| Clone Name | rbaal3i04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_480927.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2202 Score = 206 bits (104), Expect = 6e-50 Identities = 293/356 (82%) Strand = Plus / Minus Query: 233 ctccgcttcagcttgtccaaggcccggttctggagctgccggatccgctccttggacaag 292 |||| ||| ||||| |||| ||||||||||| ||||||| ||||| ||||||||||| Sbjct: 1800 ctcctcttgagcttctccagcgcccggttctgcagctgcctgatcctctccttggacagc 1741 Query: 293 ccgtacatgtcgccgatcacatggagcgtcttgggctcgccgtcgtagatcccgaaccgg 352 || ||||||| ||||| ||||| |||||||| |||||||| |||| ||||||||||||| Sbjct: 1740 ccaaacatgtccccgatgacatgtagcgtcttcggctcgccatcgtggatcccgaaccgg 1681 Query: 353 tgctcgacgatctccttctccctcgtgctcaggatgcccaggaactcccgcacctgctgc 412 ||||||| ||||||||||||||| | ||||||||| |||||||| |||| |||||||||| Sbjct: 1680 tgctcgatgatctccttctccctggggctcaggatccccaggaagtccctcacctgctgc 1621 Query: 413 ctcatcatgatcctgtccacgacgaggtccggcgaatcgatgttcgggtcctccgtgatc 472 |||||||| ||||||||||| ||||| || | || | || ||||| || |||||| Sbjct: 1620 ctcatcatcatcctgtccacactcaggtcaggtggctccacatttgggtcttctgtgatc 1561 Query: 473 tcctggaaggtgactgcgtcgttggaccaaacttgatcctgcattgatcgtggctttctg 532 |||||||||||||| | || | ||||| || ||||||||||| || || || || | | Sbjct: 1560 tcctggaaggtgacaccctcatctgaccagacatgatcctgcatcgaccggggtttccgg 1501 Query: 533 gtcttcgctttgagtttcgccagcttctcgatcgagatgcccgcacgcctagctac 588 || |||||| ||| ||||| ||||||||||| | |||||| || ||||| ||||| Sbjct: 1500 gttttcgctcggagcttcgcaagcttctcgatggtgatgccggcgcgcctcgctac 1445
>ref|XM_507175.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0087F21.45 mRNA Length = 2257 Score = 206 bits (104), Expect = 6e-50 Identities = 293/356 (82%) Strand = Plus / Minus Query: 233 ctccgcttcagcttgtccaaggcccggttctggagctgccggatccgctccttggacaag 292 |||| ||| ||||| |||| ||||||||||| ||||||| ||||| ||||||||||| Sbjct: 1848 ctcctcttgagcttctccagcgcccggttctgcagctgcctgatcctctccttggacagc 1789 Query: 293 ccgtacatgtcgccgatcacatggagcgtcttgggctcgccgtcgtagatcccgaaccgg 352 || ||||||| ||||| ||||| |||||||| |||||||| |||| ||||||||||||| Sbjct: 1788 ccaaacatgtccccgatgacatgtagcgtcttcggctcgccatcgtggatcccgaaccgg 1729 Query: 353 tgctcgacgatctccttctccctcgtgctcaggatgcccaggaactcccgcacctgctgc 412 ||||||| ||||||||||||||| | ||||||||| |||||||| |||| |||||||||| Sbjct: 1728 tgctcgatgatctccttctccctggggctcaggatccccaggaagtccctcacctgctgc 1669 Query: 413 ctcatcatgatcctgtccacgacgaggtccggcgaatcgatgttcgggtcctccgtgatc 472 |||||||| ||||||||||| ||||| || | || | || ||||| || |||||| Sbjct: 1668 ctcatcatcatcctgtccacactcaggtcaggtggctccacatttgggtcttctgtgatc 1609 Query: 473 tcctggaaggtgactgcgtcgttggaccaaacttgatcctgcattgatcgtggctttctg 532 |||||||||||||| | || | ||||| || ||||||||||| || || || || | | Sbjct: 1608 tcctggaaggtgacaccctcatctgaccagacatgatcctgcatcgaccggggtttccgg 1549 Query: 533 gtcttcgctttgagtttcgccagcttctcgatcgagatgcccgcacgcctagctac 588 || |||||| ||| ||||| ||||||||||| | |||||| || ||||| ||||| Sbjct: 1548 gttttcgctcggagcttcgcaagcttctcgatggtgatgccggcgcgcctcgctac 1493
>dbj|AK099922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116M03, full insert sequence Length = 2203 Score = 206 bits (104), Expect = 6e-50 Identities = 293/356 (82%) Strand = Plus / Minus Query: 233 ctccgcttcagcttgtccaaggcccggttctggagctgccggatccgctccttggacaag 292 |||| ||| ||||| |||| ||||||||||| ||||||| ||||| ||||||||||| Sbjct: 1801 ctcctcttgagcttctccagcgcccggttctgcagctgcctgatcctctccttggacagc 1742 Query: 293 ccgtacatgtcgccgatcacatggagcgtcttgggctcgccgtcgtagatcccgaaccgg 352 || ||||||| ||||| ||||| |||||||| |||||||| |||| ||||||||||||| Sbjct: 1741 ccaaacatgtccccgatgacatgtagcgtcttcggctcgccatcgtggatcccgaaccgg 1682 Query: 353 tgctcgacgatctccttctccctcgtgctcaggatgcccaggaactcccgcacctgctgc 412 ||||||| ||||||||||||||| | ||||||||| |||||||| |||| |||||||||| Sbjct: 1681 tgctcgatgatctccttctccctggggctcaggatccccaggaagtccctcacctgctgc 1622 Query: 413 ctcatcatgatcctgtccacgacgaggtccggcgaatcgatgttcgggtcctccgtgatc 472 |||||||| ||||||||||| ||||| || | || | || ||||| || |||||| Sbjct: 1621 ctcatcatcatcctgtccacactcaggtcaggtggctccacatttgggtcttctgtgatc 1562 Query: 473 tcctggaaggtgactgcgtcgttggaccaaacttgatcctgcattgatcgtggctttctg 532 |||||||||||||| | || | ||||| || ||||||||||| || || || || | | Sbjct: 1561 tcctggaaggtgacaccctcatctgaccagacatgatcctgcatcgaccggggtttccgg 1502 Query: 533 gtcttcgctttgagtttcgccagcttctcgatcgagatgcccgcacgcctagctac 588 || |||||| ||| ||||| ||||||||||| | |||||| || ||||| ||||| Sbjct: 1501 gttttcgctcggagcttcgcaagcttctcgatggtgatgccggcgcgcctcgctac 1446
>dbj|AK068874.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170C15, full insert sequence Length = 2258 Score = 206 bits (104), Expect = 6e-50 Identities = 293/356 (82%) Strand = Plus / Minus Query: 233 ctccgcttcagcttgtccaaggcccggttctggagctgccggatccgctccttggacaag 292 |||| ||| ||||| |||| ||||||||||| ||||||| ||||| ||||||||||| Sbjct: 1849 ctcctcttgagcttctccagcgcccggttctgcagctgcctgatcctctccttggacagc 1790 Query: 293 ccgtacatgtcgccgatcacatggagcgtcttgggctcgccgtcgtagatcccgaaccgg 352 || ||||||| ||||| ||||| |||||||| |||||||| |||| ||||||||||||| Sbjct: 1789 ccaaacatgtccccgatgacatgtagcgtcttcggctcgccatcgtggatcccgaaccgg 1730 Query: 353 tgctcgacgatctccttctccctcgtgctcaggatgcccaggaactcccgcacctgctgc 412 ||||||| ||||||||||||||| | ||||||||| |||||||| |||| |||||||||| Sbjct: 1729 tgctcgatgatctccttctccctggggctcaggatccccaggaagtccctcacctgctgc 1670 Query: 413 ctcatcatgatcctgtccacgacgaggtccggcgaatcgatgttcgggtcctccgtgatc 472 |||||||| ||||||||||| ||||| || | || | || ||||| || |||||| Sbjct: 1669 ctcatcatcatcctgtccacactcaggtcaggtggctccacatttgggtcttctgtgatc 1610 Query: 473 tcctggaaggtgactgcgtcgttggaccaaacttgatcctgcattgatcgtggctttctg 532 |||||||||||||| | || | ||||| || ||||||||||| || || || || | | Sbjct: 1609 tcctggaaggtgacaccctcatctgaccagacatgatcctgcatcgaccggggtttccgg 1550 Query: 533 gtcttcgctttgagtttcgccagcttctcgatcgagatgcccgcacgcctagctac 588 || |||||| ||| ||||| ||||||||||| | |||||| || ||||| ||||| Sbjct: 1549 gttttcgctcggagcttcgcaagcttctcgatggtgatgccggcgcgcctcgctac 1494
>dbj|AB096012.1| Oryza sativa (japonica cultivar-group) SIG6 mRNA for Sig6, complete cds Length = 1720 Score = 206 bits (104), Expect = 6e-50 Identities = 293/356 (82%) Strand = Plus / Minus Query: 233 ctccgcttcagcttgtccaaggcccggttctggagctgccggatccgctccttggacaag 292 |||| ||| ||||| |||| ||||||||||| ||||||| ||||| ||||||||||| Sbjct: 1673 ctcctcttgagcttctccagcgcccggttctgcagctgcctgatcctctccttggacagc 1614 Query: 293 ccgtacatgtcgccgatcacatggagcgtcttgggctcgccgtcgtagatcccgaaccgg 352 || ||||||| ||||| ||||| |||||||| |||||||| |||| ||||||||||||| Sbjct: 1613 ccaaacatgtccccgatgacatgtagcgtcttcggctcgccatcgtggatcccgaaccgg 1554 Query: 353 tgctcgacgatctccttctccctcgtgctcaggatgcccaggaactcccgcacctgctgc 412 ||||||| ||||||||||||||| | ||||||||| |||||||| |||| |||||||||| Sbjct: 1553 tgctcgatgatctccttctccctggggctcaggatccccaggaagtccctcacctgctgc 1494 Query: 413 ctcatcatgatcctgtccacgacgaggtccggcgaatcgatgttcgggtcctccgtgatc 472 |||||||| ||||||||||| ||||| || | || | || ||||| || |||||| Sbjct: 1493 ctcatcatcatcctgtccacactcaggtcaggtggctccacatttgggtcttctgtgatc 1434 Query: 473 tcctggaaggtgactgcgtcgttggaccaaacttgatcctgcattgatcgtggctttctg 532 |||||||||||||| | || | ||||| || ||||||||||| || || || || | | Sbjct: 1433 tcctggaaggtgacaccctcatctgaccagacatgatcctgcatcgaccggggtttccgg 1374 Query: 533 gtcttcgctttgagtttcgccagcttctcgatcgagatgcccgcacgcctagctac 588 || |||||| ||| ||||| ||||||||||| | |||||| || ||||| ||||| Sbjct: 1373 gttttcgctcggagcttcgcaagcttctcgatggtgatgccggcgcgcctcgctac 1318
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 198 bits (100), Expect = 1e-47 Identities = 175/200 (87%) Strand = Plus / Minus Query: 233 ctccgcttcagcttgtccaaggcccggttctggagctgccggatccgctccttggacaag 292 |||| ||| ||||| |||| ||||||||||| ||||||| ||||| ||||||||||| Sbjct: 8674708 ctcctcttgagcttctccagcgcccggttctgcagctgcctgatcctctccttggacagc 8674649 Query: 293 ccgtacatgtcgccgatcacatggagcgtcttgggctcgccgtcgtagatcccgaaccgg 352 || ||||||| ||||| ||||| |||||||| |||||||| |||| ||||||||||||| Sbjct: 8674648 ccaaacatgtccccgatgacatgtagcgtcttcggctcgccatcgtggatcccgaaccgg 8674589 Query: 353 tgctcgacgatctccttctccctcgtgctcaggatgcccaggaactcccgcacctgctgc 412 ||||||| ||||||||||||||| | ||||||||| |||||||| |||| |||||||||| Sbjct: 8674588 tgctcgatgatctccttctccctggggctcaggatccccaggaagtccctcacctgctgc 8674529 Query: 413 ctcatcatgatcctgtccac 432 |||||||| ||||||||||| Sbjct: 8674528 ctcatcatcatcctgtccac 8674509 Score = 40.1 bits (20), Expect = 8.2 Identities = 74/92 (80%) Strand = Plus / Minus Query: 497 gaccaaacttgatcctgcattgatcgtggctttctggtcttcgctttgagtttcgccagc 556 ||||| || ||||||||||| || || || || | ||| |||||| ||| ||||| ||| Sbjct: 8673980 gaccagacatgatcctgcatcgaccggggtttccgggttttcgctcggagcttcgcaagc 8673921 Query: 557 ttctcgatcgagatgcccgcacgcctagctac 588 |||||||| | |||||| || ||||| ||||| Sbjct: 8673920 ttctcgatggtgatgccggcgcgcctcgctac 8673889
>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21 Length = 187401 Score = 198 bits (100), Expect = 1e-47 Identities = 175/200 (87%) Strand = Plus / Minus Query: 233 ctccgcttcagcttgtccaaggcccggttctggagctgccggatccgctccttggacaag 292 |||| ||| ||||| |||| ||||||||||| ||||||| ||||| ||||||||||| Sbjct: 186619 ctcctcttgagcttctccagcgcccggttctgcagctgcctgatcctctccttggacagc 186560 Query: 293 ccgtacatgtcgccgatcacatggagcgtcttgggctcgccgtcgtagatcccgaaccgg 352 || ||||||| ||||| ||||| |||||||| |||||||| |||| ||||||||||||| Sbjct: 186559 ccaaacatgtccccgatgacatgtagcgtcttcggctcgccatcgtggatcccgaaccgg 186500 Query: 353 tgctcgacgatctccttctccctcgtgctcaggatgcccaggaactcccgcacctgctgc 412 ||||||| ||||||||||||||| | ||||||||| |||||||| |||| |||||||||| Sbjct: 186499 tgctcgatgatctccttctccctggggctcaggatccccaggaagtccctcacctgctgc 186440 Query: 413 ctcatcatgatcctgtccac 432 |||||||| ||||||||||| Sbjct: 186439 ctcatcatcatcctgtccac 186420 Score = 40.1 bits (20), Expect = 8.2 Identities = 74/92 (80%) Strand = Plus / Minus Query: 497 gaccaaacttgatcctgcattgatcgtggctttctggtcttcgctttgagtttcgccagc 556 ||||| || ||||||||||| || || || || | ||| |||||| ||| ||||| ||| Sbjct: 185891 gaccagacatgatcctgcatcgaccggggtttccgggttttcgctcggagcttcgcaagc 185832 Query: 557 ttctcgatcgagatgcccgcacgcctagctac 588 |||||||| | |||||| || ||||| ||||| Sbjct: 185831 ttctcgatggtgatgccggcgcgcctcgctac 185800
>dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0070J06 Length = 142303 Score = 198 bits (100), Expect = 1e-47 Identities = 175/200 (87%) Strand = Plus / Minus Query: 233 ctccgcttcagcttgtccaaggcccggttctggagctgccggatccgctccttggacaag 292 |||| ||| ||||| |||| ||||||||||| ||||||| ||||| ||||||||||| Sbjct: 17687 ctcctcttgagcttctccagcgcccggttctgcagctgcctgatcctctccttggacagc 17628 Query: 293 ccgtacatgtcgccgatcacatggagcgtcttgggctcgccgtcgtagatcccgaaccgg 352 || ||||||| ||||| ||||| |||||||| |||||||| |||| ||||||||||||| Sbjct: 17627 ccaaacatgtccccgatgacatgtagcgtcttcggctcgccatcgtggatcccgaaccgg 17568 Query: 353 tgctcgacgatctccttctccctcgtgctcaggatgcccaggaactcccgcacctgctgc 412 ||||||| ||||||||||||||| | ||||||||| |||||||| |||| |||||||||| Sbjct: 17567 tgctcgatgatctccttctccctggggctcaggatccccaggaagtccctcacctgctgc 17508 Query: 413 ctcatcatgatcctgtccac 432 |||||||| ||||||||||| Sbjct: 17507 ctcatcatcatcctgtccac 17488 Score = 40.1 bits (20), Expect = 8.2 Identities = 74/92 (80%) Strand = Plus / Minus Query: 497 gaccaaacttgatcctgcattgatcgtggctttctggtcttcgctttgagtttcgccagc 556 ||||| || ||||||||||| || || || || | ||| |||||| ||| ||||| ||| Sbjct: 16959 gaccagacatgatcctgcatcgaccggggtttccgggttttcgctcggagcttcgcaagc 16900 Query: 557 ttctcgatcgagatgcccgcacgcctagctac 588 |||||||| | |||||| || ||||| ||||| Sbjct: 16899 ttctcgatggtgatgccggcgcgcctcgctac 16868
>gb|AF099112.1| Zea mays sigma factor SIG6 (sig6) mRNA, complete cds; nuclear gene for chloroplast product Length = 1823 Score = 153 bits (77), Expect = 8e-34 Identities = 166/195 (85%), Gaps = 3/195 (1%) Strand = Plus / Minus Query: 242 agcttgtccaaggcccggttctggagctgccggatccgctccttggacaagccgtacatg 301 |||||||||| |||| |||||| | ||| ||||||| ||||||||||| |||||||||| Sbjct: 1629 agcttgtccagggccttgttctgcacctggcggatcctctccttggacaggccgtacatg 1570 Query: 302 tcgccgatcacatggagcgtcttgggctcgccgtcgtagatcccgaaccggtgctcgacg 361 |||||||| ||||| || |||||||||| |||||||| ||| |||||||||||||||| | Sbjct: 1569 tcgccgatgacatgcagggtcttgggctggccgtcgtggatgccgaaccggtgctcgatg 1510 Query: 362 atctccttctccctcgtgctcaggatgcc---caggaactcccgcacctgctgcctcatc 418 ||||||||||||| | ||||||||| || |||||| ||||||||||||| |||| Sbjct: 1509 atctccttctcccgggggctcaggatccccgtcaggaagctgcgcacctgctgccgcatc 1450 Query: 419 atgatcctgtccacg 433 || | |||||||||| Sbjct: 1449 atcagcctgtccacg 1435 Score = 69.9 bits (35), Expect = 9e-09 Identities = 107/131 (81%) Strand = Plus / Minus Query: 452 atgttcgggtcctccgtgatctcctggaaggtgactgcgtcgttggaccaaacttgatcc 511 ||||| |||||||| |||||||||||| | || || |||||| ||||| ||| ||||| Sbjct: 1416 atgttggggtcctcggtgatctcctggtatgtcacaccgtcgtctgaccagactcgatcc 1357 Query: 512 tgcattgatcgtggctttctggtcttcgctttgagtttcgccagcttctcgatcgagatg 571 ||||| || ||| || ||||| |||||| | |||||||||||||| || |||| |||| Sbjct: 1356 tgcatggaccgtactttcctggttttcgctctcagtttcgccagcttttcaatcgtgatg 1297 Query: 572 cccgcacgcct 582 || |||||||| Sbjct: 1296 ccagcacgcct 1286
>gb|AC142119.2| Homo sapiens fosmid clone XXFOS-80464F2 from 2, complete sequence Length = 10256 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 14 tttctgcttagttctaggaggcttg 38 |||||||||| |||||||||||||| Sbjct: 8291 tttctgcttatttctaggaggcttg 8267
>emb|BX005307.12| Zebrafish DNA sequence from clone DKEY-235F19 in linkage group 6, complete sequence Length = 200462 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 tgtttgtgtttctgcttagtt 26 ||||||||||||||||||||| Sbjct: 49527 tgtttgtgtttctgcttagtt 49507 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 tgtttgtgtttctgcttagtt 26 ||||||||||||||||||||| Sbjct: 19878 tgtttgtgtttctgcttagtt 19858
>emb|BX005391.9| Zebrafish DNA sequence from clone DKEY-91F15 in linkage group 6, complete sequence Length = 162632 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 tgtttgtgtttctgcttagtt 26 ||||||||||||||||||||| Sbjct: 433 tgtttgtgtttctgcttagtt 453
>emb|BX950169.13| Zebrafish DNA sequence from clone CH211-203N19 in linkage group 6, complete sequence Length = 154466 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 tgtttgtgtttctgcttagtt 26 ||||||||||||||||||||| Sbjct: 3501 tgtttgtgtttctgcttagtt 3521
>gb|AC114618.9| Mus musculus chromosome 3, clone RP24-86C15, complete sequence Length = 209209 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 458 gggtcctccgtgatctcctggaagg 482 |||||||||||| |||||||||||| Sbjct: 82073 gggtcctccgtgttctcctggaagg 82049
>gb|AC005371.1| Homo sapiens chromosome 5, BAC clone 342p15 (LBNL H189), complete sequence Length = 142600 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tgtgtttccttttgtatgaa 147 |||||||||||||||||||| Sbjct: 14155 tgtgtttccttttgtatgaa 14136
>ref|XM_417508.1| PREDICTED: Gallus gallus similar to Potential phospholipid-transporting ATPase IIA (LOC419345), mRNA Length = 10950 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 cctcgtgctcaggatgcccaggaa 396 ||||||||||||||| |||||||| Sbjct: 3447 cctcgtgctcaggatacccaggaa 3424
>ref|XM_762043.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_514_15116_17125) partial mRNA Length = 2010 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 gtgctcaggatgcccaggaa 396 |||||||||||||||||||| Sbjct: 1963 gtgctcaggatgcccaggaa 1982
>gb|U40029.1| Caenorhabditis elegans cosmid F10G7, complete sequence Length = 43675 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 132 tttccttttgtatgaacaatcgaaccga 159 |||||||||| |||||||||||| |||| Sbjct: 23433 tttccttttggatgaacaatcgatccga 23406
>gb|AC008689.8| Homo sapiens chromosome 5 clone CTB-61G23, complete sequence Length = 138824 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tgtgtttccttttgtatgaa 147 |||||||||||||||||||| Sbjct: 72516 tgtgtttccttttgtatgaa 72497
>ref|NM_062438.2| Caenorhabditis elegans Tudor Staphylococcal Nuclease homolog family member (tsn-1) (tsn-1) mRNA, complete cds Length = 2776 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 132 tttccttttgtatgaacaatcgaaccga 159 |||||||||| |||||||||||| |||| Sbjct: 879 tttccttttggatgaacaatcgatccga 852
>gb|AC160399.6| Mus musculus 6 BAC RP23-218B15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 196625 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gtttctgcttagttctagga 32 |||||||||||||||||||| Sbjct: 5172 gtttctgcttagttctagga 5153
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 caggaactcccgcacctgct 410 |||||||||||||||||||| Sbjct: 3316336 caggaactcccgcacctgct 3316317
>gb|AC133086.4| Mus musculus BAC clone RP24-110I11 from 6, complete sequence Length = 212696 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gtttctgcttagttctagga 32 |||||||||||||||||||| Sbjct: 65564 gtttctgcttagttctagga 65583
>gb|U66560.1|MAU66560 Mycobacterium avium EmbR (embR), EmbA (embA) and EmbB (embB) genes, complete cds Length = 7853 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 accggtgctcgacgatctcc 367 |||||||||||||||||||| Sbjct: 730 accggtgctcgacgatctcc 711
>emb|AL929017.9| Zebrafish DNA sequence from clone DKEY-4C15 in linkage group 20, complete sequence Length = 208922 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 497 gaccaaacttgatcctgcat 516 |||||||||||||||||||| Sbjct: 176678 gaccaaacttgatcctgcat 176697 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,606,330 Number of Sequences: 3902068 Number of extensions: 3606330 Number of successful extensions: 81853 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81717 Number of HSP's gapped (non-prelim): 131 length of query: 605 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 582 effective length of database: 17,143,297,704 effective search space: 9977399263728 effective search space used: 9977399263728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)