSLHDPIGQDKEGNEISLIDVLKSENED----VIDTIQLNMELEK 221 Query: 405 VREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 241 V++++ IL REKE++ RFG+ + KT I G+S+ + +++ RAL K+ Sbjct: 222 VKQYIDILDDREKEVIVGRFGLDLKKEKTQREIAKELGISRSYVSRIEKRALMKM 276
>RPSE_BACSU (P06222) RNA polymerase sigma-E factor precursor (Sigma-29) (P31)| (Stage II sporulation protein GB) Length = 239 Score = 45.1 bits (105), Expect = 2e-04 Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 2/89 (2%) Frame = -3 Query: 495 NDAVTFQEITEDPNIDSPDLV--VDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPK 322 N+ + + D +I + D+ VD+ ++++ + + L+ REK+I+E RFG+ E K Sbjct: 149 NELLLSDVLGTDDDIITKDIEANVDKKLLKKALEQ----LNEREKQIMELRFGLVGEEEK 204 Query: 321 TLHVIGDMYGLSKERIRQLQNRALDKLKR 235 T + DM G+S+ I +L+ R + +L++ Sbjct: 205 TQKDVADMMGISQSYISRLEKRIIKRLRK 233
>RPSF_BACLI (P26764) RNA polymerase sigma-F factor (Stage II sporulation| protein AC) (Sporulation sigma factor) Length = 255 Score = 43.9 bits (102), Expect = 4e-04 Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 2/127 (1%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDA--VTFQEITEDPNIDSPDLVV 430 PT Q +A IS E++ + R P S+ + V+ ND +T + D S + Sbjct: 135 PTVQEIADYLEISSEEVVMAQEAVRSPSSIHETVYENDGDPITLLDQIAD---QSEEKWF 191 Query: 429 DRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRAL 250 D+I +++ +++ L REK IV R+ + KT + D G+S+ ++ +L+ + L Sbjct: 192 DKIALKEAIKD----LDEREKLIVYLRY----YKDKTQSEVADRLGISQVQVSRLEKKIL 243 Query: 249 DKLKRSV 229 ++K + Sbjct: 244 KQIKNQM 250
>RP32_VIBVU (Q8DD54) RNA polymerase sigma-32 factor| Length = 285 Score = 43.1 bits (100), Expect = 6e-04 Identities = 24/55 (43%), Positives = 33/55 (60%) Frame = -3 Query: 393 LGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 229 L L R + IV R+ D + TL + +MYG+S ERIRQL+ A+ KLK +V Sbjct: 230 LASLDERSQHIVRSRW--LDDDKATLQDLAEMYGVSAERIRQLEKNAMKKLKMAV 282
>RP32_AGRTU (P50507) RNA polymerase sigma-32 factor| Length = 300 Score = 43.1 bits (100), Expect = 6e-04 Identities = 28/97 (28%), Positives = 50/97 (51%) Frame = -3 Query: 501 WSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPK 322 W + V E E I+ +L R M+ + +G+L+ RE+ I E R D P Sbjct: 200 WQDWLVDDHESQEAVLIEQDELETRRRMLAKA----MGVLNDRERRIFEARRLAED--PV 253 Query: 321 TLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFD 211 TL + + +S+ER+RQ++ RA +K++ +V + + Sbjct: 254 TLEELSSEFDISRERVRQIEVRAFEKVQEAVQKEALE 290
>RP32_VIBCH (P50511) RNA polymerase sigma-32 factor| Length = 286 Score = 43.1 bits (100), Expect = 6e-04 Identities = 25/61 (40%), Positives = 36/61 (59%) Frame = -3 Query: 411 QQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRS 232 Q++ L L R + IV R+ + D TL + +MYG+S ERIRQL+ A+ KLK + Sbjct: 224 QRLSMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEA 282 Query: 231 V 229 V Sbjct: 283 V 283
>RP32_CAUCR (P48194) RNA polymerase sigma-32 factor| Length = 295 Score = 42.0 bits (97), Expect = 0.001 Identities = 27/108 (25%), Positives = 56/108 (51%) Frame = -3 Query: 552 AKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTR 373 A L A R + Q W D ++++++ + + ++ + + E + L+ R Sbjct: 184 ASLNAPLRADGESEWQDWLADE---EQVSQETRVAEDE---EKSLRMSLLEEAMVELTDR 237 Query: 372 EKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 229 E+ I+ R +P TL + YG+S+ER+RQ++ RA +KL++++ Sbjct: 238 ERHILTERR--LKDDPTTLEELAAQYGVSRERVRQIEVRAFEKLQKTM 283
>RPSE_CLOAB (P33657) RNA polymerase sigma-E factor| Length = 235 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/53 (37%), Positives = 33/53 (62%) Frame = -3 Query: 384 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVS 226 L+ REK IVE R+G+ KT + DM G+S+ I +L+ R + +LK+ ++ Sbjct: 180 LNEREKRIVELRYGLTGVGEKTQKEVADMLGISQSYISRLEKRIIKRLKKEIN 232
>RP32_HAEIN (P44404) RNA polymerase sigma-32 factor| Length = 281 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/62 (38%), Positives = 36/62 (58%) Frame = -3 Query: 411 QQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRS 232 +Q+ L L R ++I++ R+ D TLH + Y +S ERIRQL+ AL KLK + Sbjct: 221 EQLGAALQSLDARSQDIIKARW--LDDNKATLHDLAAKYNVSAERIRQLETNALKKLKSA 278 Query: 231 VS 226 V+ Sbjct: 279 VN 280
>RP32_SERMA (P50510) RNA polymerase sigma-32 factor| Length = 285 Score = 40.8 bits (94), Expect = 0.003 Identities = 20/52 (38%), Positives = 31/52 (59%) Frame = -3 Query: 384 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 229 L R + I+ R+ + D TL + D YG+S ER+RQL+ A+ KLK ++ Sbjct: 233 LDERSQHIIRARW-LDDDNKSTLQELADQYGVSAERVRQLEKNAMKKLKMAI 283
>RP32_PSEAE (P42378) RNA polymerase sigma-32 factor| Length = 284 Score = 40.0 bits (92), Expect = 0.005 Identities = 22/56 (39%), Positives = 33/56 (58%) Frame = -3 Query: 405 VREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 238 + E L L R ++I++ R+ E TLH + + Y +S ERIRQL+ A+ KLK Sbjct: 226 LHEALEGLDERSRDILQQRW--LSEEKATLHDLAEKYNVSAERIRQLEKNAMSKLK 279
>RP32_PROMI (P50509) RNA polymerase sigma-32 factor| Length = 284 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/52 (36%), Positives = 32/52 (61%) Frame = -3 Query: 384 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 229 L R ++I+ R+ + D TL + D YG+S ER+RQL+ A+ KL+ ++ Sbjct: 232 LDERSQDIIRARW-LEDDNKSTLQELADKYGVSAERVRQLEKNAMKKLRLAI 282
>RP32_BUCBP (Q89B27) RNA polymerase sigma-32 factor| Length = 287 Score = 39.3 bits (90), Expect = 0.009 Identities = 21/57 (36%), Positives = 30/57 (52%) Frame = -3 Query: 393 LGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVST 223 L L R + I+ R+ TL I YG+S ER+RQL+ A+ KLK ++ T Sbjct: 231 LSSLDERSRNIIHARWLDDSDHKMTLREIAHNYGISAERVRQLEKNAMKKLKVAIET 287
>RP32_ENTCL (P50508) RNA polymerase sigma-32 factor| Length = 285 Score = 38.5 bits (88), Expect = 0.015 Identities = 18/52 (34%), Positives = 32/52 (61%) Frame = -3 Query: 384 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 229 L R ++I+ R+ + + TL + D YG+S ER+RQL+ A+ KL+ ++ Sbjct: 233 LDERSQDIIRARW-LDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 283
>RP32_ECOLI (P0AGB3) RNA polymerase sigma-32 factor (Heat shock regulatory| protein F33.4) Length = 284 Score = 38.5 bits (88), Expect = 0.015 Identities = 18/52 (34%), Positives = 32/52 (61%) Frame = -3 Query: 384 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 229 L R ++I+ R+ + + TL + D YG+S ER+RQL+ A+ KL+ ++ Sbjct: 232 LDERSQDIIRARW-LDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 282
>RP32_ECOL6 (P0AGB4) RNA polymerase sigma-32 factor (Heat shock regulatory| protein F33.4) Length = 284 Score = 38.5 bits (88), Expect = 0.015 Identities = 18/52 (34%), Positives = 32/52 (61%) Frame = -3 Query: 384 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 229 L R ++I+ R+ + + TL + D YG+S ER+RQL+ A+ KL+ ++ Sbjct: 232 LDERSQDIIRARW-LDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 282
>RP32_ECO57 (P0AGB5) RNA polymerase sigma-32 factor (Heat shock regulatory| protein F33.4) Length = 284 Score = 38.5 bits (88), Expect = 0.015 Identities = 18/52 (34%), Positives = 32/52 (61%) Frame = -3 Query: 384 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 229 L R ++I+ R+ + + TL + D YG+S ER+RQL+ A+ KL+ ++ Sbjct: 232 LDERSQDIIRARW-LDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 282
>RP32_CITFR (P11539) RNA polymerase sigma-32 factor (Heat shock regulatory| protein) Length = 284 Score = 38.5 bits (88), Expect = 0.015 Identities = 18/52 (34%), Positives = 32/52 (61%) Frame = -3 Query: 384 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 229 L R ++I+ R+ + + TL + D YG+S ER+RQL+ A+ KL+ ++ Sbjct: 232 LDERSQDIIRARW-LDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 282
>RP32_BUCAP (Q8KA76) RNA polymerase sigma-32 factor| Length = 285 Score = 37.7 bits (86), Expect = 0.026 Identities = 20/52 (38%), Positives = 31/52 (59%) Frame = -3 Query: 384 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 229 L R + I+ R+ + E TL I + YG+S ER+RQL+ A+ KLK ++ Sbjct: 233 LDERSRNIIRARW-LDKKEKNTLQKIANNYGISAERVRQLEKNAMKKLKIAI 283
>RP32_BUCAI (O05385) RNA polymerase sigma-32 factor| Length = 284 Score = 37.0 bits (84), Expect = 0.044 Identities = 19/52 (36%), Positives = 31/52 (59%) Frame = -3 Query: 384 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 229 L R + I+ R+ + + TL I + YG+S ER+RQL+ A+ KLK ++ Sbjct: 232 LDERSRHIIHARW-LDKNKKNTLQNIANNYGISAERVRQLEKNAMKKLKLAI 282
>RPSB_BACSU (P06574) RNA polymerase sigma-B factor (Sigma-37) (General stress| protein 84) (GSP84) Length = 261 Score = 35.8 bits (81), Expect = 0.099 Identities = 18/67 (26%), Positives = 40/67 (59%) Frame = -3 Query: 429 DRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRAL 250 +R+ + ++ L +LS REK+I++ + + +T GD+ G+S+ + +LQ +A+ Sbjct: 190 ERVNQQLMLQSVLHVLSDREKQIIDLTYIQNKSQKET----GDILGISQMHVSRLQRKAV 245 Query: 249 DKLKRSV 229 KL+ ++ Sbjct: 246 KKLREAL 252
>RPSW_STRCO (P17211) RNA polymerase sigma factor whiG| Length = 280 Score = 35.8 bits (81), Expect = 0.099 Identities = 29/135 (21%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Frame = -3 Query: 603 PTNQNVARRAGISIEKLAKLKAKTRKPR--SMQDQVWSNDA----VTFQEITEDPNIDSP 442 P+ VA GI++E L + ++ ++++ + + ++ + ED D+P Sbjct: 149 PSESEVAVEMGIAVEDLHAVFSQLSLANVVALEELLHAGGEGGGRLSLMDTLEDTAADNP 208 Query: 441 DLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQ 262 V + +R+ + + L REK +V +Y E TL IG++ G+++ R+ Q+ Sbjct: 209 VEVAEDRELRRLLARAINTLPEREKTVVT----LYYYEGLTLAEIGNVLGVTESRVSQIH 264 Query: 261 NRALDKLKRSVSTQG 217 +++ +L+ ++ G Sbjct: 265 TKSVLQLRAKLAGFG 279
>PYRF_RHIME (Q92SN8) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP| decarboxylase) (OMPDCase) (OMPdecase) Length = 234 Score = 32.7 bits (73), Expect = 0.84 Identities = 19/48 (39%), Positives = 27/48 (56%) Frame = -2 Query: 298 VRLVQGADPAAPEPGLGQAEAERVDAGVRRLLGPADLERLGGASFVLG 155 VR + G D A PG+ A AE+ D +R++ PAD R G + V+G Sbjct: 163 VRKIIGGDMALVTPGIRPAGAEKGDQ--KRVMTPADALRAGSSHLVVG 208
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 31.2 bits (69), Expect = 2.4 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = -2 Query: 562 REAGETQSEDQKATINAGSSLVQRRSHLPGDHGGPEHRFAGPRRGQDHDEAAGAG 398 R G +SE +A + G+ H+ GP H G RG D+DEA G G Sbjct: 2369 RVPGPARSESPRACRHGGARWPASGPHVSEGPPGPRHH--GYYRGSDYDEADGPG 2421
>PCF_BACSU (P39784) Positive control factor| Length = 169 Score = 30.8 bits (68), Expect = 3.2 Identities = 19/60 (31%), Positives = 33/60 (55%) Frame = -3 Query: 414 RQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKR 235 R ++RE L +L+ REKE+ F ++ E + I D+ G+ K ++ RA K++R Sbjct: 104 RDRIREALALLTDREKEM----FLLHKVECFSYERIADLLGVKKSTVQTTIKRASLKMQR 159
>RM19_CAEEL (Q95Y83) Probable 39S ribosomal protein L19, mitochondrial| precursor Length = 288 Score = 30.4 bits (67), Expect = 4.2 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 15/103 (14%) Frame = -3 Query: 525 PRSMQDQVWSNDAVTFQEITEDP------NIDSPDLVVDRIM--------MRQQVREFLG 388 P +Q VW+ +E+ NID P+ V I+ + + F+G Sbjct: 50 PDFLQSPVWNRRNALKEELERQDMLERRMNIDIPEFYVGSIVAVTSSDKNLGSKEHRFVG 109 Query: 387 ILSTREKEIVEHRFGIYDG-EPKTLHVIGDMYGLSKERIRQLQ 262 I REKE + H+F + + E + V+ D+Y + ++I L+ Sbjct: 110 ICIRREKEGLLHQFTLRNTIENIGVEVVYDLYNPTIKKIETLK 152
>UTR1_YEAST (P21373) NAD(+) kinase (EC 2.7.1.23) (Unknown transcript 1 protein)| Length = 530 Score = 30.4 bits (67), Expect = 4.2 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%) Frame = -3 Query: 447 SPDLVVDRIM------MRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLS 286 SPD ++ I +R+Q + F ILS + +E H + + L VI D Y L Sbjct: 429 SPDEFINSISRQLNWNVREQQKSFTHILSQKNQEKYAHEANKVRNQAEPLEVIRDKYSLE 488 Query: 285 KERIRQLQNRALDK 244 + ++ N + D+ Sbjct: 489 ADATKENNNGSDDE 502
>MYOC_MACFA (Q863A3) Myocilin precursor (Trabecular meshwork-induced| glucocorticoid response protein) Length = 491 Score = 30.4 bits (67), Expect = 4.2 Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 21/113 (18%) Frame = -3 Query: 597 NQNVARRAGISIEKLAKLK----------AKTRKPRSMQDQVWSNDAVTFQEI-TEDPNI 451 N+N+ARR S +++A+L+ A+ P S + W+ D + FQE+ +E + Sbjct: 150 NENLARRLESSSQEVARLRRGQCPQTRDTARDVPPGSREVSTWNLDTLAFQELKSELTEV 209 Query: 450 DSPDLVVDRIMMRQQVRE---------FLG-ILSTREKEIVEHRFGIYDGEPK 322 + ++ + Q RE ++G L+ R E + ++G++ +PK Sbjct: 210 PASRILKESPSGHLQSREGDNGCGELVWVGEPLTLRTAETITGKYGVWMRDPK 262
>MYOC_HUMAN (Q99972) Myocilin precursor (Trabecular meshwork-induced| glucocorticoid response protein) Length = 504 Score = 29.6 bits (65), Expect = 7.1 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 10/56 (17%) Frame = -3 Query: 597 NQNVARRAGISIEKLAKLK----------AKTRKPRSMQDQVWSNDAVTFQEITED 460 N+N+ARR S +++A+L+ A+ P S + W+ D + FQE+ + Sbjct: 163 NENLARRLESSSQEVARLRRGQCPQTRDTARAVPPGSREVSTWNLDTLAFQELKSE 218
>KIP2_ASHGO (Q8J1G1) Kinesin-like protein KIP2| Length = 685 Score = 29.6 bits (65), Expect = 7.1 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%) Frame = -2 Query: 517 NAGSSLVQR---RSHLPGDHGGPEHRFAGPRRGQ 425 +AG+SL Q RS G H GP+ R GP +GQ Sbjct: 15 SAGASLPQTPGSRSFALGAHPGPQKRIGGPAQGQ 48
>RS3_BURPS (Q63Q17) 30S ribosomal protein S3| Length = 266 Score = 29.6 bits (65), Expect = 7.1 Identities = 20/59 (33%), Positives = 24/59 (40%) Frame = -2 Query: 574 GHLDREAGETQSEDQKATINAGSSLVQRRSHLPGDHGGPEHRFAGPRRGQDHDEAAGAG 398 G D E +ED++ NA RR G+ G P R GPRRG E G Sbjct: 209 GRNDAPVVEEVTEDKRPRRNARPG--DRRPRRDGEGGAPGARRGGPRRGAGKPEDGKTG 265
>RS3_BURP1 (Q3JMR9) 30S ribosomal protein S3| Length = 266 Score = 29.6 bits (65), Expect = 7.1 Identities = 20/59 (33%), Positives = 24/59 (40%) Frame = -2 Query: 574 GHLDREAGETQSEDQKATINAGSSLVQRRSHLPGDHGGPEHRFAGPRRGQDHDEAAGAG 398 G D E +ED++ NA RR G+ G P R GPRRG E G Sbjct: 209 GRNDAPVVEEVTEDKRPRRNARPG--DRRPRRDGEGGAPGARRGGPRRGAGKPEDGKTG 265
>RS3_BURMA (Q62GL1) 30S ribosomal protein S3| Length = 266 Score = 29.6 bits (65), Expect = 7.1 Identities = 20/59 (33%), Positives = 24/59 (40%) Frame = -2 Query: 574 GHLDREAGETQSEDQKATINAGSSLVQRRSHLPGDHGGPEHRFAGPRRGQDHDEAAGAG 398 G D E +ED++ NA RR G+ G P R GPRRG E G Sbjct: 209 GRNDAPVVEEVTEDKRPRRNARPG--DRRPRRDGEGGAPGARRGGPRRGAGKPEDGKTG 265
>SUBD_BACLI (P00781) Subtilisin DY (EC 3.4.21.62)| Length = 274 Score = 29.3 bits (64), Expect = 9.3 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -2 Query: 229 VDAGVRRLLGPADLERLGGASFVLGSIVHTKGNTH 125 +D G+ DL+ +GGASFV G +T GN H Sbjct: 31 IDTGIAA--SHTDLKVVGGASFVSGESYNTDGNGH 63
>SUBT_BACLI (P00780) Subtilisin Carlsberg precursor (EC 3.4.21.62)| Length = 379 Score = 29.3 bits (64), Expect = 9.3 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -2 Query: 193 DLERLGGASFVLGSIVHTKGNTH 125 DL +GGASFV G +T GN H Sbjct: 146 DLNVVGGASFVAGEAYNTDGNGH 168
>RPSB_BACAN (Q9K5J6) RNA polymerase sigma-B factor| Length = 257 Score = 29.3 bits (64), Expect = 9.3 Identities = 24/120 (20%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Frame = -3 Query: 588 VARRAGISIEKLAKLK-AKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMR 412 +A G+S E++ ++ AK S D V N A + ++ + ++ R Sbjct: 138 IADHLGLSEEEVLEIMDAKNNYRVSSLDDVVEN-ASDGSSVARIESVGEVEQGYEQTERR 196 Query: 411 QQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRS 232 +++ +L+ EK ++ + F + T G+ G+S+ + +++ +A+ KLK++ Sbjct: 197 LVLKDIFNVLNETEKSVIHYIFEENLNQKDT----GERLGISQMHVSRIKRQAISKLKQA 252 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,311,753 Number of Sequences: 219361 Number of extensions: 973132 Number of successful extensions: 3637 Number of sequences better than 10.0: 129 Number of HSP's better than 10.0 without gapping: 3530 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3627 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
